Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000175.1

Orthogroup ID

OG0011579

Physical Location & Seq

Genomic Coordinates Forward (+)

51538 .. 55307

Gene Structure 3770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000175.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

atggagagtcatcgcggtgagatgtggtaccgaagcaaaggcagcgagggtgggcccaactggaagaaggcggtgtctaagggggccattggtgggatgaagacgtcttatgtgactcaagaagacatatttctgggatcactcactgtaagagaaactcttacatattcagctcatttgaggcttccttccaaaatgacaacacgagagaaaaatgaggttgtggaagagaccctcaccaaaatgggtcttcaaaattgcgctgagagtcatattgggaactggcatttgagaggtataagtaatggagaaaagaggagacttagcatttgtattgaaatattaacacagcctcatgtgttgttgcttgatgaacccactagcggtctagatagtgcttcatctttctttgtgatatgggcattgagaaacattgctcaggatggaaggatagtcatttgctctattcaccaaccaagtagtgatgtctttaatctcttcaatgatctcgtcctcatagcaggaggtgaaactgtttattttggagaggcacttaaggctgtaaaggaaaacctttccatgaaatcaaacatagacaatagtattagctggtggaagcagctgtggacattgacccgccgaacttcgctcaacatgtctagagatattgggtactattggttaagggctgtgttttacattctcatagcagtgagtgctggttccttcttttatcatattgggacaagtagtcaagcaattgtttcaagaggaaaatgtgatggtttcatttacggcctcatgatttgcttgtccattggaggcataccctttgttattgaagaattaaaggtgtttaggcgtgaaagacttggtggccactatggggaagctttgtttgtgctctccaacttcatttcatcactgcctttcgtggttctcatggctttctctgctggaacaatactctattacatggtgaaatttcataccgggttctctcattacttgtatttttgtatgaatctcttgtgctgcattgtggtcacagaaggcaccgccttgattgttgcagctcttgttccaaacctcttgatgggcataggatgtgctgctgctctcaccggtcagttgaagaatgacatgattgggattgaatttgattccccagtccaaggagaacccaagttgaagggtgagatcatcctccgagaaatgtttgggataaatcccgaaagttccaagtggtggaatttggctgctcttgcctgcctcttagttggtctgagactcatcttttatgtggcactaaaatacaaggagagatcatcattttttttccagaaactctatgccaagaggaccaccttccaaaaccatgtcaaggtagcttcattcaggaaggatcaatttatctcctcctcgaagagacaccggactcttactccgttatcttctcaagagggtctcggatcaccacttccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

495

Amino Acids

55.47

Weight (kDa)

9.13

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011579)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24260
malus_domestica	MD00G1191900.v1.1 MD12G1076400.v1.1 MD12G1076700.v1.1 MD14G1074800.v1.1
prunus_persica	Prupe.7G056200_v2.0.a1 Prupe.7G056200_v2.0.a1 Prupe.7G056400_v2.0.a1 Prupe.7G056400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482931
rosa_laevigata	RLG00000023316
rosa_multiflora	Rmu_ssc0000175.1_g000016
rosa_roxburghii	Rroxscaffold_6G00398830
rosa_rugosa	Rorug03G0202100 Rorug03G0202100
rosa_samantha	Rh3AG251200 Rh3BG287700 Rh3CG285000 Rh3DG280700
rosa_wichuraiana	Rw3G022620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	107
Acc65I	GGTACC	1 cut(s)	27
AccB1I	GGYRCC	2 cut(s)	27, 1055
AccB7I	CCANNNNNTGG	1 cut(s)	1248
AccII	CGCG	1 cut(s)	15
AciI	CCGC	5 cut(s)	15, 71, 384, 637, 1059
AclWI	GGATC	3 cut(s)	145, 1413, 1480
AcoI	YGGCCR	1 cut(s)	877
AcsI	RAATTY	3 cut(s)	983, 1157, 1252
AcyI	GRCGYC	1 cut(s)	104
AfaI	GTAC	2 cut(s)	29, 674
AfiI	CCNNNNNNNGG	7 cut(s)	93, 383, 886, 1096, 1175, 1248, 1384
AflII	CTTAAG	1 cut(s)	554
AflIII	ACRYGT	1 cut(s)	654
AgeI	ACCGGT	1 cut(s)	1124
AgsI	TTSAA	8 cut(s)	254, 338, 502, 768, 842, 1135, 1157, 1192
AhdI	GACNNNNNGTC	1 cut(s)	750
AluBI	AGCT	6 cut(s)	173, 609, 622, 893, 1076, 1391
AluI	AGCT	6 cut(s)	173, 609, 622, 893, 1076, 1391
Alw21I	GWGCWC	1 cut(s)	906
Alw26I	GTCTC	5 cut(s)	224, 313, 1282, 1423, 1472
AlwI	GGATC	3 cut(s)	145, 1413, 1480
AoxI	GGCC	4 cut(s)	53, 84, 796, 877
ApaI	GGGCCC	1 cut(s)	57
ApeKI	GCWGC	7 cut(s)	42, 619, 1035, 1073, 1112, 1115, 1259
ApoI	RAATTY	3 cut(s)	983, 1157, 1252
ArsI	GACNNNNNNTTYG	2 cut(s)	312, 344
AsiGI	ACCGGT	1 cut(s)	1124
Asp718I	GGTACC	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	4 cut(s)	53, 54, 84, 1362
AsuC2I	CCSGG	1 cut(s)	994
AsuHPI	GGTGA	8 cut(s)	29, 229, 461, 539, 991, 1114, 1208, 1467
AvaII	GGWCC	1 cut(s)	1362
BaeGI	GKGCMC	1 cut(s)	57
BalI	TGGCCA	1 cut(s)	879
BanI	GGYRCC	2 cut(s)	27, 1055
BanII	GRGCYC	1 cut(s)	57
BauI	CACGAG	1 cut(s)	204
BbsI	GAAGAC	3 cut(s)	107, 129, 242
Bbv12I	GWGCWC	1 cut(s)	906
BbvI	GCAGC	7 cut(s)	54, 631, 1022, 1085, 1099, 1102, 1246
BccI	CCATC	3 cut(s)	437, 776, 1090
BceAI	ACGGC	1 cut(s)	811
BcnI	CCSGG	1 cut(s)	994
BcoDI	GTCTC	5 cut(s)	224, 313, 1282, 1423, 1472
BfaI	CTAG	3 cut(s)	381, 389, 660
BfrI	CTTAAG	1 cut(s)	554
BisI	GCNGC	7 cut(s)	43, 620, 1036, 1074, 1113, 1116, 1260
BlsI	GCNGC	7 cut(s)	44, 621, 1037, 1075, 1114, 1117, 1261
Bme1390I	CCNGG	1 cut(s)	994
Bme18I	GGWCC	1 cut(s)	1362
BmeRI	GACNNNNNGTC	1 cut(s)	750
BmgT120I	GGNCC	4 cut(s)	53, 54, 84, 1362
BmiI	GGNNCC	5 cut(s)	29, 55, 85, 724, 1057
BmrFI	CCNGG	1 cut(s)	994
BmrI	ACTGGG	1 cut(s)	1163
BmuI	ACTGGG	1 cut(s)	1163
BpiI	GAAGAC	3 cut(s)	107, 129, 242
Bpu10I	CCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	2 cut(s)	102, 1443
BpuMI	CCSGG	1 cut(s)	994
BsaHI	GRCGYC	1 cut(s)	104
BsaI	GGTCTC	2 cut(s)	224, 1472
BsaJI	CCNNGG	1 cut(s)	1174
BsaWI	WCCGGW	2 cut(s)	1124, 1434
BsaXI	ACNNNNNCTCC	2 cut(s)	1429, 1459
Bsc4I	CCNNNNNNNGG	7 cut(s)	93, 383, 886, 1096, 1175, 1248, 1384
Bse118I	RCCGGY	1 cut(s)	1124
Bse1I	ACTGG	3 cut(s)	65, 287, 1169
Bse3DI	GCAATG	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	1174
BseGI	GGATG	4 cut(s)	102, 448, 1112, 1203
BseLI	CCNNNNNNNGG	7 cut(s)	93, 383, 886, 1096, 1175, 1248, 1384
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	3 cut(s)	255, 452, 1277
BseNI	ACTGG	3 cut(s)	65, 287, 1169
BseRI	GAGGAG	3 cut(s)	331, 1408, 1411
BseSI	GKGCMC	1 cut(s)	57
BseXI	GCAGC	7 cut(s)	54, 631, 1022, 1085, 1099, 1102, 1246
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	4 cut(s)	55, 86, 798, 879
BshNI	GGYRCC	2 cut(s)	27, 1055
BshTI	ACCGGT	1 cut(s)	1124
BsiHKAI	GWGCWC	1 cut(s)	906
BsiSI	CCGG	3 cut(s)	993, 1125, 1435
BslFI	GGGAC	1 cut(s)	757
BslI	CCNNNNNNNGG	7 cut(s)	93, 383, 886, 1096, 1175, 1248, 1384
BsmAI	GTCTC	5 cut(s)	224, 313, 1282, 1423, 1472
BsmFI	GGGAC	1 cut(s)	757
BsnI	GGCC	4 cut(s)	55, 86, 798, 879
Bso31I	GGTCTC	2 cut(s)	224, 1472
Bsp120I	GGGCCC	1 cut(s)	53
Bsp1286I	GDGCHC	2 cut(s)	57, 906
Bsp143I	GATC	6 cut(s)	137, 505, 1200, 1325, 1405, 1472
BspACI	CCGC	5 cut(s)	15, 71, 384, 637, 1059
BspANI	GGCC	4 cut(s)	55, 86, 798, 879
BspCNI	CTCAG	3 cut(s)	256, 451, 1278
BspFNI	CGCG	1 cut(s)	15
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	5 cut(s)	29, 55, 85, 724, 1057
BspPI	GGATC	3 cut(s)	145, 1413, 1480
BspT107I	GGYRCC	2 cut(s)	27, 1055
BspTI	CTTAAG	1 cut(s)	554
BspTNI	GGTCTC	2 cut(s)	224, 1472
BsrDI	GCAATG	1 cut(s)	432
BsrFI	RCCGGY	1 cut(s)	1124
BsrI	ACTGG	3 cut(s)	65, 287, 1169
BssAI	RCCGGY	1 cut(s)	1124
BssECI	CCNNGG	1 cut(s)	1174
BssMI	GATC	6 cut(s)	137, 505, 1200, 1325, 1405, 1472
BssNI	GRCGYC	1 cut(s)	104
BssSI	CACGAG	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	1174
Bst2BI	CACGAG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	148, 535
Bst6I	CTCTTC	3 cut(s)	222, 503, 1421
BstACI	GRCGYC	1 cut(s)	104
BstAFI	CTTAAG	1 cut(s)	554
BstAPI	GCANNNNNTGC	1 cut(s)	716
BstC8I	GCNNGC	1 cut(s)	1270
BstDEI	CTNAG	6 cut(s)	78, 264, 323, 438, 1276, 1286
BstF5I	GGATG	4 cut(s)	102, 448, 1112, 1203
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	6 cut(s)	140, 508, 1203, 1328, 1408, 1475
BstMAI	GTCTC	5 cut(s)	224, 313, 1282, 1423, 1472
BstMBI	GATC	6 cut(s)	137, 505, 1200, 1325, 1405, 1472
BstMWI	GCNNNNNNNGC	5 cut(s)	42, 557, 716, 953, 1265
BstNSI	RCATGY	1 cut(s)	658
BstSCI	CCNGG	1 cut(s)	992
BstSLI	GKGCMC	1 cut(s)	57
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	7 cut(s)	54, 631, 1022, 1085, 1099, 1102, 1246
BstV2I	GAAGAC	3 cut(s)	107, 129, 242
BsuRI	GGCC	4 cut(s)	55, 86, 798, 879
BtsCI	GGATG	4 cut(s)	102, 448, 1112, 1203
BtsI	GCAGTG	2 cut(s)	717, 923
BtsIMutI	CAGTG	3 cut(s)	144, 717, 923
Cac8I	GCNNGC	1 cut(s)	1270
CciI	TCATGA	1 cut(s)	801
CfoI	GCGC	1 cut(s)	263
Cfr10I	RCCGGY	1 cut(s)	1124
Cfr13I	GGNCC	4 cut(s)	53, 54, 84, 1362
Csp6I	GTAC	2 cut(s)	28, 673
CspAI	ACCGGT	1 cut(s)	1124
CviAII	CATG	8 cut(s)	356, 580, 655, 802, 943, 976, 1144, 1379
CviQI	GTAC	2 cut(s)	28, 673
DdeI	CTNAG	6 cut(s)	78, 264, 323, 438, 1276, 1286
DpnI	GATC	6 cut(s)	139, 507, 1202, 1327, 1407, 1474
DpnII	GATC	6 cut(s)	137, 505, 1200, 1325, 1405, 1472
DriI	GACNNNNNGTC	1 cut(s)	750
EaeI	YGGCCR	1 cut(s)	877
Eam1104I	CTCTTC	3 cut(s)	222, 503, 1421
Eam1105I	GACNNNNNGTC	1 cut(s)	750
EarI	CTCTTC	3 cut(s)	222, 503, 1421
Eco130I	CCWWGG	1 cut(s)	1174
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	2 cut(s)	224, 1472
Eco47I	GGWCC	1 cut(s)	1362
EcoT14I	CCWWGG	1 cut(s)	1174
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	1174
FaeI	CATG	8 cut(s)	359, 583, 658, 805, 946, 979, 1147, 1382
FaqI	GGGAC	1 cut(s)	757
FatI	CATG	8 cut(s)	355, 579, 654, 801, 942, 975, 1143, 1378
FauI	CCCGC	1 cut(s)	644
Fnu4HI	GCNGC	7 cut(s)	43, 620, 1036, 1074, 1113, 1116, 1260
FokI	GGATG	4 cut(s)	109, 455, 1119, 1190
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	7 cut(s)	43, 620, 1036, 1074, 1113, 1116, 1260
FspBI	CTAG	3 cut(s)	381, 389, 660
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	7 cut(s)	43, 620, 1036, 1074, 1113, 1116, 1260
HaeIII	GGCC	4 cut(s)	55, 86, 798, 879
HapII	CCGG	3 cut(s)	993, 1125, 1435
HhaI	GCGC	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	8 cut(s)	359, 583, 658, 805, 946, 979, 1147, 1382
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HindIII	AAGCTT	1 cut(s)	891
HinfI	GANTC	7 cut(s)	7, 115, 268, 1024, 1163, 1290, 1438
HpaII	CCGG	3 cut(s)	993, 1125, 1435
HphI	GGTGA	8 cut(s)	29, 229, 461, 539, 991, 1114, 1208, 1467
Hpy166II	GTNNAC	1 cut(s)	627
Hpy188I	TCNGA	3 cut(s)	1211, 1287, 1472
Hpy8I	GTNNAC	1 cut(s)	627
HpyAV	CCTTC	8 cut(s)	61, 198, 441, 736, 1046, 1186, 1378, 1396
HpyCH4III	ACNGT	2 cut(s)	148, 535
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	2 cut(s)	1038, 1073
HpyF10VI	GCNNNNNNNGC	5 cut(s)	42, 557, 716, 953, 1265
HpyF3I	CTNAG	6 cut(s)	78, 264, 323, 438, 1276, 1286
HpySE526I	ACGT	1 cut(s)	104
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	8 cut(s)	359, 583, 658, 805, 946, 979, 1147, 1382
HspAI	GCGC	1 cut(s)	261
KpnI	GGTACC	1 cut(s)	31
Kzo9I	GATC	6 cut(s)	137, 505, 1200, 1325, 1405, 1472
Lsp1109I	GCAGC	7 cut(s)	54, 631, 1022, 1085, 1099, 1102, 1246
MaeI	CTAG	3 cut(s)	381, 389, 660
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	2 cut(s)	112, 1045
MalI	GATC	6 cut(s)	139, 507, 1202, 1327, 1407, 1474
MboI	GATC	6 cut(s)	137, 505, 1200, 1325, 1405, 1472
MfeI	CAATTG	1 cut(s)	759
MhlI	GDGCHC	2 cut(s)	57, 906
MlsI	TGGCCA	1 cut(s)	879
MluCI	AATT	7 cut(s)	256, 759, 845, 983, 1157, 1252, 1409
MluNI	TGGCCA	1 cut(s)	879
MlyI	GAGTC	5 cut(s)	16, 109, 277, 1284, 1432
MmeI	TCCRAC	1 cut(s)	933
Mox20I	TGGCCA	1 cut(s)	879
MscI	TGGCCA	1 cut(s)	879
MseI	TTAA	5 cut(s)	344, 492, 555, 683, 848
MslI	CAYNNNNRTG	3 cut(s)	15, 242, 710
Msp20I	TGGCCA	1 cut(s)	879
MspA1I	CMGCKG	1 cut(s)	622
MspCI	CTTAAG	1 cut(s)	554
MspI	CCGG	3 cut(s)	993, 1125, 1435
MspR9I	CCNGG	1 cut(s)	994
MunI	CAATTG	1 cut(s)	759
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	5 cut(s)	42, 557, 716, 953, 1265
NciI	CCSGG	1 cut(s)	994
NdeII	GATC	6 cut(s)	137, 505, 1200, 1325, 1405, 1472
NlaIII	CATG	8 cut(s)	359, 583, 658, 805, 946, 979, 1147, 1382
NlaIV	GGNNCC	5 cut(s)	29, 55, 85, 724, 1057
NmuCI	GTSAC	2 cut(s)	112, 1045
NspI	RCATGY	1 cut(s)	658
PagI	TCATGA	1 cut(s)	801
PciI	ACATGT	1 cut(s)	654
PfeI	GAWTC	2 cut(s)	1024, 1163
PflMI	CCANNNNNTGG	1 cut(s)	1248
PinAI	ACCGGT	1 cut(s)	1124
PkrI	GCNGC	7 cut(s)	44, 621, 1037, 1075, 1114, 1117, 1261
PleI	GAGTC	5 cut(s)	15, 109, 276, 1284, 1432
PpsI	GAGTC	5 cut(s)	15, 109, 276, 1284, 1432
PscI	ACATGT	1 cut(s)	654
PspN4I	GGNNCC	5 cut(s)	29, 55, 85, 724, 1057
PspOMI	GGGCCC	1 cut(s)	53
PspPI	GGNCC	4 cut(s)	53, 54, 84, 1362
PvuII	CAGCTG	1 cut(s)	622
RsaI	GTAC	2 cut(s)	29, 674
RsaNI	GTAC	2 cut(s)	28, 673
RseI	CAYNNNNRTG	3 cut(s)	15, 242, 710
SaqAI	TTAA	5 cut(s)	344, 492, 555, 683, 848
SatI	GCNGC	7 cut(s)	43, 620, 1036, 1074, 1113, 1116, 1260
Sau3AI	GATC	6 cut(s)	137, 505, 1200, 1325, 1405, 1472
Sau96I	GGNCC	4 cut(s)	53, 54, 84, 1362
SchI	GAGTC	5 cut(s)	16, 109, 277, 1284, 1432
ScrFI	CCNGG	1 cut(s)	994
SduI	GDGCHC	2 cut(s)	57, 906
SinI	GGWCC	1 cut(s)	1362
SmiMI	CAYNNNNRTG	3 cut(s)	15, 242, 710
SmlI	CTYRAG	3 cut(s)	117, 554, 1458
SmoI	CTYRAG	3 cut(s)	117, 554, 1458
Sse9I	AATT	7 cut(s)	256, 759, 845, 983, 1157, 1252, 1409
SsiI	CCGC	5 cut(s)	15, 71, 384, 637, 1059
SspI	AATATT	1 cut(s)	342
SspMI	CTAG	3 cut(s)	381, 389, 660
StyD4I	CCNGG	1 cut(s)	992
StyI	CCWWGG	1 cut(s)	1174
TaaI	ACNGT	2 cut(s)	148, 535
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	1 cut(s)	1424
TasI	AATT	7 cut(s)	256, 759, 845, 983, 1157, 1252, 1409
TfiI	GAWTC	2 cut(s)	1024, 1163
Tru1I	TTAA	5 cut(s)	344, 492, 555, 683, 848
Tru9I	TTAA	5 cut(s)	344, 492, 555, 683, 848
TscAI	CASTG	3 cut(s)	151, 717, 930
TseFI	GTSAC	2 cut(s)	112, 1045
TseI	GCWGC	7 cut(s)	42, 619, 1035, 1073, 1112, 1115, 1259
Tsp45I	GTSAC	2 cut(s)	112, 1045
TspGWI	ACGGA	1 cut(s)	1437
TspRI	CASTG	3 cut(s)	151, 717, 930
Van91I	CCANNNNNTGG	1 cut(s)	1248
Vha464I	CTTAAG	1 cut(s)	554
VpaK11BI	GGWCC	1 cut(s)	1362
XapI	RAATTY	3 cut(s)	983, 1157, 1252
XbaI	TCTAGA	2 cut(s)	388, 659
XceI	RCATGY	1 cut(s)	658
XspI	CTAG	3 cut(s)	381, 389, 660
ZraI	GACGTC	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.