RchiOBHm_Chr7g0206081

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015658
Physical Location & Seq
Forward (+)
23737835 .. 23739018
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18442

Sequence Viewer

Length: 438 bp
ATGCCTTTAGTCGCCCTTTTAAACGGGGTGTGCCCGTTATCGCACATGGGTTGGATCCCAATTGTGCAACACAGGATTGTTCATCCTTTGGGTGGCTGTCTAGTAGATCCCTTTGTGGATCTGTTTACTTTTCGTCTTGCTTCGGTTCTTGTGGTTTCTACTTTGGCGATGGAAGATGTTCTCCGTTCCGGAGATGATCTGAGATTTGTGGCTCCTTGTGTGTTTGGAATTGGGTTGTTCCGGTGCTCGAGTTCGAGTTCGTTGTTGGCTCTTTCCAAGCTTTTCAACTCTGGCCCGATGATGTTCTTCAAACTTGGTGCGAATTATGTTCGTGGTGGCGCTATCGCTGTGGCAGCGTCCGTTGCTTTGGCTAGATTGGGGTTTGGATGGATTGGGCTCCCCTGGTTTGAGTCCTTGTTGTTGTTGTCTTTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.56

Weight (kDa)

8.49

Isoelectric Point (pI)

26.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 188
AclWI GGATC 4 cut(s) 49, 62, 101, 126
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 2 cut(s) 286, 310
AjnI CCWGG 1 cut(s) 401
AluBI AGCT 1 cut(s) 280
AluI AGCT 1 cut(s) 280
Alw21I GWGCWC 1 cut(s) 248
AlwI GGATC 4 cut(s) 49, 62, 101, 126
Ama87I CYCGRG 1 cut(s) 247
Aor13HI TCCGGA 1 cut(s) 188
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 1 cut(s) 353
Asp700I GAANNNNTTC 1 cut(s) 177
AspLEI GCGC 1 cut(s) 341
AspS9I GGNCC 1 cut(s) 293
AvaI CYCGRG 1 cut(s) 247
BaeGI GKGCMC 1 cut(s) 35
BamHI GGATCC 1 cut(s) 54
BanII GRGCYC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 248
BbvI GCAGC 1 cut(s) 365
BccI CCATC 2 cut(s) 163, 381
BciT130I CCWGG 1 cut(s) 403
BfaI CTAG 2 cut(s) 101, 372
BfoI RGCGCY 1 cut(s) 342
BisI GCNGC 1 cut(s) 354
BlsI GCNGC 1 cut(s) 355
Bme1390I CCNGG 1 cut(s) 403
BmeT110I CYCGRG 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 3 cut(s) 56, 213, 398
BmrFI CCNGG 1 cut(s) 403
BsaJI CCNNGG 1 cut(s) 401
BsaWI WCCGGW 2 cut(s) 188, 240
Bsc4I CCNNNNNNNGG 1 cut(s) 92
BseAI TCCGGA 1 cut(s) 188
BseBI CCWGG 1 cut(s) 403
BseDI CCNNGG 1 cut(s) 401
BseGI GGATG 2 cut(s) 82, 392
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 191
BseSI GKGCMC 1 cut(s) 35
BseXI GCAGC 1 cut(s) 365
BshFI GGCC 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 248
BsiHKCI CYCGRG 1 cut(s) 247
BsiSI CCGG 2 cut(s) 189, 241
BslI CCNNNNNNNGG 1 cut(s) 92
BsnI GGCC 1 cut(s) 294
BsoBI CYCGRG 1 cut(s) 247
Bsp1286I GDGCHC 3 cut(s) 35, 248, 399
Bsp13I TCCGGA 1 cut(s) 188
Bsp143I GATC 4 cut(s) 54, 106, 118, 196
BspANI GGCC 1 cut(s) 294
BspCNI CTCAG 1 cut(s) 192
BspEI TCCGGA 1 cut(s) 188
BspLI GGNNCC 3 cut(s) 56, 213, 398
BspPI GGATC 4 cut(s) 49, 62, 101, 126
BssECI CCNNGG 1 cut(s) 401
BssMI GATC 4 cut(s) 54, 106, 118, 196
Bst2UI CCWGG 1 cut(s) 403
BstDEI CTNAG 1 cut(s) 200
BstF5I GGATG 2 cut(s) 82, 392
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 4 cut(s) 57, 109, 121, 199
BstMBI GATC 4 cut(s) 54, 106, 118, 196
BstMWI GCNNNNNNNGC 2 cut(s) 353, 362
BstNI CCWGG 1 cut(s) 403
BstSCI CCNGG 1 cut(s) 401
BstSLI GKGCMC 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 365
BstX2I RGATCY 3 cut(s) 54, 106, 118
BstYI RGATCY 3 cut(s) 54, 106, 118
BsuRI GGCC 1 cut(s) 294
BtgZI GCGATG 1 cut(s) 182
BtsCI GGATG 2 cut(s) 82, 392
CfoI GCGC 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 293
CseI GACGC 1 cut(s) 345
CviAII CATG 1 cut(s) 46
CviJI RGCY 7 cut(s) 96, 212, 269, 280, 294, 371, 397
CviKI_1 RGCY 7 cut(s) 96, 212, 269, 280, 294, 371, 397
DdeI CTNAG 1 cut(s) 200
DpnI GATC 4 cut(s) 56, 108, 120, 198
DpnII GATC 4 cut(s) 54, 106, 118, 196
DraI TTTAAA 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 401
EcoT38I GRGCYC 1 cut(s) 399
FaeI CATG 1 cut(s) 49
FaiI YATR 2 cut(s) 47, 327
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 354
FokI GGATG 2 cut(s) 69, 399
FriOI GRGCYC 1 cut(s) 399
Fsp4HI GCNGC 1 cut(s) 354
FspBI CTAG 2 cut(s) 101, 372
GlaI GCGC 1 cut(s) 340
GluI GCNGC 1 cut(s) 354
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 1 cut(s) 294
HapII CCGG 2 cut(s) 189, 241
HgaI GACGC 1 cut(s) 345
HhaI GCGC 1 cut(s) 341
Hin1II CATG 1 cut(s) 49
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 1 cut(s) 410
HpaII CCGG 2 cut(s) 189, 241
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 1 cut(s) 189
Hpy8I GTNNAC 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 362
HpyF3I CTNAG 1 cut(s) 200
Hsp92II CATG 1 cut(s) 49
HspAI GCGC 1 cut(s) 339
Kpn2I TCCGGA 1 cut(s) 188
Kzo9I GATC 4 cut(s) 54, 106, 118, 196
LmnI GCTCC 2 cut(s) 217, 402
LpnPI CCDG 6 cut(s) 58, 202, 254, 276, 388, 415
Lsp1109I GCAGC 1 cut(s) 365
MaeI CTAG 2 cut(s) 101, 372
MalI GATC 4 cut(s) 56, 108, 120, 198
MboI GATC 4 cut(s) 54, 106, 118, 196
MboII GAAGA 2 cut(s) 185, 298
MfeI CAATTG 1 cut(s) 60
MflI RGATCY 3 cut(s) 54, 106, 118
MhlI GDGCHC 3 cut(s) 35, 248, 399
MluCI AATT 3 cut(s) 60, 228, 322
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 1 cut(s) 32
MroI TCCGGA 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 1 cut(s) 20
MspI CCGG 2 cut(s) 189, 241
MspR9I CCNGG 1 cut(s) 403
MunI CAATTG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 403
MwoI GCNNNNNNNGC 2 cut(s) 353, 362
NdeII GATC 4 cut(s) 54, 106, 118, 196
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 3 cut(s) 56, 213, 398
PaeR7I CTCGAG 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 177
PkrI GCNGC 1 cut(s) 355
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 401
PspGI CCWGG 1 cut(s) 401
PspN4I GGNNCC 3 cut(s) 56, 213, 398
PspPI GGNCC 1 cut(s) 293
PspXI VCTCGAGB 1 cut(s) 247
PsuI RGATCY 3 cut(s) 54, 106, 118
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 1 cut(s) 354
Sau3AI GATC 4 cut(s) 54, 106, 118, 196
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 1 cut(s) 403
SduI GDGCHC 3 cut(s) 35, 248, 399
SetI ASST 1 cut(s) 282
Sfr274I CTCGAG 1 cut(s) 247
SlaI CTCGAG 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
Sse9I AATT 3 cut(s) 60, 228, 322
SspMI CTAG 2 cut(s) 101, 372
StyD4I CCNGG 1 cut(s) 401
TaqI TCGA 2 cut(s) 248, 254
TasI AATT 3 cut(s) 60, 228, 322
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TseI GCWGC 1 cut(s) 353
TspDTI ATGAA 1 cut(s) 71
TspGWI ACGGA 2 cut(s) 173, 349
XhoI CTCGAG 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 2 cut(s) 101, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.