Rh5AG521600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0015658
Physical Location & Seq
Reverse (-)
89430911 .. 89431258
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG521600.1

Sequence Viewer

Length: 348 bp
ATGTACTCAAACTTCAACGGCTCCAACAGCTCTCGATCGGGATCGCCGTCGTACCTTCTCAAGCTCTCCAAATCAGGTTCAATGTTATTCATGCACATTGGTGCGAGTTTCGTTGGCAGTGGCGCTATCGCCGTGGCAGCGTCAATTGCTTGGCTAGATTGGGGTTTGGATGGATTGCCCTGGTTTTGGGTTCCTGTTGTTGTTGTTCTCTCTATCTTTGTTTCTCTGTTTATATTGTTGTTTGGGTTTGGTTTCTTACCCTCCAGTTTATGTTGCTGTTCGTCTTCGTTTCTGCACTTGACCCAATTTCTGGGTTCTGTAACTTTCCTAAAGTTTAATGTTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.38

Weight (kDa)

8.59

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 310
AclWI GGATC 1 cut(s) 49
AfaI GTAC 2 cut(s) 5, 53
AfiI CCNNNNNNNGG 2 cut(s) 186, 310
AgsI TTSAA 2 cut(s) 16, 81
AjnI CCWGG 1 cut(s) 179
AleI CACNNNNGTG 1 cut(s) 99
AluBI AGCT 2 cut(s) 30, 64
AluI AGCT 2 cut(s) 30, 64
AlwI GGATC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 137
AspLEI GCGC 1 cut(s) 125
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 276
BbvI GCAGC 1 cut(s) 149
BccI CCATC 1 cut(s) 164
BceAI ACGGC 3 cut(s) 31, 34, 116
BciT130I CCWGG 1 cut(s) 181
BfaI CTAG 1 cut(s) 155
BfoI RGCGCY 1 cut(s) 126
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 181
BmiI GGNNCC 2 cut(s) 22, 192
BmrFI CCNGG 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 276
BpmI CTGGAG 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 132, 179
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 310
Bse1I ACTGG 1 cut(s) 264
Bse8I GATNNNNATC 1 cut(s) 40
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 2 cut(s) 132, 179
BseGI GGATG 1 cut(s) 175
BseJI GATNNNNATC 1 cut(s) 40
BseLI CCNNNNNNNGG 2 cut(s) 186, 310
BseNI ACTGG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 278
Bsh1285I CGRYCG 1 cut(s) 38
BsiEI CGRYCG 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 186, 310
Bsp143I GATC 2 cut(s) 35, 41
BspLI GGNNCC 2 cut(s) 22, 192
BspPI GGATC 1 cut(s) 49
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 2 cut(s) 132, 179
BssMI GATC 2 cut(s) 35, 41
Bst2UI CCWGG 1 cut(s) 181
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 175
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 2 cut(s) 38, 44
BstMBI GATC 2 cut(s) 35, 41
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 3 cut(s) 27, 137, 146
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 149
BstV2I GAAGAC 1 cut(s) 276
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 1 cut(s) 175
BtsI GCAGTG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 124
CfoI GCGC 1 cut(s) 125
CseI GACGC 1 cut(s) 129
Csp6I GTAC 2 cut(s) 4, 52
CviAII CATG 1 cut(s) 91
CviJI RGCY 4 cut(s) 21, 30, 64, 154
CviKI_1 RGCY 4 cut(s) 21, 30, 64, 154
CviQI GTAC 2 cut(s) 4, 52
DpnI GATC 2 cut(s) 37, 43
DpnII GATC 2 cut(s) 35, 41
EcoRII CCWGG 1 cut(s) 179
FaeI CATG 1 cut(s) 94
FaiI YATR 3 cut(s) 92, 233, 271
FatI CATG 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 1 cut(s) 155
GlaI GCGC 1 cut(s) 124
GluI GCNGC 1 cut(s) 138
GsuI CTGGAG 1 cut(s) 247
HaeII RGCGCY 1 cut(s) 126
HgaI GACGC 1 cut(s) 129
HhaI GCGC 1 cut(s) 125
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
Hpy188III TCNNGA 2 cut(s) 33, 39
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 65
HpyCH4V TGCA 2 cut(s) 94, 295
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 137, 146
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 1 cut(s) 123
Kzo9I GATC 2 cut(s) 35, 41
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 6 cut(s) 60, 166, 193, 207, 277, 296
Lsp1109I GCAGC 1 cut(s) 149
MaeI CTAG 1 cut(s) 155
MaeIII GTNAC 1 cut(s) 319
MalI GATC 2 cut(s) 37, 43
MboI GATC 2 cut(s) 35, 41
MboII GAAGA 1 cut(s) 276
MfeI CAATTG 1 cut(s) 144
MluCI AATT 2 cut(s) 144, 305
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 1 cut(s) 271
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 181
MunI CAATTG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 3 cut(s) 27, 137, 146
NdeII GATC 2 cut(s) 35, 41
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 2 cut(s) 22, 192
OliI CACNNNNGTG 1 cut(s) 99
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PflMI CCANNNNNTGG 1 cut(s) 310
PkrI GCNGC 1 cut(s) 139
Ple19I CGATCG 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
PspN4I GGNNCC 2 cut(s) 22, 192
PvuI CGATCG 1 cut(s) 38
RsaI GTAC 2 cut(s) 5, 53
RsaNI GTAC 2 cut(s) 4, 52
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 2 cut(s) 35, 41
ScrFI CCNGG 1 cut(s) 181
SetI ASST 4 cut(s) 32, 57, 66, 79
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 144, 305
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 179
TaqI TCGA 1 cut(s) 34
TasI AATT 2 cut(s) 144, 305
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 124
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 79
TspRI CASTG 1 cut(s) 124
Van91I CCANNNNNTGG 1 cut(s) 310
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.