Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0011579

Physical Location & Seq

Genomic Coordinates Reverse (-)

28678190 .. 28685974

Gene Structure 7785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG285000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1809 bp

ATGTGCGGGGATGTTATACTCAATGGGAACAAAAGAAGCATAAACAGCACTGATATTTCTTATGTGACTCAAGAAGACATATTTCTGGGATCACTCACTGTAAGAGAAACTCTTACATATTCAGCTCATTTGAGGCTTCCTTCCAAAATGACAACACGAGAGAAAAATGAGGTTGTGGAAGAGACCCTCACCAAAATGGGTCTTCAAAATTGTGCTGAGAGTCATATTGGGAACTGGCATTTGAGAGGTATAAGTAATGGAGAAAAGAGGAGACTTAGCATTTGTATTGAAATATTAACACAGCCTCATGTGTTGTTGCTTGATGAACCCACTAGCGGTCTAGATAGTGCTTCATCTTTCTTTGTGATATGGGCATTGAGAAACATTGCTCAGGATGGAAGGATAGTCATTTGCTCTATTCACCAACCAAGTAGTGATGTCTTTAATCTCTTCAATGATCTCGTCCTCATAGCAGGAGGTGAAACTGTTTATTTTGGAGAGGCACTTAAGGCTGTAAAGTTCTTCTCTGATGCTGGATTTCCTTGTTCAACAAGGAAAAATCCTCCCGAACACTACATTCGATGTATTAGTTCAGACTTTGACAAAGTTATTACAGCTCTTATCCTATCTCAAAGAATGAATTATGGATCATCACCACCGTCATCAAATACCCATATGACCTTGACAACAGATGAGATCAAAGGAAAACTAATTAACAAATACAAGGCCTCCCCATTTTCAATAGATGCAAAAAAAAGGATTCAAGAAATCTTGCTCACTGAAAACCTTTCCATGAAATCAAACATAGACAATAGTATTAGCTGGTGGAAGCAGCTGTGGACATTGACCCGCCGAACTTCGCTCAACATGTCTAGAGATATTGGGTACTATTGGTTAAGGGCTGTGTTTTACATTCTCATAGCAGTGAGTGCTGGTTCCTTCTTTTATCATATTGGGACAAGTAGTCAAGCAATTGTTTCAAGAGGAAAATGTGATGGTTTCATTTACGGCCTCATGATTTGCTTGTCCATTGGAGGCATACCCTTTGTTATTGAAGAATTAAAGGTGTTTAGGCGTGAAAGACTTGGTGGCCACTATGGGGAAGCTTTGTTTGTGCTCTCCAACTTCATTTCATCACTGCCTTTCGTGGTTCTCATGGCTTTCTCTGCTGGAACAATACTCTACTACATGGTGAAATTTCATACCGGGTTCTCTCATTACTTGTATTTTTGTATGAATCTCTTGTGCTGCATTGTGGTCACAGAAGGCACCGCCTTGATTGTTGCAGCTCTTGTTCCAAACCTCTTGATGGGCATAGGATGTGCTGCTGCTCTCACCGTATTCATGATGATGCCTTCACTTCTTTTTCGGAGGGTCTTTGAGCTTCCAAAAATCTTTTGGCAATATCCAATGTCATACCTTAGTTATGCTGGATGGGCAATAGAGGGTCAGTTGAAGAATGACATGATTGGGATTGAATTTGATTCCCCAGTCCAAGGAGAACCCAAGTTGAAGGGTGAGATCATCCTCCGAGAAATGTTTGGGATAAATCCCGAAAGTTCCAAGTGGTGGAATTTGGCTGCTCTTGCCTGCCTCTTAGTTGGTCTGAGACTCATCTTTTATGTGGCACTAAAATACAAGGAGAGATCATCATTTTTTTTCCAGAAACTCTATGCCAAGAGAACCACCTTCCAAAACCATGTCAAGGTAGCTTCATTCAGGAAGGATCAATTTATCTCCTCCTCGAAGAGACACCGGACTCTTACTCCGTTATCTTCTCAAGAGGGTCTCGGATCACCACTTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

602

Amino Acids

67.91

Weight (kDa)

9.03

Isoelectric Point (pI)

55.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	10 - 112	6e-13	ABC transporter
ABC2_membrane_7	PF19055	141 - 195	1.6e-08	ABC-2 type transporter
ABC2_membrane	PF01061	278 - 487	4e-29	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011579)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24260
malus_domestica	MD00G1191900.v1.1 MD12G1076400.v1.1 MD12G1076700.v1.1 MD14G1074800.v1.1
prunus_persica	Prupe.7G056200_v2.0.a1 Prupe.7G056200_v2.0.a1 Prupe.7G056400_v2.0.a1 Prupe.7G056400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482931
rosa_laevigata	RLG00000023316
rosa_multiflora	Rmu_ssc0000175.1_g000016
rosa_roxburghii	Rroxscaffold_6G00398830
rosa_rugosa	Rorug03G0202100 Rorug03G0202100
rosa_samantha	Rh3AG251200 Rh3BG287700 Rh3CG285000 Rh3DG280700
rosa_wichuraiana	Rw3G022620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1268
AccB7I	CCANNNNNTGG	1 cut(s)	1569
AciI	CCGC	4 cut(s)	6, 336, 850, 1272
AclWI	GGATC	4 cut(s)	97, 655, 1734, 1801
AcoI	YGGCCR	1 cut(s)	1090
AcsI	RAATTY	3 cut(s)	1196, 1478, 1573
AfaI	GTAC	1 cut(s)	887
AfiI	CCNNNNNNNGG	6 cut(s)	335, 1099, 1309, 1496, 1569, 1705
AflII	CTTAAG	1 cut(s)	506
AflIII	ACRYGT	1 cut(s)	867
AhdI	GACNNNNNGTC	1 cut(s)	963
AluBI	AGCT	8 cut(s)	125, 617, 822, 835, 1106, 1289, 1384, 1712
AluI	AGCT	8 cut(s)	125, 617, 822, 835, 1106, 1289, 1384, 1712
Alw21I	GWGCWC	1 cut(s)	1119
Alw26I	GTCTC	5 cut(s)	176, 265, 1603, 1744, 1793
AlwI	GGATC	4 cut(s)	97, 655, 1734, 1801
AoxI	GGCC	3 cut(s)	726, 1009, 1090
ApeKI	GCWGC	6 cut(s)	832, 1248, 1286, 1325, 1328, 1580
ApoI	RAATTY	3 cut(s)	1196, 1478, 1573
ArsI	GACNNNNNNTTYG	2 cut(s)	264, 296
AsuC2I	CCSGG	1 cut(s)	1207
AsuHPI	GGTGA	8 cut(s)	181, 413, 491, 645, 1204, 1327, 1529, 1788
BalI	TGGCCA	1 cut(s)	1092
BanI	GGYRCC	1 cut(s)	1268
BauI	CACGAG	1 cut(s)	156
BbsI	GAAGAC	2 cut(s)	81, 194
Bbv12I	GWGCWC	1 cut(s)	1119
BbvI	GCAGC	6 cut(s)	844, 1235, 1298, 1312, 1315, 1567
BccI	CCATC	4 cut(s)	389, 989, 1303, 1428
BceAI	ACGGC	1 cut(s)	1024
BcnI	CCSGG	1 cut(s)	1207
BcoDI	GTCTC	5 cut(s)	176, 265, 1603, 1744, 1793
BfaI	CTAG	3 cut(s)	333, 341, 873
BfrI	CTTAAG	1 cut(s)	506
BisI	GCNGC	6 cut(s)	833, 1249, 1287, 1326, 1329, 1581
BlsI	GCNGC	6 cut(s)	834, 1250, 1288, 1327, 1330, 1582
Bme1390I	CCNGG	1 cut(s)	1207
BmeRI	GACNNNNNGTC	1 cut(s)	963
BmiI	GGNNCC	2 cut(s)	937, 1270
BmrFI	CCNGG	1 cut(s)	1207
BmrI	ACTGGG	1 cut(s)	1484
BmsI	GCATC	3 cut(s)	520, 736, 1341
BmuI	ACTGGG	1 cut(s)	1484
BpiI	GAAGAC	2 cut(s)	81, 194
Bpu10I	CCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	2 cut(s)	54, 1764
BpuMI	CCSGG	1 cut(s)	1207
BsaI	GGTCTC	2 cut(s)	176, 1793
BsaJI	CCNNGG	1 cut(s)	1495
BsaWI	WCCGGW	1 cut(s)	1755
BsaXI	ACNNNNNCTCC	4 cut(s)	713, 743, 1750, 1780
Bsc4I	CCNNNNNNNGG	6 cut(s)	335, 1099, 1309, 1496, 1569, 1705
Bse1I	ACTGG	2 cut(s)	239, 1490
Bse3DI	GCAATG	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	1495
BseGI	GGATG	5 cut(s)	16, 400, 1325, 1439, 1524
BseLI	CCNNNNNNNGG	6 cut(s)	335, 1099, 1309, 1496, 1569, 1705
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	3 cut(s)	207, 404, 1598
BseNI	ACTGG	2 cut(s)	239, 1490
BseRI	GAGGAG	3 cut(s)	283, 1729, 1732
BseXI	GCAGC	6 cut(s)	844, 1235, 1298, 1312, 1315, 1567
BshFI	GGCC	3 cut(s)	728, 1011, 1092
BshNI	GGYRCC	1 cut(s)	1268
BsiHKAI	GWGCWC	1 cut(s)	1119
BsiSI	CCGG	2 cut(s)	1206, 1756
BslFI	GGGAC	1 cut(s)	970
BslI	CCNNNNNNNGG	6 cut(s)	335, 1099, 1309, 1496, 1569, 1705
BsmAI	GTCTC	5 cut(s)	176, 265, 1603, 1744, 1793
BsmFI	GGGAC	1 cut(s)	970
BsnI	GGCC	3 cut(s)	728, 1011, 1092
Bso31I	GGTCTC	2 cut(s)	176, 1793
Bsp1286I	GDGCHC	1 cut(s)	1119
Bsp143I	GATC	8 cut(s)	89, 457, 647, 696, 1521, 1646, 1726, 1793
BspACI	CCGC	4 cut(s)	6, 336, 850, 1272
BspANI	GGCC	3 cut(s)	728, 1011, 1092
BspCNI	CTCAG	3 cut(s)	208, 403, 1599
BspHI	TCATGA	2 cut(s)	1014, 1344
BspLI	GGNNCC	2 cut(s)	937, 1270
BspPI	GGATC	4 cut(s)	97, 655, 1734, 1801
BspT107I	GGYRCC	1 cut(s)	1268
BspTI	CTTAAG	1 cut(s)	506
BspTNI	GGTCTC	2 cut(s)	176, 1793
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	239, 1490
BssECI	CCNNGG	1 cut(s)	1495
BssMI	GATC	8 cut(s)	89, 457, 647, 696, 1521, 1646, 1726, 1793
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	1495
Bst2BI	CACGAG	1 cut(s)	156
Bst4CI	ACNGT	4 cut(s)	100, 487, 660, 1339
Bst6I	CTCTTC	3 cut(s)	174, 455, 1742
BstAFI	CTTAAG	1 cut(s)	506
BstAPI	GCANNNNNTGC	1 cut(s)	929
BstC8I	GCNNGC	1 cut(s)	1591
BstDEI	CTNAG	6 cut(s)	216, 275, 390, 1421, 1597, 1607
BstF5I	GGATG	5 cut(s)	16, 400, 1325, 1439, 1524
BstKTI	GATC	8 cut(s)	92, 460, 650, 699, 1524, 1649, 1729, 1796
BstMAI	GTCTC	5 cut(s)	176, 265, 1603, 1744, 1793
BstMBI	GATC	8 cut(s)	89, 457, 647, 696, 1521, 1646, 1726, 1793
BstMWI	GCNNNNNNNGC	6 cut(s)	45, 509, 929, 1166, 1436, 1586
BstNSI	RCATGY	1 cut(s)	871
BstSCI	CCNGG	1 cut(s)	1205
BstV1I	GCAGC	6 cut(s)	844, 1235, 1298, 1312, 1315, 1567
BstV2I	GAAGAC	2 cut(s)	81, 194
BsuRI	GGCC	3 cut(s)	728, 1011, 1092
BtsCI	GGATG	5 cut(s)	16, 400, 1325, 1439, 1524
BtsI	GCAGTG	2 cut(s)	930, 1136
BtsIMutI	CAGTG	5 cut(s)	48, 96, 777, 930, 1136
Cac8I	GCNNGC	1 cut(s)	1591
CciI	TCATGA	2 cut(s)	1014, 1344
Csp6I	GTAC	1 cut(s)	886
CviAII	CATG	9 cut(s)	308, 793, 868, 1015, 1156, 1189, 1345, 1465, 1700
CviQI	GTAC	1 cut(s)	886
DdeI	CTNAG	6 cut(s)	216, 275, 390, 1421, 1597, 1607
DpnI	GATC	8 cut(s)	91, 459, 649, 698, 1523, 1648, 1728, 1795
DpnII	GATC	8 cut(s)	89, 457, 647, 696, 1521, 1646, 1726, 1793
DriI	GACNNNNNGTC	1 cut(s)	963
EaeI	YGGCCR	1 cut(s)	1090
Eam1104I	CTCTTC	3 cut(s)	174, 455, 1742
Eam1105I	GACNNNNNGTC	1 cut(s)	963
EarI	CTCTTC	3 cut(s)	174, 455, 1742
Eco130I	CCWWGG	1 cut(s)	1495
Eco147I	AGGCCT	1 cut(s)	728
Eco31I	GGTCTC	2 cut(s)	176, 1793
EcoT14I	CCWWGG	1 cut(s)	1495
ErhI	CCWWGG	1 cut(s)	1495
FaeI	CATG	9 cut(s)	311, 796, 871, 1018, 1159, 1192, 1348, 1468, 1703
FaqI	GGGAC	1 cut(s)	970
FatI	CATG	9 cut(s)	307, 792, 867, 1014, 1155, 1188, 1344, 1464, 1699
FauI	CCCGC	1 cut(s)	857
FauNDI	CATATG	1 cut(s)	675
Fnu4HI	GCNGC	6 cut(s)	833, 1249, 1287, 1326, 1329, 1581
FokI	GGATG	5 cut(s)	23, 407, 1332, 1446, 1511
Fsp4HI	GCNGC	6 cut(s)	833, 1249, 1287, 1326, 1329, 1581
FspBI	CTAG	3 cut(s)	333, 341, 873
GluI	GCNGC	6 cut(s)	833, 1249, 1287, 1326, 1329, 1581
HaeIII	GGCC	3 cut(s)	728, 1011, 1092
HapII	CCGG	2 cut(s)	1206, 1756
Hin1II	CATG	9 cut(s)	311, 796, 871, 1018, 1159, 1192, 1348, 1468, 1703
HindIII	AAGCTT	1 cut(s)	1104
HinfI	GANTC	7 cut(s)	67, 220, 760, 1237, 1484, 1611, 1759
HpaII	CCGG	2 cut(s)	1206, 1756
HphI	GGTGA	8 cut(s)	181, 413, 491, 645, 1204, 1327, 1529, 1788
Hpy166II	GTNNAC	1 cut(s)	840
Hpy188I	TCNGA	6 cut(s)	529, 595, 1371, 1532, 1608, 1793
Hpy8I	GTNNAC	1 cut(s)	840
HpyAV	CCTTC	8 cut(s)	150, 393, 949, 1259, 1365, 1507, 1699, 1717
HpyCH4III	ACNGT	4 cut(s)	100, 487, 660, 1339
HpyCH4V	TGCA	3 cut(s)	749, 1251, 1286
HpyF10VI	GCNNNNNNNGC	6 cut(s)	45, 509, 929, 1166, 1436, 1586
HpyF3I	CTNAG	6 cut(s)	216, 275, 390, 1421, 1597, 1607
Hsp92II	CATG	9 cut(s)	311, 796, 871, 1018, 1159, 1192, 1348, 1468, 1703
Kzo9I	GATC	8 cut(s)	89, 457, 647, 696, 1521, 1646, 1726, 1793
Lsp1109I	GCAGC	6 cut(s)	844, 1235, 1298, 1312, 1315, 1567
LweI	GCATC	3 cut(s)	520, 736, 1341
MaeI	CTAG	3 cut(s)	333, 341, 873
MaeIII	GTNAC	2 cut(s)	64, 1258
MalI	GATC	8 cut(s)	91, 459, 649, 698, 1523, 1648, 1728, 1795
MboI	GATC	8 cut(s)	89, 457, 647, 696, 1521, 1646, 1726, 1793
MboII	GAAGA	9 cut(s)	86, 191, 194, 442, 514, 1067, 1468, 1759, 1767
MfeI	CAATTG	1 cut(s)	972
MhlI	GDGCHC	1 cut(s)	1119
MlsI	TGGCCA	1 cut(s)	1092
MluCI	AATT	9 cut(s)	208, 640, 711, 972, 1058, 1196, 1478, 1573, 1730
MluNI	TGGCCA	1 cut(s)	1092
MlyI	GAGTC	4 cut(s)	61, 229, 1605, 1753
MmeI	TCCRAC	1 cut(s)	1146
Mox20I	TGGCCA	1 cut(s)	1092
MscI	TGGCCA	1 cut(s)	1092
MseI	TTAA	6 cut(s)	296, 444, 507, 714, 896, 1061
MslI	CAYNNNNRTG	3 cut(s)	194, 923, 1349
Msp20I	TGGCCA	1 cut(s)	1092
MspA1I	CMGCKG	1 cut(s)	835
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	2 cut(s)	1206, 1756
MspR9I	CCNGG	1 cut(s)	1207
MunI	CAATTG	1 cut(s)	972
MwoI	GCNNNNNNNGC	6 cut(s)	45, 509, 929, 1166, 1436, 1586
NciI	CCSGG	1 cut(s)	1207
NdeI	CATATG	1 cut(s)	675
NdeII	GATC	8 cut(s)	89, 457, 647, 696, 1521, 1646, 1726, 1793
NlaIII	CATG	9 cut(s)	311, 796, 871, 1018, 1159, 1192, 1348, 1468, 1703
NlaIV	GGNNCC	2 cut(s)	937, 1270
NmuCI	GTSAC	2 cut(s)	64, 1258
NspI	RCATGY	1 cut(s)	871
PagI	TCATGA	2 cut(s)	1014, 1344
PceI	AGGCCT	1 cut(s)	728
PciI	ACATGT	1 cut(s)	867
PfeI	GAWTC	3 cut(s)	760, 1237, 1484
PflMI	CCANNNNNTGG	1 cut(s)	1569
PkrI	GCNGC	6 cut(s)	834, 1250, 1288, 1327, 1330, 1582
PleI	GAGTC	4 cut(s)	61, 228, 1605, 1753
PpsI	GAGTC	4 cut(s)	61, 228, 1605, 1753
PscI	ACATGT	1 cut(s)	867
PspN4I	GGNNCC	2 cut(s)	937, 1270
PvuII	CAGCTG	1 cut(s)	835
RsaI	GTAC	1 cut(s)	887
RsaNI	GTAC	1 cut(s)	886
RseI	CAYNNNNRTG	3 cut(s)	194, 923, 1349
SaqAI	TTAA	6 cut(s)	296, 444, 507, 714, 896, 1061
SatI	GCNGC	6 cut(s)	833, 1249, 1287, 1326, 1329, 1581
Sau3AI	GATC	8 cut(s)	89, 457, 647, 696, 1521, 1646, 1726, 1793
SchI	GAGTC	4 cut(s)	61, 229, 1605, 1753
ScrFI	CCNGG	1 cut(s)	1207
SduI	GDGCHC	1 cut(s)	1119
SfaNI	GCATC	3 cut(s)	520, 736, 1341
SmiMI	CAYNNNNRTG	3 cut(s)	194, 923, 1349
SmlI	CTYRAG	3 cut(s)	69, 506, 1779
SmoI	CTYRAG	3 cut(s)	69, 506, 1779
Sse9I	AATT	9 cut(s)	208, 640, 711, 972, 1058, 1196, 1478, 1573, 1730
SseBI	AGGCCT	1 cut(s)	728
SsiI	CCGC	4 cut(s)	6, 336, 850, 1272
SspI	AATATT	1 cut(s)	294
SspMI	CTAG	3 cut(s)	333, 341, 873
StuI	AGGCCT	1 cut(s)	728
StyD4I	CCNGG	1 cut(s)	1205
StyI	CCWWGG	1 cut(s)	1495
TaaI	ACNGT	4 cut(s)	100, 487, 660, 1339
TaqI	TCGA	2 cut(s)	580, 1745
TasI	AATT	9 cut(s)	208, 640, 711, 972, 1058, 1196, 1478, 1573, 1730
TfiI	GAWTC	3 cut(s)	760, 1237, 1484
Tru1I	TTAA	6 cut(s)	296, 444, 507, 714, 896, 1061
Tru9I	TTAA	6 cut(s)	296, 444, 507, 714, 896, 1061
TscAI	CASTG	5 cut(s)	55, 103, 784, 930, 1143
TseFI	GTSAC	2 cut(s)	64, 1258
TseI	GCWGC	6 cut(s)	832, 1248, 1286, 1325, 1328, 1580
Tsp45I	GTSAC	2 cut(s)	64, 1258
TspGWI	ACGGA	1 cut(s)	1758
TspRI	CASTG	5 cut(s)	55, 103, 784, 930, 1143
Van91I	CCANNNNNTGG	1 cut(s)	1569
Vha464I	CTTAAG	1 cut(s)	506
XapI	RAATTY	3 cut(s)	1196, 1478, 1573
XbaI	TCTAGA	2 cut(s)	340, 872
XceI	RCATGY	1 cut(s)	871
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1395
XspI	CTAG	3 cut(s)	333, 341, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.