Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000539.1

Orthogroup ID

OG0015658

Physical Location & Seq

Genomic Coordinates Forward (+)

324376 .. 327017

Gene Structure 2642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000539.1_g000073.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

atggcaaggaaagatgagctcgagaagcggcggcagcagaaccaactggttccctcggcttgcggtgtctgtgtgcttaaacgtcctccttttgacgacgagtactactaccagtcgctagatactggttccctcaaaaacgatattatcattgagatactgaaaaggctaccagccaagtctttattgcgatttcgtgctgtatgcaagtcatggtgtgctttcatctctaattcttctaattttagtaggaagcatctcagtcacgcagtcaccgatagcagcagcttccgggtcctttattcattgatgcctcccctctccgtagactgcgaagctttattgaagaaagatggtccggttcaaggcagaaagcttaaactacccaaccgttataaacagcaccggcgaacgactggcagtttaaaacgtgaggttgcgaatattgttgtgggttcttgcaatggcttgatatgtcttctattaaaatggggctacgttgtcttatggaacccttgtactagaaaagtcaacaaattaccaaagcaaactcatgttaagacacatcaaacgttttacggtttcggctacgattcctgcactgacaggtacaagatcattctgggggacatgccctctatgcctaaaacattagcccatacggcaatttttacaacatcatggaggaattttgatgacgttcaaattcataacgaaatatatggtcgtggatgcttactaaacggagctctacattggatagagagtgcccaatggcatgccatcgaggatgaccatagtggcccatcaagattgagtatcatctcttttgatttggcagaggagaaatttcagaagctggtgtcgttaccctctcttgtaacccaagaaacgagcgcaaaagtttggacttctagagattctatctttgtatgcttttggaatggtacagtccgtacagagacaaaattgacaatatgggagatgaaggaatatgggattgaggattcctggaccaatgttgggcatatttcattcaacagtcatcccgagagttattggccgctgaaattttttgaggatgtatgctgggtttgcccgctagcgtacttgggtcagaatttgttggtgcaacattggattgcttaccctttgggcggctgtccttttgatccatttgtggatttgtttctttgccttcttgctatggattttatggttcttcctttggctgtggaagatttctccgatgcggagatgattgaggattactactccctcttgtgtgtctggacttgggatttttgggagctctctattgggattatcgtcgtctcctcccaagctctccaaatctggttagatatatattgttcatgcaaagtggtgcaaattttgtccgtgctggtgctatccttgtggcagcgtccgttgcttggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

480

Amino Acids

55.2

Weight (kDa)

7.48

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015658)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g20202
rosa_chinensis	RchiOBHm_Chr2g0110611 RchiOBHm_Chr3g0475741 RchiOBHm_Chr4g0403441 RchiOBHm_Chr4g0436211 RchiOBHm_Chr5g0080041 RchiOBHm_Chr6g0263871 RchiOBHm_Chr7g0206081
rosa_laevigata	RLG00000015933 RLG00000023820 RLG00000035556
rosa_multiflora	Rmu_sc0000539.1_g000073
rosa_roxburghii	Rroxscaffold_6G00405900
rosa_rugosa	Rorug03G0151100
rosa_samantha	Rh5AG521600
rosa_wichuraiana	Rw3G018270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	327
AciI	CCGC	7 cut(s)	28, 31, 63, 1064, 1100, 1158, 1253
AclI	AACGTT	1 cut(s)	572
AclWI	GGATC	1 cut(s)	1166
AcoI	YGGCCR	1 cut(s)	1061
AcsI	RAATTY	6 cut(s)	688, 705, 848, 1070, 1120, 1392
AfaI	GTAC	6 cut(s)	104, 520, 611, 949, 958, 1109
AfiI	CCNNNNNNNGG	4 cut(s)	365, 1023, 1157, 1436
AgsI	TTSAA	4 cut(s)	346, 365, 704, 1039
AjnI	CCWGG	1 cut(s)	1010
AluBI	AGCT	8 cut(s)	19, 288, 338, 376, 749, 859, 1312, 1346
AluI	AGCT	8 cut(s)	19, 288, 338, 376, 749, 859, 1312, 1346
Alw21I	GWGCWC	3 cut(s)	21, 751, 1314
Alw26I	GTCTC	2 cut(s)	956, 1339
AlwI	GGATC	1 cut(s)	1166
AlwNI	CAGNNNCTG	1 cut(s)	859
Ama87I	CYCGRG	2 cut(s)	20, 1049
AoxI	GGCC	2 cut(s)	802, 1061
ApeKI	GCWGC	4 cut(s)	34, 282, 285, 1423
ApoI	RAATTY	6 cut(s)	688, 705, 848, 1070, 1120, 1392
AspLEI	GCGC	1 cut(s)	899
AspS9I	GGNCC	4 cut(s)	295, 356, 803, 1014
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	265
AsuNHI	GCTAGC	1 cut(s)	1102
AvaI	CYCGRG	2 cut(s)	20, 1049
AvaII	GGWCC	3 cut(s)	295, 356, 1014
BaeGI	GKGCMC	1 cut(s)	772
BanII	GRGCYC	3 cut(s)	21, 751, 1314
BbsI	GAAGAC	1 cut(s)	470
Bbv12I	GWGCWC	3 cut(s)	21, 751, 1314
BbvI	GCAGC	4 cut(s)	46, 294, 297, 1435
BccI	CCATC	3 cut(s)	347, 791, 814
BceAI	ACGGC	1 cut(s)	678
BciT130I	CCWGG	1 cut(s)	1012
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	2 cut(s)	956, 1339
BfaI	CTAG	5 cut(s)	119, 522, 915, 1103, 1441
BglI	GCCNNNNNGGC	1 cut(s)	662
BisI	GCNGC	8 cut(s)	29, 32, 35, 283, 286, 1064, 1159, 1424
BlsI	GCNGC	8 cut(s)	30, 33, 36, 284, 287, 1065, 1160, 1425
BmcAI	AGTACT	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	293, 1012
Bme18I	GGWCC	3 cut(s)	295, 356, 1014
BmeT110I	CYCGRG	2 cut(s)	20, 1049
BmgT120I	GGNCC	4 cut(s)	295, 356, 803, 1014
BmiI	GGNNCC	4 cut(s)	51, 130, 296, 512
BmrFI	CCNGG	2 cut(s)	293, 1012
BmsI	GCATC	4 cut(s)	265, 300, 722, 1240
BmtI	GCTAGC	1 cut(s)	1106
BpiI	GAAGAC	1 cut(s)	470
BpuMI	CCSGG	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	4 cut(s)	365, 1023, 1157, 1436
Bse118I	RCCGGY	1 cut(s)	405
Bse1I	ACTGG	4 cut(s)	51, 112, 130, 421
Bse3DI	GCAATG	1 cut(s)	469
BseBI	CCWGG	1 cut(s)	1012
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	4 cut(s)	737, 796, 1045, 1087
BseLI	CCNNNNNNNGG	4 cut(s)	365, 1023, 1157, 1436
BseMI	GCAATG	1 cut(s)	469
BseMII	CTCAG	1 cut(s)	274
BseNI	ACTGG	4 cut(s)	51, 112, 130, 421
BseRI	GAGGAG	2 cut(s)	857, 1327
BseSI	GKGCMC	1 cut(s)	772
BseXI	GCAGC	4 cut(s)	46, 294, 297, 1435
BseYI	CCCAGC	1 cut(s)	1089
BsgI	GTGCAG	1 cut(s)	583
BshFI	GGCC	2 cut(s)	804, 1063
BsiHKAI	GWGCWC	3 cut(s)	21, 751, 1314
BsiHKCI	CYCGRG	2 cut(s)	20, 1049
BsiSI	CCGG	3 cut(s)	292, 359, 406
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	4 cut(s)	365, 1023, 1157, 1436
BsmAI	GTCTC	2 cut(s)	956, 1339
BsmBI	CGTCTC	1 cut(s)	1339
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	2 cut(s)	804, 1063
BsoBI	CYCGRG	2 cut(s)	20, 1049
Bsp1286I	GDGCHC	4 cut(s)	21, 751, 772, 1314
Bsp143I	GATC	2 cut(s)	615, 1171
BspACI	CCGC	7 cut(s)	28, 31, 63, 1064, 1100, 1158, 1253
BspANI	GGCC	2 cut(s)	804, 1063
BspCNI	CTCAG	1 cut(s)	273
BspLI	GGNNCC	4 cut(s)	51, 130, 296, 512
BspOI	GCTAGC	1 cut(s)	1106
BspPI	GGATC	1 cut(s)	1166
BsrDI	GCAATG	1 cut(s)	469
BsrFI	RCCGGY	1 cut(s)	405
BsrI	ACTGG	4 cut(s)	51, 112, 130, 421
BssAI	RCCGGY	1 cut(s)	405
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	615, 1171
Bst2UI	CCWGG	1 cut(s)	1012
Bst4CI	ACNGT	4 cut(s)	392, 581, 952, 1043
BstC8I	GCNNGC	4 cut(s)	61, 780, 1100, 1104
BstDEI	CTNAG	1 cut(s)	260
BstF5I	GGATG	4 cut(s)	737, 796, 1045, 1087
BstHHI	GCGC	1 cut(s)	899
BstKTI	GATC	2 cut(s)	618, 1174
BstMAI	GTCTC	2 cut(s)	956, 1339
BstMBI	GATC	2 cut(s)	615, 1171
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 34, 640, 662, 1095, 1432
BstNI	CCWGG	1 cut(s)	1012
BstNSI	RCATGY	2 cut(s)	634, 782
BstSCI	CCNGG	2 cut(s)	291, 1010
BstSLI	GKGCMC	1 cut(s)	772
BstV1I	GCAGC	4 cut(s)	46, 294, 297, 1435
BstV2I	GAAGAC	1 cut(s)	470
BsuRI	GGCC	2 cut(s)	804, 1063
BtsCI	GGATG	4 cut(s)	737, 796, 1045, 1087
BtsIMutI	CAGTG	1 cut(s)	600
Cac8I	GCNNGC	4 cut(s)	61, 780, 1100, 1104
CaiI	CAGNNNCTG	1 cut(s)	859
CfoI	GCGC	1 cut(s)	899
Cfr10I	RCCGGY	1 cut(s)	405
Cfr13I	GGNCC	4 cut(s)	295, 356, 803, 1014
CseI	GACGC	1 cut(s)	1415
Csp6I	GTAC	6 cut(s)	103, 519, 610, 948, 957, 1108
CviAII	CATG	6 cut(s)	213, 554, 631, 681, 779, 1377
CviQI	GTAC	6 cut(s)	103, 519, 610, 948, 957, 1108
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	2 cut(s)	617, 1173
DpnII	GATC	2 cut(s)	615, 1171
DraI	TTTAAA	1 cut(s)	426
EaeI	YGGCCR	1 cut(s)	1061
Ecl136II	GAGCTC	3 cut(s)	19, 749, 1312
Eco24I	GRGCYC	3 cut(s)	21, 751, 1314
Eco47I	GGWCC	3 cut(s)	295, 356, 1014
Eco53kI	GAGCTC	3 cut(s)	19, 749, 1312
Eco88I	CYCGRG	2 cut(s)	20, 1049
EcoICRI	GAGCTC	3 cut(s)	19, 749, 1312
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	1010
EcoT38I	GRGCYC	3 cut(s)	21, 751, 1314
Esp3I	CGTCTC	1 cut(s)	1339
FaeI	CATG	6 cut(s)	216, 557, 634, 684, 782, 1380
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	6 cut(s)	212, 553, 630, 680, 778, 1376
FauI	CCCGC	1 cut(s)	1107
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	8 cut(s)	29, 32, 35, 283, 286, 1064, 1159, 1424
FokI	GGATG	4 cut(s)	744, 803, 1032, 1094
FriOI	GRGCYC	3 cut(s)	21, 751, 1314
Fsp4HI	GCNGC	8 cut(s)	29, 32, 35, 283, 286, 1064, 1159, 1424
FspBI	CTAG	5 cut(s)	119, 522, 915, 1103, 1441
GlaI	GCGC	1 cut(s)	898
GluI	GCNGC	8 cut(s)	29, 32, 35, 283, 286, 1064, 1159, 1424
GsaI	CCCAGC	1 cut(s)	1093
HaeIII	GGCC	2 cut(s)	804, 1063
HapII	CCGG	3 cut(s)	292, 359, 406
HgaI	GACGC	1 cut(s)	1415
HhaI	GCGC	1 cut(s)	899
Hin1II	CATG	6 cut(s)	216, 557, 634, 684, 782, 1380
Hin6I	GCGC	1 cut(s)	897
HinP1I	GCGC	1 cut(s)	897
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HindIII	AAGCTT	2 cut(s)	336, 374
HinfI	GANTC	3 cut(s)	593, 920, 1007
HpaII	CCGG	3 cut(s)	292, 359, 406
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	2 cut(s)	328, 532
Hpy188I	TCNGA	3 cut(s)	855, 1119, 1249
Hpy188III	TCNNGA	5 cut(s)	22, 810, 915, 1049, 1291
Hpy8I	GTNNAC	2 cut(s)	328, 532
Hpy99I	CGWCG	2 cut(s)	101, 1334
HpyAV	CCTTC	2 cut(s)	982, 1208
HpyCH4III	ACNGT	4 cut(s)	392, 581, 952, 1043
HpyCH4IV	ACGT	5 cut(s)	82, 430, 498, 572, 699
HpyCH4V	TGCA	6 cut(s)	207, 462, 600, 1132, 1380, 1390
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 34, 640, 662, 1095, 1432
HpyF3I	CTNAG	1 cut(s)	260
HpySE526I	ACGT	5 cut(s)	82, 430, 498, 572, 699
Hsp92II	CATG	6 cut(s)	216, 557, 634, 684, 782, 1380
HspAI	GCGC	1 cut(s)	897
Kzo9I	GATC	2 cut(s)	615, 1171
LmnI	GCTCC	2 cut(s)	746, 1309
Lsp1109I	GCAGC	4 cut(s)	46, 294, 297, 1435
LweI	GCATC	4 cut(s)	265, 300, 722, 1240
MaeI	CTAG	5 cut(s)	119, 522, 915, 1103, 1441
MaeII	ACGT	5 cut(s)	82, 430, 498, 572, 699
MaeIII	GTNAC	4 cut(s)	263, 271, 867, 880
MalI	GATC	2 cut(s)	617, 1173
MboI	GATC	2 cut(s)	615, 1171
MboII	GAAGA	5 cut(s)	228, 358, 470, 1214, 1250
MhlI	GDGCHC	4 cut(s)	21, 751, 772, 1314
MseI	TTAA	5 cut(s)	78, 378, 425, 485, 558
MspA1I	CMGCKG	1 cut(s)	1066
MspI	CCGG	3 cut(s)	292, 359, 406
MspR9I	CCNGG	2 cut(s)	293, 1012
MvaI	CCWGG	1 cut(s)	1012
MwoI	GCNNNNNNNGC	6 cut(s)	25, 34, 640, 662, 1095, 1432
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	2 cut(s)	615, 1171
NheI	GCTAGC	1 cut(s)	1102
NlaIII	CATG	6 cut(s)	216, 557, 634, 684, 782, 1380
NlaIV	GGNNCC	4 cut(s)	51, 130, 296, 512
NmeAIII	GCCGAG	1 cut(s)	35
NmuCI	GTSAC	2 cut(s)	263, 271
NspI	RCATGY	2 cut(s)	634, 782
PaeI	GCATGC	1 cut(s)	782
PaeR7I	CTCGAG	1 cut(s)	20
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	593, 920, 1007
PfoI	TCCNGGA	1 cut(s)	1010
PkrI	GCNGC	8 cut(s)	30, 33, 36, 284, 287, 1065, 1160, 1425
PpuMI	RGGWCCY	1 cut(s)	295
PsiI	TTATAA	1 cut(s)	396
Psp124BI	GAGCTC	3 cut(s)	21, 751, 1314
Psp1406I	AACGTT	1 cut(s)	572
Psp5II	RGGWCCY	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	1010
PspFI	CCCAGC	1 cut(s)	1089
PspGI	CCWGG	1 cut(s)	1010
PspN4I	GGNNCC	4 cut(s)	51, 130, 296, 512
PspPI	GGNCC	4 cut(s)	295, 356, 803, 1014
PspPPI	RGGWCCY	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	859
RsaI	GTAC	6 cut(s)	104, 520, 611, 949, 958, 1109
RsaNI	GTAC	6 cut(s)	103, 519, 610, 948, 957, 1108
SacI	GAGCTC	3 cut(s)	21, 751, 1314
SaqAI	TTAA	5 cut(s)	78, 378, 425, 485, 558
SatI	GCNGC	8 cut(s)	29, 32, 35, 283, 286, 1064, 1159, 1424
Sau3AI	GATC	2 cut(s)	615, 1171
Sau96I	GGNCC	4 cut(s)	295, 356, 803, 1014
ScaI	AGTACT	1 cut(s)	104
ScrFI	CCNGG	2 cut(s)	293, 1012
SduI	GDGCHC	4 cut(s)	21, 751, 772, 1314
SfaNI	GCATC	4 cut(s)	265, 300, 722, 1240
Sfr274I	CTCGAG	1 cut(s)	20
SgrAI	CRCCGGYG	1 cut(s)	405
SinI	GGWCC	3 cut(s)	295, 356, 1014
SlaI	CTCGAG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
SphI	GCATGC	1 cut(s)	782
SsiI	CCGC	7 cut(s)	28, 31, 63, 1064, 1100, 1158, 1253
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	5 cut(s)	119, 522, 915, 1103, 1441
SstI	GAGCTC	3 cut(s)	21, 751, 1314
StyD4I	CCNGG	2 cut(s)	291, 1010
TaaI	ACNGT	4 cut(s)	392, 581, 952, 1043
TaiI	ACGT	5 cut(s)	85, 433, 501, 575, 702
TaqI	TCGA	2 cut(s)	21, 786
TatI	WGTACW	2 cut(s)	102, 518
TauI	GCSGC	4 cut(s)	31, 34, 1066, 1161
TfiI	GAWTC	3 cut(s)	593, 920, 1007
Tru1I	TTAA	5 cut(s)	78, 378, 425, 485, 558
Tru9I	TTAA	5 cut(s)	78, 378, 425, 485, 558
TscAI	CASTG	1 cut(s)	607
TseFI	GTSAC	2 cut(s)	263, 271
TseI	GCWGC	4 cut(s)	34, 282, 285, 1423
Tsp45I	GTSAC	2 cut(s)	263, 271
TspDTI	ATGAA	6 cut(s)	214, 294, 698, 1001, 1023, 1365
TspGWI	ACGGA	5 cut(s)	313, 759, 944, 1390, 1419
TspRI	CASTG	1 cut(s)	607
VpaK11BI	GGWCC	3 cut(s)	295, 356, 1014
XapI	RAATTY	6 cut(s)	688, 705, 848, 1070, 1120, 1392
XbaI	TCTAGA	1 cut(s)	914
XceI	RCATGY	2 cut(s)	634, 782
XhoI	CTCGAG	1 cut(s)	20
XmiI	GTMKAC	1 cut(s)	327
XspI	CTAG	5 cut(s)	119, 522, 915, 1103, 1441
ZrmI	AGTACT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.