Rh3BG287700

ABC transporter G family member

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
28689532 .. 28695702
6171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG287700.1

Sequence Viewer

Length: 2037 bp
ATGGATGCAACTAGATCATCAACTGGGAAGTACTTGGTTTGGCAAGACTTGACGGTGGTTGCGCCAGCAGCAGCAACAAGTAGTGTAAGCAGATCAAAGTTGCTGTTAAATGGGGTTACTGGTTATGCACAACCCAATCGGATTATGGCCCTCATGGGTCCTTCTGGCTCTGGAAAATCCACCTTACTTGATGCCTTGGCTGGGAGGCTGCCTGCAAATGTTAGAATGTGCGGGGATGTTATACTCAATGGGAACAAAAGAAGCATAAACAGCACTGATATTTCTTATGTGACTCAAGAAGACATATTTCTGGGATCACTCACTGTAAGAGAAACTCTTACATATTCAGCTCATTTGAGGCTTCCTTCCAAAATGACAACACGAGAGAAAAATGAGGTTGTGGAAGAGACCCTCACCAAAATGGGTCTTCAAGATTGTGCTGAGAGTCATATTGGGAACTGGCATTTGAGAGGTATAAGTAATGGAGAAAAGAGGAGACTTAGCATTTGTATTGAAATATTAACACAGCCTCATGTGTTGTTGCTTGATGAACCCACTAGCGGTCTAGATAGTGCTTCATCTTTCTTTGTGATATGGGCATTGAGAAACATTGCTCAGGATGGAAGGATAGTCATTTGCTCTATTCACCAACCAAGTAGTGATGTCTTTAATCTCTTCAATGATCTCGTCCTCATAGCAGGAGGTGAAACTGTTTATTTTGGAGAGGCACTTAAGGCTGTAAAGTTCTTCTCTGATGCTGGATTTCCTTGTTCAACAAGGAAAAATCCTCCCGAACACTACATTCGATGTATTAGTTCAGACTTTGACAAAGTTATTACAGCTCTTATCCTATCTCAAAGAATGAATTATGGATCATCACCACCATCATCAAATACCCATATGACCTTGACAACAGATGAGATCAAAGGAAAACTAATTAACAAATACAAGGCCTCCCCATTTTCAATAGATGCAAAAAAAAGGATTCAAGAAATCTTGCTCACTGAAAACCTTTCCACGAAATCAAACATGGACAATAGTATTAGCTGGTGGAAGCAGCTGTGGACATTGACCCGCCGAACTTCGCTCAACATGTCTAGAGATATTGGGTACTATTGGTTAAGGGCTGTGTTTTACATTCTAATAGCAGTGAGTGCTGGTTCCTTCTTTTATCATATTGGGACAAGTAGTCAAGCAATTGTTTCAAGAGGAAAATGTGATGGTTTCATTTACGGCCTCATGATTTGCTTGTCCATTGGAGGCATACCCTTTGTTATTGAAGAATTAAAGGTGTTTAGGCGTGAAAGACTTGGTGGCCACTATGGGGAAGCTTTGTTTGTGCTCTCCAACTTCATTTCATCACTGCCTTTCGTGGTTCTCATGGCTTTCTCTGCTGGAACAATACTCTACTACATGGTGAAATTTCATACCGGGTTCTCTCATTACTTGTATTTTTGTATGAATCTCTTGTGCTGCATTGTGGTCACAGAAGGCACCGCCTTGATTGTTGCAGCTCTGGTTCCAAACCTCTTGATGGGCATAGGATGTGCTGCTGCTCTCACCGTATTCATGATGATGCCTTCACTTCTTTTTCGGAGGGTCTTTGAGCTTCCAAAAATCTTTTGGCAATATCCAATGTCATACCTTAGTTATGCTGGATGGGCAATAGAGGGTCAGTTGAAGAATGACATGATTGGGATTGAATTTGATTCCCCAGTCCAAGGAGAACCCAAGTTGAAGGGTGAGATCATCCTCCGAGAAATGTTTGGGATAAATCCCGAAAGTTCCAAGTGGTGGAATTTGGCTGCTCTTGCCTGCCTCTTAGTTGGTCTGAGACTCATCTTTTATGTGGCACTAAAATACAAGGAGAGATCATCATTTTTTTTCCAGAAACTCTATGCCAAGAGAACCACCTTCCAAAACCATGTCAAGGTAGCTTCATTCAGGAAGGATCAATTTATCTCCTCCTCGAAGAGACACCGGACTCTTACTCCGTTATCTTCTCAAGAGGGTCTCGGATCACCACTTCCAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

678

Amino Acids

75.74

Weight (kDa)

9.2

Isoelectric Point (pI)

53.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 36 - 187 3.1e-25 ABC transporter
AAA_29 PF13555 45 - 67 1e-05 P-loop containing region of AAA domain
ABC2_membrane_7 PF19055 216 - 270 1.6e-08 ABC-2 type transporter
ABC2_membrane PF01061 353 - 562 5.1e-29 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1493
AccB7I CCANNNNNTGG 1 cut(s) 1794
AciI CCGC 4 cut(s) 231, 561, 1075, 1497
AclWI GGATC 4 cut(s) 322, 880, 1959, 2026
AcoI YGGCCR 1 cut(s) 1315
AcsI RAATTY 3 cut(s) 1421, 1703, 1798
AfaI GTAC 2 cut(s) 32, 1112
AfiI CCNNNNNNNGG 7 cut(s) 201, 560, 1324, 1534, 1721, 1794, 1930
AflII CTTAAG 1 cut(s) 731
AflIII ACRYGT 1 cut(s) 1092
AhdI GACNNNNNGTC 1 cut(s) 1188
AluBI AGCT 8 cut(s) 350, 842, 1047, 1060, 1331, 1514, 1609, 1937
AluI AGCT 8 cut(s) 350, 842, 1047, 1060, 1331, 1514, 1609, 1937
Alw21I GWGCWC 1 cut(s) 1344
Alw26I GTCTC 5 cut(s) 401, 490, 1828, 1969, 2018
AlwI GGATC 4 cut(s) 322, 880, 1959, 2026
AoxI GGCC 4 cut(s) 147, 951, 1234, 1315
ApeKI GCWGC 9 cut(s) 68, 71, 208, 1057, 1473, 1511, 1550, 1553, 1805
ApoI RAATTY 3 cut(s) 1421, 1703, 1798
ArsI GACNNNNNNTTYG 2 cut(s) 489, 521
AspLEI GCGC 1 cut(s) 64
AspS9I GGNCC 2 cut(s) 148, 158
AsuC2I CCSGG 1 cut(s) 1432
AsuHPI GGTGA 8 cut(s) 406, 638, 716, 870, 1429, 1552, 1754, 2013
AvaII GGWCC 1 cut(s) 158
BalI TGGCCA 1 cut(s) 1317
BanI GGYRCC 1 cut(s) 1493
BauI CACGAG 1 cut(s) 381
BbsI GAAGAC 2 cut(s) 306, 419
Bbv12I GWGCWC 1 cut(s) 1344
BbvI GCAGC 9 cut(s) 80, 83, 195, 1069, 1460, 1523, 1537, 1540, 1792
BccI CCATC 5 cut(s) 614, 892, 1214, 1528, 1653
BceAI ACGGC 1 cut(s) 1249
BcnI CCSGG 1 cut(s) 1432
BcoDI GTCTC 5 cut(s) 401, 490, 1828, 1969, 2018
BfaI CTAG 4 cut(s) 12, 558, 566, 1098
BfrI CTTAAG 1 cut(s) 731
BisI GCNGC 9 cut(s) 69, 72, 209, 1058, 1474, 1512, 1551, 1554, 1806
BlsI GCNGC 9 cut(s) 70, 73, 210, 1059, 1475, 1513, 1552, 1555, 1807
BmcAI AGTACT 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 1432
Bme18I GGWCC 1 cut(s) 158
BmeRI GACNNNNNGTC 1 cut(s) 1188
BmgT120I GGNCC 2 cut(s) 148, 158
BmiI GGNNCC 4 cut(s) 159, 1162, 1495, 1521
BmrFI CCNGG 1 cut(s) 1432
BmrI ACTGGG 2 cut(s) 33, 1709
BmsI GCATC 4 cut(s) 181, 745, 961, 1566
BmuI ACTGGG 2 cut(s) 33, 1709
BpiI GAAGAC 2 cut(s) 306, 419
Bpu10I CCTNAGC 1 cut(s) 615
BpuEI CTTGAG 2 cut(s) 279, 1989
BpuMI CCSGG 1 cut(s) 1432
BsaI GGTCTC 2 cut(s) 401, 2018
BsaJI CCNNGG 2 cut(s) 195, 1720
BsaWI WCCGGW 1 cut(s) 1980
BsaXI ACNNNNNCTCC 4 cut(s) 938, 968, 1975, 2005
Bsc4I CCNNNNNNNGG 7 cut(s) 201, 560, 1324, 1534, 1721, 1794, 1930
Bse1I ACTGG 5 cut(s) 28, 124, 464, 1715, 2030
Bse3DI GCAATG 1 cut(s) 609
BseDI CCNNGG 2 cut(s) 195, 1720
BseGI GGATG 6 cut(s) 10, 241, 625, 1550, 1664, 1749
BseLI CCNNNNNNNGG 7 cut(s) 201, 560, 1324, 1534, 1721, 1794, 1930
BseMI GCAATG 1 cut(s) 609
BseMII CTCAG 3 cut(s) 432, 629, 1823
BseNI ACTGG 5 cut(s) 28, 124, 464, 1715, 2030
BseRI GAGGAG 3 cut(s) 508, 1954, 1957
BseXI GCAGC 9 cut(s) 80, 83, 195, 1069, 1460, 1523, 1537, 1540, 1792
BseYI CCCAGC 1 cut(s) 200
BshFI GGCC 4 cut(s) 149, 953, 1236, 1317
BshNI GGYRCC 1 cut(s) 1493
BsiHKAI GWGCWC 1 cut(s) 1344
BsiSI CCGG 2 cut(s) 1431, 1981
BslFI GGGAC 1 cut(s) 1195
BslI CCNNNNNNNGG 7 cut(s) 201, 560, 1324, 1534, 1721, 1794, 1930
BsmAI GTCTC 5 cut(s) 401, 490, 1828, 1969, 2018
BsmFI GGGAC 1 cut(s) 1195
BsnI GGCC 4 cut(s) 149, 953, 1236, 1317
Bso31I GGTCTC 2 cut(s) 401, 2018
Bsp1286I GDGCHC 1 cut(s) 1344
BspACI CCGC 4 cut(s) 231, 561, 1075, 1497
BspANI GGCC 4 cut(s) 149, 953, 1236, 1317
BspCNI CTCAG 3 cut(s) 433, 628, 1824
BspHI TCATGA 2 cut(s) 1239, 1569
BspLI GGNNCC 4 cut(s) 159, 1162, 1495, 1521
BspPI GGATC 4 cut(s) 322, 880, 1959, 2026
BspT107I GGYRCC 1 cut(s) 1493
BspTI CTTAAG 1 cut(s) 731
BspTNI GGTCTC 2 cut(s) 401, 2018
BsrDI GCAATG 1 cut(s) 609
BsrI ACTGG 5 cut(s) 28, 124, 464, 1715, 2030
BssECI CCNNGG 2 cut(s) 195, 1720
BssSI CACGAG 1 cut(s) 381
BssT1I CCWWGG 2 cut(s) 195, 1720
Bst2BI CACGAG 1 cut(s) 381
Bst4CI ACNGT 4 cut(s) 55, 325, 712, 1564
Bst6I CTCTTC 3 cut(s) 399, 680, 1967
BstAFI CTTAAG 1 cut(s) 731
BstAPI GCANNNNNTGC 1 cut(s) 1154
BstC8I GCNNGC 3 cut(s) 66, 213, 1816
BstDEI CTNAG 6 cut(s) 441, 500, 615, 1646, 1822, 1832
BstF5I GGATG 6 cut(s) 10, 241, 625, 1550, 1664, 1749
BstHHI GCGC 1 cut(s) 64
BstMAI GTCTC 5 cut(s) 401, 490, 1828, 1969, 2018
BstMWI GCNNNNNNNGC 7 cut(s) 68, 270, 734, 1154, 1391, 1661, 1811
BstNSI RCATGY 1 cut(s) 1096
BstSCI CCNGG 1 cut(s) 1430
BstV1I GCAGC 9 cut(s) 80, 83, 195, 1069, 1460, 1523, 1537, 1540, 1792
BstV2I GAAGAC 2 cut(s) 306, 419
BsuRI GGCC 4 cut(s) 149, 953, 1236, 1317
BtsCI GGATG 6 cut(s) 10, 241, 625, 1550, 1664, 1749
BtsI GCAGTG 2 cut(s) 1155, 1361
BtsIMutI CAGTG 6 cut(s) 273, 321, 1002, 1155, 1361, 2037
Cac8I GCNNGC 3 cut(s) 66, 213, 1816
CciI TCATGA 2 cut(s) 1239, 1569
CfoI GCGC 1 cut(s) 64
Cfr13I GGNCC 2 cut(s) 148, 158
Csp6I GTAC 2 cut(s) 31, 1111
CspCI CAANNNNNGTGG 2 cut(s) 169, 204
CviQI GTAC 2 cut(s) 31, 1111
DdeI CTNAG 6 cut(s) 441, 500, 615, 1646, 1822, 1832
DriI GACNNNNNGTC 1 cut(s) 1188
EaeI YGGCCR 1 cut(s) 1315
Eam1104I CTCTTC 3 cut(s) 399, 680, 1967
Eam1105I GACNNNNNGTC 1 cut(s) 1188
EarI CTCTTC 3 cut(s) 399, 680, 1967
Eco130I CCWWGG 2 cut(s) 195, 1720
Eco147I AGGCCT 1 cut(s) 953
Eco31I GGTCTC 2 cut(s) 401, 2018
Eco47I GGWCC 1 cut(s) 158
EcoO109I RGGNCCY 1 cut(s) 158
EcoT14I CCWWGG 2 cut(s) 195, 1720
ErhI CCWWGG 2 cut(s) 195, 1720
FaqI GGGAC 1 cut(s) 1195
FauI CCCGC 2 cut(s) 224, 1082
FauNDI CATATG 1 cut(s) 900
Fnu4HI GCNGC 9 cut(s) 69, 72, 209, 1058, 1474, 1512, 1551, 1554, 1806
FokI GGATG 6 cut(s) 17, 248, 632, 1557, 1671, 1736
Fsp4HI GCNGC 9 cut(s) 69, 72, 209, 1058, 1474, 1512, 1551, 1554, 1806
FspBI CTAG 4 cut(s) 12, 558, 566, 1098
GlaI GCGC 1 cut(s) 63
GluI GCNGC 9 cut(s) 69, 72, 209, 1058, 1474, 1512, 1551, 1554, 1806
GsaI CCCAGC 1 cut(s) 204
HaeIII GGCC 4 cut(s) 149, 953, 1236, 1317
HapII CCGG 2 cut(s) 1431, 1981
HhaI GCGC 1 cut(s) 64
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HindIII AAGCTT 1 cut(s) 1329
HinfI GANTC 7 cut(s) 292, 445, 985, 1462, 1709, 1836, 1984
HpaII CCGG 2 cut(s) 1431, 1981
HphI GGTGA 8 cut(s) 406, 638, 716, 870, 1429, 1552, 1754, 2013
Hpy166II GTNNAC 1 cut(s) 1065
Hpy188I TCNGA 7 cut(s) 141, 754, 820, 1596, 1757, 1833, 2018
Hpy8I GTNNAC 1 cut(s) 1065
HpyAV CCTTC 9 cut(s) 171, 375, 618, 1174, 1484, 1590, 1732, 1924, 1942
HpyCH4III ACNGT 4 cut(s) 55, 325, 712, 1564
HpyCH4V TGCA 6 cut(s) 8, 128, 215, 974, 1476, 1511
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 270, 734, 1154, 1391, 1661, 1811
HpyF3I CTNAG 6 cut(s) 441, 500, 615, 1646, 1822, 1832
HspAI GCGC 1 cut(s) 62
Lsp1109I GCAGC 9 cut(s) 80, 83, 195, 1069, 1460, 1523, 1537, 1540, 1792
LweI GCATC 4 cut(s) 181, 745, 961, 1566
MaeI CTAG 4 cut(s) 12, 558, 566, 1098
MaeIII GTNAC 3 cut(s) 115, 289, 1483
MboII GAAGA 9 cut(s) 311, 416, 419, 667, 739, 1292, 1693, 1984, 1992
MfeI CAATTG 1 cut(s) 1197
MhlI GDGCHC 1 cut(s) 1344
MlsI TGGCCA 1 cut(s) 1317
MluCI AATT 8 cut(s) 865, 936, 1197, 1283, 1421, 1703, 1798, 1955
MluNI TGGCCA 1 cut(s) 1317
MlyI GAGTC 4 cut(s) 286, 454, 1830, 1978
MmeI TCCRAC 1 cut(s) 1371
Mox20I TGGCCA 1 cut(s) 1317
MscI TGGCCA 1 cut(s) 1317
MseI TTAA 7 cut(s) 107, 521, 669, 732, 939, 1121, 1286
MslI CAYNNNNRTG 2 cut(s) 419, 1574
Msp20I TGGCCA 1 cut(s) 1317
MspA1I CMGCKG 1 cut(s) 1060
MspCI CTTAAG 1 cut(s) 731
MspI CCGG 2 cut(s) 1431, 1981
MspR9I CCNGG 1 cut(s) 1432
MunI CAATTG 1 cut(s) 1197
MwoI GCNNNNNNNGC 7 cut(s) 68, 270, 734, 1154, 1391, 1661, 1811
NciI CCSGG 1 cut(s) 1432
NdeI CATATG 1 cut(s) 900
NlaIV GGNNCC 4 cut(s) 159, 1162, 1495, 1521
NmuCI GTSAC 2 cut(s) 289, 1483
NspI RCATGY 1 cut(s) 1096
PagI TCATGA 2 cut(s) 1239, 1569
PceI AGGCCT 1 cut(s) 953
PciI ACATGT 1 cut(s) 1092
PfeI GAWTC 3 cut(s) 985, 1462, 1709
PflMI CCANNNNNTGG 1 cut(s) 1794
PkrI GCNGC 9 cut(s) 70, 73, 210, 1059, 1475, 1513, 1552, 1555, 1807
PleI GAGTC 4 cut(s) 286, 453, 1830, 1978
PpsI GAGTC 4 cut(s) 286, 453, 1830, 1978
PpuMI RGGWCCY 1 cut(s) 158
PscI ACATGT 1 cut(s) 1092
Psp5II RGGWCCY 1 cut(s) 158
PspFI CCCAGC 1 cut(s) 200
PspN4I GGNNCC 4 cut(s) 159, 1162, 1495, 1521
PspPI GGNCC 2 cut(s) 148, 158
PspPPI RGGWCCY 1 cut(s) 158
PvuII CAGCTG 1 cut(s) 1060
RsaI GTAC 2 cut(s) 32, 1112
RsaNI GTAC 2 cut(s) 31, 1111
RseI CAYNNNNRTG 2 cut(s) 419, 1574
SaqAI TTAA 7 cut(s) 107, 521, 669, 732, 939, 1121, 1286
SatI GCNGC 9 cut(s) 69, 72, 209, 1058, 1474, 1512, 1551, 1554, 1806
Sau96I GGNCC 2 cut(s) 148, 158
ScaI AGTACT 1 cut(s) 32
SchI GAGTC 4 cut(s) 286, 454, 1830, 1978
ScrFI CCNGG 1 cut(s) 1432
SduI GDGCHC 1 cut(s) 1344
SfaNI GCATC 4 cut(s) 181, 745, 961, 1566
SinI GGWCC 1 cut(s) 158
SmiMI CAYNNNNRTG 2 cut(s) 419, 1574
SmlI CTYRAG 3 cut(s) 294, 731, 2004
SmoI CTYRAG 3 cut(s) 294, 731, 2004
Sse9I AATT 8 cut(s) 865, 936, 1197, 1283, 1421, 1703, 1798, 1955
SseBI AGGCCT 1 cut(s) 953
SsiI CCGC 4 cut(s) 231, 561, 1075, 1497
SspI AATATT 1 cut(s) 519
SspMI CTAG 4 cut(s) 12, 558, 566, 1098
StuI AGGCCT 1 cut(s) 953
StyD4I CCNGG 1 cut(s) 1430
StyI CCWWGG 2 cut(s) 195, 1720
TaaI ACNGT 4 cut(s) 55, 325, 712, 1564
TaqI TCGA 2 cut(s) 805, 1970
TasI AATT 8 cut(s) 865, 936, 1197, 1283, 1421, 1703, 1798, 1955
TatI WGTACW 1 cut(s) 30
TfiI GAWTC 3 cut(s) 985, 1462, 1709
Tru1I TTAA 7 cut(s) 107, 521, 669, 732, 939, 1121, 1286
Tru9I TTAA 7 cut(s) 107, 521, 669, 732, 939, 1121, 1286
TscAI CASTG 6 cut(s) 280, 328, 1009, 1155, 1368, 2037
TseFI GTSAC 2 cut(s) 289, 1483
TseI GCWGC 9 cut(s) 68, 71, 208, 1057, 1473, 1511, 1550, 1553, 1805
Tsp45I GTSAC 2 cut(s) 289, 1483
TspGWI ACGGA 1 cut(s) 1983
TspRI CASTG 6 cut(s) 280, 328, 1009, 1155, 1368, 2037
Van91I CCANNNNNTGG 1 cut(s) 1794
Vha464I CTTAAG 1 cut(s) 731
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 3 cut(s) 1421, 1703, 1798
XbaI TCTAGA 2 cut(s) 565, 1097
XceI RCATGY 1 cut(s) 1096
XcmI CCANNNNNNNNNTGG 2 cut(s) 142, 1620
XspI CTAG 4 cut(s) 12, 558, 566, 1098
ZrmI AGTACT 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.