MD00G1191900.v1.1

ABC transporter G family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0011579
Physical Location & Seq
Reverse (-)
46499591 .. 46500628
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1191900.v1.1.491

Sequence Viewer

Length: 780 bp
ATGCAAGTATTTAGGCAGGAAAGACTTGGCGGGCATTATGGGGAAGCTTTGTTTGTGCTCTCCAACTTCCTCTCCTCACTCCCTTTCGTGGTTGGCATGGCTTTCTCTTCTGGAACAATACTATACCACATGGTCAAATTTCACACAGGATTCTCTCATTACTTGTATTTTTGCATCAATCTCTTATGCTGCATTGCTGTCACAGAAGGAACCGCTTTAATTACGGCAGCACTGGTTCCCAACCTCTTGATGGCCATAGGAGTTGCAGCCGGCATAACTGTATTCATGATGATGCCATCTCTTCTTTCCCGGATGATGGTTGACCTACCAAAAATCTTTTGGCGATATCCCATGTCATACCTCAGCTATGCAGCATGGTCAATACAGTTACGAAGTACTAAATATTTCCGAGATGCTATGGGTCAGTACAAGAATGACATGATTGGGCTGGAATTTGACCCTCTAGTGGTTGGAGATCCAAAGCTGAAAGGTGAGGATGTACTCCTTCACTTGTATGGGATAAACCCTGAGGTTTCCAAATGGTGGGATTTGGCTGCTTTGGCATGCTTGTTACTTTGTGTCAAAGTCATCTTTTACTTGTTGCTCAAGTACAAGGAGAGAGCCTCATTGTCTATACACAAACTCTTTGCAAAAGCAACCTTCCAACACCATTCCAAGAGAGGCTCATTGAAGAAGGAGCAATTTGTCTCCTATTCCAAGAGACACACAACTCTTCATCCATTATCTTCTCAAGAGGGTCTTGGATCACCACTTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran

Protein Analysis

260

Amino Acids

29.29

Weight (kDa)

9.29

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 2 - 129 2.3e-12 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 543
AciI CCGC 2 cut(s) 30, 213
AclWI GGATC 2 cut(s) 470, 772
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 2 cut(s) 137, 452
AfaI GTAC 4 cut(s) 397, 428, 501, 611
AfiI CCNNNNNNNGG 5 cut(s) 88, 250, 316, 466, 543
AgsI TTSAA 1 cut(s) 691
AluBI AGCT 3 cut(s) 47, 366, 484
AluI AGCT 3 cut(s) 47, 366, 484
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 2 cut(s) 712, 715
AlwI GGATC 2 cut(s) 470, 772
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 5 cut(s) 189, 227, 266, 371, 554
ApoI RAATTY 2 cut(s) 137, 452
AsuC2I CCSGG 1 cut(s) 310
AsuHPI GGTGA 2 cut(s) 503, 759
AxyI CCTNAGG 1 cut(s) 528
BalI TGGCCA 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 60
BbvCI CCTCAGC 1 cut(s) 362
BbvI GCAGC 5 cut(s) 176, 239, 278, 383, 541
BccI CCATC 3 cut(s) 244, 304, 310
BceAI ACGGC 1 cut(s) 240
BcnI CCSGG 1 cut(s) 310
BcoDI GTCTC 2 cut(s) 712, 715
BfaI CTAG 1 cut(s) 464
BisI GCNGC 5 cut(s) 190, 228, 267, 372, 555
BlsI GCNGC 5 cut(s) 191, 229, 268, 373, 556
BmcAI AGTACT 1 cut(s) 397
Bme1390I CCNGG 1 cut(s) 310
BmiI GGNNCC 2 cut(s) 211, 237
BmrFI CCNGG 1 cut(s) 310
BmsI GCATC 3 cut(s) 183, 282, 403
BplI GAGNNNNNCTC 2 cut(s) 608, 640
Bpu10I CCTNAGC 1 cut(s) 362
BpuEI CTTGAG 2 cut(s) 590, 735
BpuMI CCSGG 1 cut(s) 310
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 250, 316, 466, 543
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 237
Bse21I CCTNAGG 1 cut(s) 528
Bse3DI GCAATG 1 cut(s) 192
BseGI GGATG 3 cut(s) 318, 502, 736
BseLI CCNNNNNNNGG 5 cut(s) 88, 250, 316, 466, 543
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 2 cut(s) 376, 519
BseNI ACTGG 1 cut(s) 237
BseRI GAGGAG 1 cut(s) 64
BseXI GCAGC 5 cut(s) 176, 239, 278, 383, 541
BshFI GGCC 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 60
BsiSI CCGG 2 cut(s) 270, 310
BslI CCNNNNNNNGG 5 cut(s) 88, 250, 316, 466, 543
BsmAI GTCTC 2 cut(s) 712, 715
BsnI GGCC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 2 cut(s) 475, 764
BspACI CCGC 2 cut(s) 30, 213
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 2 cut(s) 375, 520
BspHI TCATGA 1 cut(s) 285
BspLI GGNNCC 2 cut(s) 211, 237
BspPI GGATC 2 cut(s) 470, 772
BsrDI GCAATG 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 269
BsrI ACTGG 1 cut(s) 237
BssAI RCCGGY 1 cut(s) 269
BssMI GATC 2 cut(s) 475, 764
Bst4CI ACNGT 2 cut(s) 280, 387
Bst6I CTCTTC 3 cut(s) 112, 306, 738
BstC8I GCNNGC 3 cut(s) 32, 271, 565
BstDEI CTNAG 2 cut(s) 362, 528
BstF5I GGATG 3 cut(s) 318, 502, 736
BstKTI GATC 2 cut(s) 478, 767
BstMAI GTCTC 2 cut(s) 712, 715
BstMBI GATC 2 cut(s) 475, 764
BstMWI GCNNNNNNNGC 1 cut(s) 560
BstNSI RCATGY 1 cut(s) 567
BstSCI CCNGG 1 cut(s) 308
BstV1I GCAGC 5 cut(s) 176, 239, 278, 383, 541
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
Bsu36I CCTNAGG 1 cut(s) 528
BsuRI GGCC 1 cut(s) 254
BtsCI GGATG 3 cut(s) 318, 502, 736
BtsIMutI CAGTG 1 cut(s) 230
Cac8I GCNNGC 3 cut(s) 32, 271, 565
CciI TCATGA 1 cut(s) 285
Cfr10I RCCGGY 1 cut(s) 269
Csp6I GTAC 4 cut(s) 396, 427, 500, 610
CviAII CATG 7 cut(s) 97, 130, 286, 352, 375, 439, 564
CviQI GTAC 4 cut(s) 396, 427, 500, 610
DdeI CTNAG 2 cut(s) 362, 528
DpnI GATC 2 cut(s) 477, 766
DpnII GATC 2 cut(s) 475, 764
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 3 cut(s) 112, 306, 738
EarI CTCTTC 3 cut(s) 112, 306, 738
Eco32I GATATC 1 cut(s) 347
Eco81I CCTNAGG 1 cut(s) 528
EcoRV GATATC 1 cut(s) 347
FaeI CATG 7 cut(s) 100, 133, 289, 355, 378, 442, 567
FalI AAGNNNNNCTT 2 cut(s) 744, 776
FatI CATG 7 cut(s) 96, 129, 285, 351, 374, 438, 563
FauI CCCGC 1 cut(s) 23
Fnu4HI GCNGC 5 cut(s) 190, 228, 267, 372, 555
FokI GGATG 3 cut(s) 325, 509, 723
Fsp4HI GCNGC 5 cut(s) 190, 228, 267, 372, 555
FspBI CTAG 1 cut(s) 464
GluI GCNGC 5 cut(s) 190, 228, 267, 372, 555
HaeIII GGCC 1 cut(s) 254
HapII CCGG 2 cut(s) 270, 310
Hin1II CATG 7 cut(s) 100, 133, 289, 355, 378, 442, 567
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HindIII AAGCTT 1 cut(s) 45
HinfI GANTC 1 cut(s) 150
HpaII CCGG 2 cut(s) 270, 310
HphI GGTGA 2 cut(s) 503, 759
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 410
Hpy188III TCNNGA 4 cut(s) 111, 247, 286, 752
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 4 cut(s) 200, 515, 670, 688
HpyCH4III ACNGT 2 cut(s) 280, 387
HpyCH4V TGCA 6 cut(s) 4, 174, 192, 266, 371, 650
HpyF10VI GCNNNNNNNGC 1 cut(s) 560
HpyF3I CTNAG 2 cut(s) 362, 528
Hsp92II CATG 7 cut(s) 100, 133, 289, 355, 378, 442, 567
KroI GCCGGC 1 cut(s) 269
KroNI GCCGGC 1 cut(s) 271
Kzo9I GATC 2 cut(s) 475, 764
LmnI GCTCC 1 cut(s) 697
LpnPI CCDG 8 cut(s) 2, 96, 132, 218, 283, 323, 434, 540
Lsp1109I GCAGC 5 cut(s) 176, 239, 278, 383, 541
LweI GCATC 3 cut(s) 183, 282, 403
MaeI CTAG 1 cut(s) 464
MaeIII GTNAC 3 cut(s) 199, 387, 570
MalI GATC 2 cut(s) 477, 766
MboI GATC 2 cut(s) 475, 764
MboII GAAGA 5 cut(s) 99, 293, 703, 725, 738
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 1 cut(s) 60
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 4 cut(s) 137, 219, 452, 701
MluNI TGGCCA 1 cut(s) 254
MmeI TCCRAC 3 cut(s) 87, 451, 688
Mox20I TGGCCA 1 cut(s) 254
MroNI GCCGGC 1 cut(s) 269
MscI TGGCCA 1 cut(s) 254
MseI TTAA 1 cut(s) 218
MslI CAYNNNNRTG 2 cut(s) 290, 513
Msp20I TGGCCA 1 cut(s) 254
MspI CCGG 2 cut(s) 270, 310
MspR9I CCNGG 1 cut(s) 310
MwoI GCNNNNNNNGC 1 cut(s) 560
NaeI GCCGGC 1 cut(s) 271
NciI CCSGG 1 cut(s) 310
NdeII GATC 2 cut(s) 475, 764
NgoMIV GCCGGC 1 cut(s) 269
NlaIII CATG 7 cut(s) 100, 133, 289, 355, 378, 442, 567
NlaIV GGNNCC 2 cut(s) 211, 237
NmuCI GTSAC 1 cut(s) 199
NspI RCATGY 1 cut(s) 567
PaeI GCATGC 1 cut(s) 567
PagI TCATGA 1 cut(s) 285
PdiI GCCGGC 1 cut(s) 271
PfeI GAWTC 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 543
PfoI TCCNGGA 1 cut(s) 308
PkrI GCNGC 5 cut(s) 191, 229, 268, 373, 556
PspN4I GGNNCC 2 cut(s) 211, 237
PsuI RGATCY 1 cut(s) 475
RsaI GTAC 4 cut(s) 397, 428, 501, 611
RsaNI GTAC 4 cut(s) 396, 427, 500, 610
RseI CAYNNNNRTG 2 cut(s) 290, 513
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 5 cut(s) 190, 228, 267, 372, 555
Sau3AI GATC 2 cut(s) 475, 764
ScaI AGTACT 1 cut(s) 397
ScrFI CCNGG 1 cut(s) 310
SduI GDGCHC 1 cut(s) 60
SetI ASST 9 cut(s) 49, 246, 327, 363, 368, 486, 493, 534, 662
SfaNI GCATC 3 cut(s) 183, 282, 403
SmiMI CAYNNNNRTG 2 cut(s) 290, 513
SmlI CTYRAG 2 cut(s) 605, 750
SmoI CTYRAG 2 cut(s) 605, 750
SphI GCATGC 1 cut(s) 567
Sse9I AATT 4 cut(s) 137, 219, 452, 701
SsiI CCGC 2 cut(s) 30, 213
SspI AATATT 1 cut(s) 404
SspMI CTAG 1 cut(s) 464
StyD4I CCNGG 1 cut(s) 308
TaaI ACNGT 2 cut(s) 280, 387
TasI AATT 4 cut(s) 137, 219, 452, 701
TatI WGTACW 4 cut(s) 395, 426, 499, 609
TfiI GAWTC 1 cut(s) 150
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TscAI CASTG 1 cut(s) 237
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 5 cut(s) 189, 227, 266, 371, 554
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 274, 725
TspRI CASTG 1 cut(s) 237
Van91I CCANNNNNTGG 1 cut(s) 543
XapI RAATTY 2 cut(s) 137, 452
XceI RCATGY 1 cut(s) 567
XcmI CCANNNNNNNNNTGG 2 cut(s) 247, 336
XspI CTAG 1 cut(s) 464
ZrmI AGTACT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.