Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011579

Physical Location & Seq

Genomic Coordinates Forward (+)

18282555 .. 18285274

Gene Structure 2720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1662 bp

ATGACAAAAGAAGAGAAAATTGAGGTTGTGGAAGAGACCCTCTCCAAAATGGGACTTCAAGATTGTGCTGAGACTTATATCGGGAATTGGCATTTGAGAGGTATAAGTAATGGAGAAAAGAGGAGACTTAGCATTTGCATTGAAATATTAACACAGCCTCATGTATTATTGCTTGATGAACCCACTAGCGGTCTAGATAGTGCTTCATCTTTCTTTGTGATATGGGCTCTGAGAAACATTGCTCGCGATGGAAGGATAGTCATTTGCTCTATTCACCAACCAAGTAGTGATGTTTTTAATCTCTTCAATGATCTGCTCCTCATAGCAGGAGGTGAAACTGTTTATTTCGGAGAGCCACAGAAGGCTGTAAAGTTCTTCTCTGATGCTGGATTTCCTTGTCCGACAAGGAAAAATCCTCCCGAACATTACCTTCGATGTATTAGTTCCGACTTTGACAAAGTAATTACAGCTCTTATCCTATCTCAAAGAATGAATTATGGACCATCATCACTCTTATCAAATACCAATATGAACTTGACCACAGAAGAGATCAAAGATAAACTAATCAACATATATAAGAAGTCCCCATTTTCAATAGATGCTAGAACAACGATCCAAGAAATTTTGCTCACGGAAAAGCTTTCCGCAAAATCAAACAAGGGCAATAGTATTAGCTGGTTGAAGCAGCTGTGGACATTGACATGCCGTACTTCACTAAACATGTCTAGAGATATCGGGTACTACTGGTTAAGGTGTCTGTTTTACGTTCTAATAGCAGTGAGTGCTGGTTCCTTCTTCTATCATATTGGAACAGATAATCAAGCAATTGTGTCAAGAGGAAAATGTGATGGTTTCATTTACGGCCTCATGATTTGCTTGTCCATTGGAGGCATACCCTTTGTCATTGAAGAACTAAAGGTGTTTAGGCGTGAAAGACTTGGTGGCCACTATGGGGAAGCTTTGTTTGTGCTCTCCAACTTCATTTCATCTCTGCCTTTCGTCGTCCTCATGGCTTTCTCTGCTGGAACAATACTATACCACATGGTGCAATTCCATAACGGGTTCTCTCATTACTTTTATTTTTGTCTGAATCTCTTGTGCTGCATTGTGGTCACAGAAGGCACAGCCTTGATTGTTGCATCGTTGGTCCCAAACCTCTTGATGGGTATCGGATGTGCTGCTGCTGTCACCGTAATCATGATGATGCCTTCACTTCTTTTCCGGAGGGTCTTTGAGCTTCCAAAATTCTTTTGGCAATACCCAATGTCATACCTTAGTTATGCTGGATGGGCAATAGAGGGTCAGTTGAAGAATGACATGATTGGGATGGAATTTGACTCCCCGCTCCAAGGAGAACCCAAGTTGAAGGGTGAGATCATCCTCCGAGAAATGTATGGGATAAATCCGGATAGTTCTAAGTGGTGGAATTTAGCTGCTCTTACCTGCCTCTTAGTTGGTCTGAGATTCATCTTTTATGTGGTACTAAAATACAAAGAGAGATCATCATTATTTTTCCAGACACTCTATGCCAAGAGAACCACCCTCCAAAGCCATGTCAAGGTAGCTTCATTCAGGAAGGATCAATACATCTCTTCCTCGAAGAGACACCGGACTCTTACTCCGTTATCTTCACAAGAAGGTCTTGGATCACCACTCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

554

Amino Acids

62.58

Weight (kDa)

8.69

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	9 - 63	2.7e-08	ABC transporter
ABC2_membrane_7	PF19055	92 - 145	1.9e-10	ABC-2 type transporter
ABC2_membrane	PF01061	229 - 438	4.6e-29	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011579)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24260
malus_domestica	MD00G1191900.v1.1 MD12G1076400.v1.1 MD12G1076700.v1.1 MD14G1074800.v1.1
prunus_persica	Prupe.7G056200_v2.0.a1 Prupe.7G056200_v2.0.a1 Prupe.7G056400_v2.0.a1 Prupe.7G056400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482931
rosa_laevigata	RLG00000023316
rosa_multiflora	Rmu_ssc0000175.1_g000016
rosa_roxburghii	Rroxscaffold_6G00398830
rosa_rugosa	Rorug03G0202100 Rorug03G0202100
rosa_samantha	Rh3AG251200 Rh3BG287700 Rh3CG285000 Rh3DG280700
rosa_wichuraiana	Rw3G022620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1451
AccBSI	CCGCTC	1 cut(s)	1345
AccII	CGCG	1 cut(s)	246
AccIII	TCCGGA	2 cut(s)	1221, 1405
AciI	CCGC	3 cut(s)	189, 645, 1343
AclWI	GGATC	3 cut(s)	607, 1587, 1654
AcoI	YGGCCR	1 cut(s)	943
AcsI	RAATTY	4 cut(s)	621, 1244, 1331, 1426
AdeI	CACNNNGTG	1 cut(s)	1045
AfaI	GTAC	3 cut(s)	709, 740, 1482
AfiI	CCNNNNNNNGG	5 cut(s)	188, 952, 1162, 1349, 1558
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	8 cut(s)	59, 143, 307, 594, 682, 908, 1309, 1366
AluBI	AGCT	8 cut(s)	470, 640, 675, 688, 959, 1237, 1433, 1565
AluI	AGCT	8 cut(s)	470, 640, 675, 688, 959, 1237, 1433, 1565
Alw21I	GWGCWC	1 cut(s)	972
Alw26I	GTCTC	4 cut(s)	29, 65, 118, 1597
AlwI	GGATC	3 cut(s)	607, 1587, 1654
Aor13HI	TCCGGA	2 cut(s)	1221, 1405
AoxI	GGCC	2 cut(s)	862, 943
ApeKI	GCWGC	5 cut(s)	685, 1101, 1178, 1181, 1433
ApoI	RAATTY	4 cut(s)	621, 1244, 1331, 1426
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
AspS9I	GGNCC	2 cut(s)	500, 1147
AsuHPI	GGTGA	5 cut(s)	266, 344, 1180, 1382, 1641
AvaII	GGWCC	2 cut(s)	500, 1147
BalI	TGGCCA	1 cut(s)	945
BanII	GRGCYC	1 cut(s)	229
BarI	GAAGNNNNNNTAC	2 cut(s)	1568, 1600
Bbv12I	GWGCWC	1 cut(s)	972
BbvI	GCAGC	5 cut(s)	697, 1088, 1165, 1168, 1420
BccI	CCATC	6 cut(s)	242, 511, 842, 1156, 1281, 1321
BceAI	ACGGC	2 cut(s)	690, 877
BcoDI	GTCTC	4 cut(s)	29, 65, 118, 1597
BfaI	CTAG	4 cut(s)	186, 194, 603, 726
BfuAI	ACCTGC	1 cut(s)	1451
BisI	GCNGC	5 cut(s)	686, 1102, 1179, 1182, 1434
BlsI	GCNGC	5 cut(s)	687, 1103, 1180, 1183, 1435
Bme18I	GGWCC	2 cut(s)	500, 1147
BmgT120I	GGNCC	2 cut(s)	500, 1147
BmiI	GGNNCC	2 cut(s)	790, 1149
BmsI	GCATC	4 cut(s)	373, 589, 1148, 1194
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BsaBI	GATNNNNATC	1 cut(s)	1166
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	1348
BsaWI	WCCGGW	3 cut(s)	1221, 1405, 1608
BsaXI	ACNNNNNCTCC	2 cut(s)	1603, 1633
Bsc4I	CCNNNNNNNGG	5 cut(s)	188, 952, 1162, 1349, 1558
Bse1I	ACTGG	1 cut(s)	749
Bse3DI	GCAATG	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	1166
BseAI	TCCGGA	2 cut(s)	1221, 1405
BseDI	CCNNGG	1 cut(s)	1348
BseGI	GGATG	4 cut(s)	1178, 1292, 1332, 1377
BseJI	GATNNNNATC	1 cut(s)	1166
BseLI	CCNNNNNNNGG	5 cut(s)	188, 952, 1162, 1349, 1558
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	3 cut(s)	60, 221, 1451
BseNI	ACTGG	1 cut(s)	749
BseRI	GAGGAG	2 cut(s)	136, 308
BseXI	GCAGC	5 cut(s)	697, 1088, 1165, 1168, 1420
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	2 cut(s)	864, 945
BsiHKAI	GWGCWC	1 cut(s)	972
BsiSI	CCGG	3 cut(s)	1222, 1406, 1609
BslFI	GGGAC	3 cut(s)	66, 568, 1133
BslI	CCNNNNNNNGG	5 cut(s)	188, 952, 1162, 1349, 1558
BsmAI	GTCTC	4 cut(s)	29, 65, 118, 1597
BsmFI	GGGAC	3 cut(s)	66, 568, 1133
BsnI	GGCC	2 cut(s)	864, 945
Bso31I	GGTCTC	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	229, 972
Bsp13I	TCCGGA	2 cut(s)	1221, 1405
Bsp143I	GATC	7 cut(s)	310, 549, 612, 1374, 1499, 1579, 1646
Bsp68I	TCGCGA	1 cut(s)	246
BspACI	CCGC	3 cut(s)	189, 645, 1343
BspANI	GGCC	2 cut(s)	864, 945
BspCNI	CTCAG	3 cut(s)	61, 222, 1452
BspEI	TCCGGA	2 cut(s)	1221, 1405
BspFNI	CGCG	1 cut(s)	246
BspHI	TCATGA	2 cut(s)	867, 1197
BspLI	GGNNCC	2 cut(s)	790, 1149
BspMI	ACCTGC	1 cut(s)	1451
BspPI	GGATC	3 cut(s)	607, 1587, 1654
BspTNI	GGTCTC	1 cut(s)	29
BsrBI	CCGCTC	1 cut(s)	1345
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	749
BssECI	CCNNGG	1 cut(s)	1348
BssMI	GATC	7 cut(s)	310, 549, 612, 1374, 1499, 1579, 1646
BssT1I	CCWWGG	1 cut(s)	1348
Bst4CI	ACNGT	2 cut(s)	340, 1192
Bst6I	CTCTTC	6 cut(s)	6, 27, 308, 540, 1595, 1597
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	7 cut(s)	69, 128, 230, 1274, 1416, 1450, 1460
BstF5I	GGATG	4 cut(s)	1178, 1292, 1332, 1377
BstFNI	CGCG	1 cut(s)	246
BstKTI	GATC	7 cut(s)	313, 552, 615, 1377, 1502, 1582, 1649
BstMAI	GTCTC	4 cut(s)	29, 65, 118, 1597
BstMBI	GATC	7 cut(s)	310, 549, 612, 1374, 1499, 1579, 1646
BstMWI	GCNNNNNNNGC	3 cut(s)	782, 1019, 1289
BstNSI	RCATGY	2 cut(s)	705, 724
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	5 cut(s)	697, 1088, 1165, 1168, 1420
BsuRI	GGCC	2 cut(s)	864, 945
BtgZI	GCGATG	1 cut(s)	261
BtsCI	GGATG	4 cut(s)	1178, 1292, 1332, 1377
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	1 cut(s)	783
BtuMI	TCGCGA	1 cut(s)	246
BveI	ACCTGC	1 cut(s)	1451
Cac8I	GCNNGC	1 cut(s)	244
CciI	TCATGA	2 cut(s)	867, 1197
Cfr13I	GGNCC	2 cut(s)	500, 1147
Csp6I	GTAC	3 cut(s)	708, 739, 1481
CviAII	CATG	9 cut(s)	161, 702, 721, 868, 1009, 1042, 1198, 1318, 1553
CviQI	GTAC	3 cut(s)	708, 739, 1481
DdeI	CTNAG	7 cut(s)	69, 128, 230, 1274, 1416, 1450, 1460
DpnI	GATC	7 cut(s)	312, 551, 614, 1376, 1501, 1581, 1648
DpnII	GATC	7 cut(s)	310, 549, 612, 1374, 1499, 1579, 1646
DraIII	CACNNNGTG	1 cut(s)	1045
EaeI	YGGCCR	1 cut(s)	943
Eam1104I	CTCTTC	6 cut(s)	6, 27, 308, 540, 1595, 1597
EarI	CTCTTC	6 cut(s)	6, 27, 308, 540, 1595, 1597
Eco130I	CCWWGG	1 cut(s)	1348
Eco24I	GRGCYC	1 cut(s)	229
Eco31I	GGTCTC	1 cut(s)	29
Eco32I	GATATC	1 cut(s)	733
Eco47I	GGWCC	2 cut(s)	500, 1147
EcoRV	GATATC	1 cut(s)	733
EcoT14I	CCWWGG	1 cut(s)	1348
EcoT38I	GRGCYC	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	1348
FaeI	CATG	9 cut(s)	164, 705, 724, 871, 1012, 1045, 1201, 1321, 1556
FalI	AAGNNNNNCTT	2 cut(s)	1626, 1658
FaqI	GGGAC	3 cut(s)	66, 568, 1133
FatI	CATG	9 cut(s)	160, 701, 720, 867, 1008, 1041, 1197, 1317, 1552
FauI	CCCGC	1 cut(s)	1350
Fnu4HI	GCNGC	5 cut(s)	686, 1102, 1179, 1182, 1434
FokI	GGATG	4 cut(s)	1185, 1299, 1339, 1364
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	5 cut(s)	686, 1102, 1179, 1182, 1434
FspBI	CTAG	4 cut(s)	186, 194, 603, 726
GluI	GCNGC	5 cut(s)	686, 1102, 1179, 1182, 1434
HaeIII	GGCC	2 cut(s)	864, 945
HapII	CCGG	3 cut(s)	1222, 1406, 1609
Hin1II	CATG	9 cut(s)	164, 705, 724, 871, 1012, 1045, 1201, 1321, 1556
HindIII	AAGCTT	2 cut(s)	638, 957
HinfI	GANTC	4 cut(s)	1090, 1337, 1464, 1612
HpaII	CCGG	3 cut(s)	1222, 1406, 1609
HphI	GGTGA	5 cut(s)	266, 344, 1180, 1382, 1641
Hpy166II	GTNNAC	1 cut(s)	693
Hpy188I	TCNGA	9 cut(s)	231, 350, 382, 402, 448, 1089, 1172, 1385, 1461
Hpy8I	GTNNAC	1 cut(s)	693
Hpy99I	CGWCG	1 cut(s)	1004
HpyAV	CCTTC	9 cut(s)	246, 355, 440, 802, 1112, 1218, 1360, 1570, 1631
HpyCH4III	ACNGT	2 cut(s)	340, 1192
HpyCH4IV	ACGT	1 cut(s)	765
HpyCH4V	TGCA	4 cut(s)	138, 1048, 1104, 1139
HpyF10VI	GCNNNNNNNGC	3 cut(s)	782, 1019, 1289
HpyF3I	CTNAG	7 cut(s)	69, 128, 230, 1274, 1416, 1450, 1460
HpySE526I	ACGT	1 cut(s)	765
Hsp92II	CATG	9 cut(s)	164, 705, 724, 871, 1012, 1045, 1201, 1321, 1556
Kpn2I	TCCGGA	2 cut(s)	1221, 1405
Kzo9I	GATC	7 cut(s)	310, 549, 612, 1374, 1499, 1579, 1646
LmnI	GCTCC	2 cut(s)	321, 1350
Lsp1109I	GCAGC	5 cut(s)	697, 1088, 1165, 1168, 1420
LweI	GCATC	4 cut(s)	373, 589, 1148, 1194
MaeI	CTAG	4 cut(s)	186, 194, 603, 726
MaeII	ACGT	1 cut(s)	765
MaeIII	GTNAC	2 cut(s)	1111, 1186
MalI	GATC	7 cut(s)	312, 551, 614, 1376, 1501, 1581, 1648
MbiI	CCGCTC	1 cut(s)	1345
MboI	GATC	7 cut(s)	310, 549, 612, 1374, 1499, 1579, 1646
MfeI	CAATTG	1 cut(s)	825
MhlI	GDGCHC	2 cut(s)	229, 972
MlsI	TGGCCA	1 cut(s)	945
MluNI	TGGCCA	1 cut(s)	945
MlyI	GAGTC	2 cut(s)	1331, 1606
MmeI	TCCRAC	3 cut(s)	425, 471, 999
Mox20I	TGGCCA	1 cut(s)	945
MroI	TCCGGA	2 cut(s)	1221, 1405
MscI	TGGCCA	1 cut(s)	945
MseI	TTAA	3 cut(s)	149, 297, 749
MslI	CAYNNNNRTG	2 cut(s)	700, 1202
Msp20I	TGGCCA	1 cut(s)	945
MspA1I	CMGCKG	1 cut(s)	688
MspI	CCGG	3 cut(s)	1222, 1406, 1609
MunI	CAATTG	1 cut(s)	825
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	3 cut(s)	782, 1019, 1289
NdeII	GATC	7 cut(s)	310, 549, 612, 1374, 1499, 1579, 1646
NlaIII	CATG	9 cut(s)	164, 705, 724, 871, 1012, 1045, 1201, 1321, 1556
NlaIV	GGNNCC	2 cut(s)	790, 1149
NmuCI	GTSAC	2 cut(s)	1111, 1186
NruI	TCGCGA	1 cut(s)	246
NspI	RCATGY	2 cut(s)	705, 724
PagI	TCATGA	2 cut(s)	867, 1197
PciI	ACATGT	1 cut(s)	720
PfeI	GAWTC	2 cut(s)	1090, 1464
PkrI	GCNGC	5 cut(s)	687, 1103, 1180, 1183, 1435
PleI	GAGTC	2 cut(s)	1331, 1606
PpsI	GAGTC	2 cut(s)	1331, 1606
PscI	ACATGT	1 cut(s)	720
PspN4I	GGNNCC	2 cut(s)	790, 1149
PspPI	GGNCC	2 cut(s)	500, 1147
PvuII	CAGCTG	1 cut(s)	688
RruI	TCGCGA	1 cut(s)	246
RsaI	GTAC	3 cut(s)	709, 740, 1482
RsaNI	GTAC	3 cut(s)	708, 739, 1481
RseI	CAYNNNNRTG	2 cut(s)	700, 1202
SaqAI	TTAA	3 cut(s)	149, 297, 749
SatI	GCNGC	5 cut(s)	686, 1102, 1179, 1182, 1434
Sau3AI	GATC	7 cut(s)	310, 549, 612, 1374, 1499, 1579, 1646
Sau96I	GGNCC	2 cut(s)	500, 1147
SchI	GAGTC	2 cut(s)	1331, 1606
SduI	GDGCHC	2 cut(s)	229, 972
SfaNI	GCATC	4 cut(s)	373, 589, 1148, 1194
SinI	GGWCC	2 cut(s)	500, 1147
SmiMI	CAYNNNNRTG	2 cut(s)	700, 1202
SsiI	CCGC	3 cut(s)	189, 645, 1343
SspI	AATATT	1 cut(s)	147
SspMI	CTAG	4 cut(s)	186, 194, 603, 726
StyI	CCWWGG	1 cut(s)	1348
TaaI	ACNGT	2 cut(s)	340, 1192
TaiI	ACGT	1 cut(s)	768
TaqI	TCGA	2 cut(s)	433, 1598
TfiI	GAWTC	2 cut(s)	1090, 1464
Tru1I	TTAA	3 cut(s)	149, 297, 749
Tru9I	TTAA	3 cut(s)	149, 297, 749
TscAI	CASTG	1 cut(s)	783
TseFI	GTSAC	2 cut(s)	1111, 1186
TseI	GCWGC	5 cut(s)	685, 1101, 1178, 1181, 1433
Tsp45I	GTSAC	2 cut(s)	1111, 1186
TspDTI	ATGAA	9 cut(s)	192, 195, 506, 545, 844, 970, 975, 1456, 1557
TspGWI	ACGGA	2 cut(s)	647, 1611
TspRI	CASTG	1 cut(s)	783
VpaK11BI	GGWCC	2 cut(s)	500, 1147
XapI	RAATTY	4 cut(s)	621, 1244, 1331, 1426
XbaI	TCTAGA	2 cut(s)	193, 725
XceI	RCATGY	2 cut(s)	705, 724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1248
XspI	CTAG	4 cut(s)	186, 194, 603, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.