RchiOBHm_Chr5g0080041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015658
Physical Location & Seq
Reverse (-)
85863607 .. 85864396
790 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35438

Sequence Viewer

Length: 318 bp
ATGTTCTCTAATGATGATTTGAGGTTTATTGCTCCCTCTTGTGTGTCTAGACTTAGGATTTTCGGGTGCTCTCGATCGGGATCGCCGTCGTACCTTCTCAAGCTCTCCAAATCAGGTTCAATGTTATTCATGCACATTGGTGCGAGTTTCGTTGGCAGTGGCGCTATCGCCGTGGCAGCGTCAATTGCTTGGCTAGATTGGGTTTGGATGGATTGCCCTGGTTTTGGGTTCCTGTTTTTATGTTGCTGTTCGTCTTCGTTTCTGCACTTGACCCAATTTCTGGGTTCTGTAACTTTCCTAAAGTTTAATGTTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.45

Weight (kDa)

8.65

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 280
AclWI GGATC 1 cut(s) 88
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 2 cut(s) 224, 280
AgsI TTSAA 1 cut(s) 120
AjnI CCWGG 1 cut(s) 217
AleI CACNNNNGTG 1 cut(s) 138
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw21I GWGCWC 1 cut(s) 71
AlwI GGATC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 176
AspLEI GCGC 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 188
BccI CCATC 1 cut(s) 202
BceAI ACGGC 2 cut(s) 70, 155
BciT130I CCWGG 1 cut(s) 219
BfaI CTAG 2 cut(s) 48, 194
BfoI RGCGCY 1 cut(s) 165
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 219
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 83
BsaBI GATNNNNATC 1 cut(s) 79
BsaJI CCNNGG 2 cut(s) 171, 217
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 280
Bse8I GATNNNNATC 1 cut(s) 79
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 171, 217
BseGI GGATG 1 cut(s) 213
BseJI GATNNNNATC 1 cut(s) 79
BseLI CCNNNNNNNGG 2 cut(s) 224, 280
BseXI GCAGC 1 cut(s) 188
BsgI GTGCAG 1 cut(s) 248
Bsh1285I CGRYCG 1 cut(s) 77
BsiEI CGRYCG 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 71
BslI CCNNNNNNNGG 2 cut(s) 224, 280
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 2 cut(s) 74, 80
BspLI GGNNCC 1 cut(s) 230
BspPI GGATC 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 171, 217
BssMI GATC 2 cut(s) 74, 80
Bst2UI CCWGG 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 53
BstDSI CCRYGG 1 cut(s) 171
BstF5I GGATG 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 2 cut(s) 77, 83
BstMBI GATC 2 cut(s) 74, 80
BstMCI CGRYCG 1 cut(s) 77
BstMWI GCNNNNNNNGC 2 cut(s) 176, 185
BstNI CCWGG 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 246
BtgI CCRYGG 1 cut(s) 171
BtsCI GGATG 1 cut(s) 213
BtsI GCAGTG 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 163
CfoI GCGC 1 cut(s) 164
CseI GACGC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 91
CviAII CATG 1 cut(s) 130
CviJI RGCY 2 cut(s) 103, 193
CviKI_1 RGCY 2 cut(s) 103, 193
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 1 cut(s) 53
DpnI GATC 2 cut(s) 76, 82
DpnII GATC 2 cut(s) 74, 80
EcoRII CCWGG 1 cut(s) 217
FaeI CATG 1 cut(s) 133
FaiI YATR 2 cut(s) 131, 241
FatI CATG 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 220
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 2 cut(s) 48, 194
GlaI GCGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 177
HaeII RGCGCY 1 cut(s) 165
HgaI GACGC 1 cut(s) 168
HhaI GCGC 1 cut(s) 164
Hin1II CATG 1 cut(s) 133
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
Hpy188III TCNNGA 3 cut(s) 48, 72, 78
Hpy99I CGWCG 1 cut(s) 91
HpyAV CCTTC 1 cut(s) 104
HpyCH4V TGCA 2 cut(s) 133, 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 185
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 1 cut(s) 133
HspAI GCGC 1 cut(s) 162
Kzo9I GATC 2 cut(s) 74, 80
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 5 cut(s) 99, 204, 231, 245, 266
Lsp1109I GCAGC 1 cut(s) 188
MaeI CTAG 2 cut(s) 48, 194
MaeIII GTNAC 1 cut(s) 289
MalI GATC 2 cut(s) 76, 82
MboI GATC 2 cut(s) 74, 80
MboII GAAGA 1 cut(s) 246
MfeI CAATTG 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 2 cut(s) 183, 275
MnlI CCTC 2 cut(s) 15, 46
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 219
MunI CAATTG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 2 cut(s) 176, 185
NdeII GATC 2 cut(s) 74, 80
NlaIII CATG 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 230
OliI CACNNNNGTG 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PflMI CCANNNNNTGG 1 cut(s) 280
PkrI GCNGC 1 cut(s) 178
Ple19I CGATCG 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 230
PvuI CGATCG 1 cut(s) 77
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 74, 80
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 1 cut(s) 71
SetI ASST 4 cut(s) 26, 96, 105, 118
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 2 cut(s) 183, 275
SspMI CTAG 2 cut(s) 48, 194
StyD4I CCNGG 1 cut(s) 217
TaqI TCGA 1 cut(s) 73
TasI AATT 2 cut(s) 183, 275
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 163
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 118
TspRI CASTG 1 cut(s) 163
Van91I CCANNNNNTGG 1 cut(s) 280
XbaI TCTAGA 1 cut(s) 47
XspI CTAG 2 cut(s) 48, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.