Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0011579

Physical Location & Seq

Genomic Coordinates Forward (+)

9333009 .. 9335765

Gene Structure 2757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1076700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGGAACAAAAGAAGCAGAAACTGCACAGATATTGGATCACTCACAGTCAGAAACTCTAACATATTCAGCTCATATAAGGCTCCCTTGTAAAATGACCAAAGAGGAGAAGAATGAGGTGGTAGAAAACACTATCACAAAAATGGGGCTTCAAGATATCGCTGGAAGTAACATCGGAAACTGGCATTTGAGAGGCATAAGTAATGGAGAAAAGAGGAGACTCAGCATATGTATTGAAGTACTTACACAACCTCATGTGTTCCTGCTTGATGAACCCACCAGCGGCCTCGACAGTGCTTCCTCTTTCTTTGTGATATGGACACTGAGAAACATTGCTGGAGGTGAAACTGTTTATTTTGGAGAAGCAAAGATTGCTGTAAAGTTCTTCGCTGATGCCGGATTTCCTTGCCCAACACGAAAAAATCCTCCAGACCACTTCCTTCGATGCATTAGTTCAGACTTTGACAAAGTTCTAGCAGCTCTTTTGCTATCTCAAAGGATTAATTATGCATCTACATATTCTTTCATTTCCCAAAACAACCTGACAACAGATGAGATCAAAGGAAGGCTAATCAATGCGTACCAGTTGTCCGCATTATCAACAGATGCAAGAAAAAGGATCCGAGAAATCTTGCTCACTGAAAAACCGGCGGGAAAATCAAACAAGGGAAGTAGTGCCATTTGGGGGAAGCTGCTATGTACATTGATCAGTCGATCTTCAATAAACATGTCTAGAGATATTGGGTACTATTGGTTAAGAAGTGTGTTCTACATACTAATTGCAGTGAGTGCTGGCTCTTTCTTTTTCCACATTGGAACGAACAATCAAGCAATGATTGCAAGAGAAAAGTGTGATGGTTTCATTTATGGCTTAATGATCTGCTTGTCTATTGGAGGCATACCCTTCGTTATTGAAGAACTAAAGGTATTTAGGCGGGAAAGACTTGGCGGGCATTATGGGGAAGCATTGTTTGTGCTCTCCAACTTCCTCTGCTCACTCCCTTTCGTGGTTGGCATGGCTTTCTCTTCTGGAACAATACTATACCACATGGTCAAATTTCACTCAAGATTCTCTCATTACTTGTATTTTTGCATCAATATCTTCTGCTACATTGCTGTCACAGAAGGAGCCGCTTTAATTGCGGCAGCACTGGTTCCCAACCTCTTGATGGCCGTAGGAGCTGCAGCCGGCATAACAGTATTCATGATGATGCCATCTCTTCCTTTCCAAAGGATGGTTGACCTACCAAAAATCTTTTGGCGATATCCCATGTCATACCTCAGCTATGCAGCATGGTCAATACAGGTACGAAGTAATAAACATTTCCGAGATGCTATGGTCAGTAGTGCACATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

453

Amino Acids

50.59

Weight (kDa)

8.96

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	25 - 94	2.5e-08	ABC transporter
ABC2_membrane	PF01061	232 - 435	9.1e-24	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011579)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24260
malus_domestica	MD00G1191900.v1.1 MD12G1076400.v1.1 MD12G1076700.v1.1 MD14G1074800.v1.1
prunus_persica	Prupe.7G056200_v2.0.a1 Prupe.7G056200_v2.0.a1 Prupe.7G056400_v2.0.a1 Prupe.7G056400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482931
rosa_laevigata	RLG00000023316
rosa_multiflora	Rmu_ssc0000175.1_g000016
rosa_roxburghii	Rroxscaffold_6G00398830
rosa_rugosa	Rorug03G0202100 Rorug03G0202100
rosa_samantha	Rh3AG251200 Rh3BG287700 Rh3CG285000 Rh3DG280700
rosa_wichuraiana	Rw3G022620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1234
AciI	CCGC	7 cut(s)	282, 591, 650, 934, 948, 1131, 1142
AclWI	GGATC	3 cut(s)	45, 613, 626
AcoI	YGGCCR	1 cut(s)	1170
AcsI	RAATTY	1 cut(s)	1055
AfaI	GTAC	5 cut(s)	240, 581, 700, 746, 1308
AfiI	CCNNNNNNNGG	5 cut(s)	281, 684, 1006, 1168, 1234
AflIII	ACRYGT	1 cut(s)	726
AgsI	TTSAA	4 cut(s)	152, 236, 720, 914
AluBI	AGCT	5 cut(s)	71, 479, 691, 1181, 1284
AluI	AGCT	5 cut(s)	71, 479, 691, 1181, 1284
Alw21I	GWGCWC	2 cut(s)	978, 1351
Alw26I	GTCTC	1 cut(s)	211
Alw44I	GTGCAC	1 cut(s)	1347
AlwI	GGATC	3 cut(s)	45, 613, 626
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	2 cut(s)	283, 1170
ApaLI	GTGCAC	1 cut(s)	1347
ApeKI	GCWGC	6 cut(s)	476, 691, 1145, 1181, 1184, 1289
ApoI	RAATTY	1 cut(s)	1055
AseI	ATTAAT	1 cut(s)	501
AsuHPI	GGTGA	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	1351
BamHI	GGATCC	1 cut(s)	618
Bbv12I	GWGCWC	2 cut(s)	978, 1351
BbvCI	CCTCAGC	1 cut(s)	1280
BbvI	GCAGC	6 cut(s)	488, 678, 1157, 1168, 1196, 1301
BccI	CCATC	4 cut(s)	848, 1162, 1222, 1228
BceAI	ACGGC	1 cut(s)	1157
BcgI	CGANNNNNNTGC	2 cut(s)	886, 920
BclI	TGATCA	1 cut(s)	705
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	2 cut(s)	473, 732
BfmI	CTRYAG	1 cut(s)	1182
BisI	GCNGC	9 cut(s)	283, 477, 692, 1131, 1143, 1146, 1182, 1185, 1290
BlsI	GCNGC	9 cut(s)	284, 478, 693, 1132, 1144, 1147, 1183, 1186, 1291
BmcAI	AGTACT	1 cut(s)	240
BmiI	GGNNCC	4 cut(s)	83, 620, 1129, 1155
BmsI	GCATC	7 cut(s)	382, 434, 518, 595, 1101, 1200, 1321
BpmI	CTGGAG	2 cut(s)	357, 411
Bpu10I	CCTNAGC	1 cut(s)	1280
BpuEI	CTTGAG	1 cut(s)	1048
Bsc4I	CCNNNNNNNGG	5 cut(s)	281, 684, 1006, 1168, 1234
Bse118I	RCCGGY	2 cut(s)	646, 1187
Bse1I	ACTGG	3 cut(s)	185, 583, 1155
Bse3DI	GCAATG	3 cut(s)	330, 837, 1110
BseGI	GGATG	1 cut(s)	1239
BseLI	CCNNNNNNNGG	5 cut(s)	281, 684, 1006, 1168, 1234
BseMI	GCAATG	3 cut(s)	330, 837, 1110
BseMII	CTCAG	3 cut(s)	235, 314, 1294
BseNI	ACTGG	3 cut(s)	185, 583, 1155
BseRI	GAGGAG	2 cut(s)	119, 229
BseSI	GKGCMC	1 cut(s)	1351
BseXI	GCAGC	6 cut(s)	488, 678, 1157, 1168, 1196, 1301
BsgI	GTGCAG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	285, 1172
BsiHKAI	GWGCWC	2 cut(s)	978, 1351
BsiSI	CCGG	3 cut(s)	396, 647, 1188
BslI	CCNNNNNNNGG	5 cut(s)	281, 684, 1006, 1168, 1234
BsmAI	GTCTC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	285, 1172
Bsp1286I	GDGCHC	2 cut(s)	978, 1351
Bsp1407I	TGTACA	1 cut(s)	698
Bsp143I	GATC	6 cut(s)	37, 555, 618, 705, 713, 876
BspACI	CCGC	7 cut(s)	282, 591, 650, 934, 948, 1131, 1142
BspANI	GGCC	2 cut(s)	285, 1172
BspCNI	CTCAG	3 cut(s)	234, 315, 1293
BspHI	TCATGA	1 cut(s)	1203
BspLI	GGNNCC	4 cut(s)	83, 620, 1129, 1155
BspMAI	CTGCAG	1 cut(s)	1186
BspPI	GGATC	3 cut(s)	45, 613, 626
BsrDI	GCAATG	3 cut(s)	330, 837, 1110
BsrFI	RCCGGY	2 cut(s)	646, 1187
BsrGI	TGTACA	1 cut(s)	698
BsrI	ACTGG	3 cut(s)	185, 583, 1155
BssAI	RCCGGY	2 cut(s)	646, 1187
BssMI	GATC	6 cut(s)	37, 555, 618, 705, 713, 876
Bst4CI	ACNGT	4 cut(s)	48, 293, 349, 1198
Bst6I	CTCTTC	2 cut(s)	1030, 1224
BstAPI	GCANNNNNTGC	4 cut(s)	23, 371, 788, 836
BstAUI	TGTACA	1 cut(s)	698
BstC8I	GCNNGC	3 cut(s)	793, 950, 1189
BstDEI	CTNAG	3 cut(s)	221, 323, 1280
BstF5I	GGATG	1 cut(s)	1239
BstKTI	GATC	6 cut(s)	40, 558, 621, 708, 716, 879
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	6 cut(s)	37, 555, 618, 705, 713, 876
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 371, 788, 836, 1139, 1178
BstNSI	RCATGY	1 cut(s)	730
BstSFI	CTRYAG	1 cut(s)	1182
BstSLI	GKGCMC	1 cut(s)	1351
BstV1I	GCAGC	6 cut(s)	488, 678, 1157, 1168, 1196, 1301
BstX2I	RGATCY	1 cut(s)	618
BstYI	RGATCY	1 cut(s)	618
BsuRI	GGCC	2 cut(s)	285, 1172
BtsCI	GGATG	1 cut(s)	1239
BtsI	GCAGTG	1 cut(s)	789
BtsIMutI	CAGTG	5 cut(s)	298, 320, 636, 789, 1148
Cac8I	GCNNGC	3 cut(s)	793, 950, 1189
CaiI	CAGNNNCTG	1 cut(s)	23
CciI	TCATGA	1 cut(s)	1203
Cfr10I	RCCGGY	2 cut(s)	646, 1187
Csp6I	GTAC	5 cut(s)	239, 580, 699, 745, 1307
CviAII	CATG	8 cut(s)	254, 727, 1015, 1048, 1204, 1270, 1293, 1352
CviQI	GTAC	5 cut(s)	239, 580, 699, 745, 1307
DdeI	CTNAG	3 cut(s)	221, 323, 1280
DpnI	GATC	6 cut(s)	39, 557, 620, 707, 715, 878
DpnII	GATC	6 cut(s)	37, 555, 618, 705, 713, 876
EaeI	YGGCCR	1 cut(s)	1170
Eam1104I	CTCTTC	2 cut(s)	1030, 1224
EarI	CTCTTC	2 cut(s)	1030, 1224
Eco32I	GATATC	2 cut(s)	157, 1265
EcoRV	GATATC	2 cut(s)	157, 1265
EcoT22I	ATGCAT	2 cut(s)	449, 511
FaeI	CATG	8 cut(s)	257, 730, 1018, 1051, 1207, 1273, 1296, 1355
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FatI	CATG	8 cut(s)	253, 726, 1014, 1047, 1203, 1269, 1292, 1351
FauI	CCCGC	3 cut(s)	643, 927, 941
FauNDI	CATATG	1 cut(s)	227
FbaI	TGATCA	1 cut(s)	705
Fnu4HI	GCNGC	9 cut(s)	283, 477, 692, 1131, 1143, 1146, 1182, 1185, 1290
FokI	GGATG	1 cut(s)	1246
Fsp4HI	GCNGC	9 cut(s)	283, 477, 692, 1131, 1143, 1146, 1182, 1185, 1290
FspBI	CTAG	2 cut(s)	473, 732
GluI	GCNGC	9 cut(s)	283, 477, 692, 1131, 1143, 1146, 1182, 1185, 1290
GsuI	CTGGAG	2 cut(s)	357, 411
HaeIII	GGCC	2 cut(s)	285, 1172
HapII	CCGG	3 cut(s)	396, 647, 1188
Hin1II	CATG	8 cut(s)	257, 730, 1018, 1051, 1207, 1273, 1296, 1355
HincII	GTYRAC	1 cut(s)	1240
HindII	GTYRAC	1 cut(s)	1240
HinfI	GANTC	2 cut(s)	219, 1068
HpaII	CCGG	3 cut(s)	396, 647, 1188
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	2 cut(s)	1240, 1349
Hpy188I	TCNGA	5 cut(s)	52, 176, 457, 623, 1328
Hpy188III	TCNNGA	7 cut(s)	152, 428, 732, 1029, 1065, 1165, 1204
Hpy8I	GTNNAC	2 cut(s)	1240, 1349
HpyAV	CCTTC	4 cut(s)	449, 558, 913, 1118
HpyCH4III	ACNGT	4 cut(s)	48, 293, 349, 1198
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 371, 788, 836, 1139, 1178
HpyF3I	CTNAG	3 cut(s)	221, 323, 1280
Hsp92II	CATG	8 cut(s)	257, 730, 1018, 1051, 1207, 1273, 1296, 1355
KroI	GCCGGC	1 cut(s)	1187
KroNI	GCCGGC	1 cut(s)	1189
Ksp22I	TGATCA	1 cut(s)	705
Kzo9I	GATC	6 cut(s)	37, 555, 618, 705, 713, 876
LmnI	GCTCC	3 cut(s)	87, 1127, 1178
Lsp1109I	GCAGC	6 cut(s)	488, 678, 1157, 1168, 1196, 1301
LweI	GCATC	7 cut(s)	382, 434, 518, 595, 1101, 1200, 1321
MaeI	CTAG	2 cut(s)	473, 732
MaeIII	GTNAC	2 cut(s)	167, 1117
MalI	GATC	6 cut(s)	39, 557, 620, 707, 715, 878
MboI	GATC	6 cut(s)	37, 555, 618, 705, 713, 876
MboII	GAAGA	7 cut(s)	121, 376, 708, 926, 1017, 1093, 1211
MflI	RGATCY	1 cut(s)	618
MhlI	GDGCHC	2 cut(s)	978, 1351
MluCI	AATT	4 cut(s)	502, 777, 1055, 1137
MlyI	GAGTC	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	1005
Mph1103I	ATGCAT	2 cut(s)	449, 511
MroNI	GCCGGC	1 cut(s)	1187
MseI	TTAA	4 cut(s)	501, 755, 872, 1136
MslI	CAYNNNNRTG	3 cut(s)	140, 1208, 1354
MspA1I	CMGCKG	1 cut(s)	282
MspI	CCGG	3 cut(s)	396, 647, 1188
MwoI	GCNNNNNNNGC	6 cut(s)	23, 371, 788, 836, 1139, 1178
NaeI	GCCGGC	1 cut(s)	1189
NdeI	CATATG	1 cut(s)	227
NdeII	GATC	6 cut(s)	37, 555, 618, 705, 713, 876
NgoMIV	GCCGGC	1 cut(s)	1187
NlaIII	CATG	8 cut(s)	257, 730, 1018, 1051, 1207, 1273, 1296, 1355
NlaIV	GGNNCC	4 cut(s)	83, 620, 1129, 1155
NmuCI	GTSAC	1 cut(s)	1117
NsiI	ATGCAT	2 cut(s)	449, 511
NspI	RCATGY	1 cut(s)	730
PagI	TCATGA	1 cut(s)	1203
PciI	ACATGT	1 cut(s)	726
PdiI	GCCGGC	1 cut(s)	1189
PfeI	GAWTC	1 cut(s)	1068
PflMI	CCANNNNNTGG	1 cut(s)	1234
PkrI	GCNGC	9 cut(s)	284, 478, 693, 1132, 1144, 1147, 1183, 1186, 1291
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
PscI	ACATGT	1 cut(s)	726
PshBI	ATTAAT	1 cut(s)	501
PspN4I	GGNNCC	4 cut(s)	83, 620, 1129, 1155
PstI	CTGCAG	1 cut(s)	1186
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	618
RsaI	GTAC	5 cut(s)	240, 581, 700, 746, 1308
RsaNI	GTAC	5 cut(s)	239, 580, 699, 745, 1307
RseI	CAYNNNNRTG	3 cut(s)	140, 1208, 1354
SaqAI	TTAA	4 cut(s)	501, 755, 872, 1136
SatI	GCNGC	9 cut(s)	283, 477, 692, 1131, 1143, 1146, 1182, 1185, 1290
Sau3AI	GATC	6 cut(s)	37, 555, 618, 705, 713, 876
ScaI	AGTACT	1 cut(s)	240
SchI	GAGTC	1 cut(s)	213
SduI	GDGCHC	2 cut(s)	978, 1351
SfaNI	GCATC	7 cut(s)	382, 434, 518, 595, 1101, 1200, 1321
SfcI	CTRYAG	1 cut(s)	1182
SmiMI	CAYNNNNRTG	3 cut(s)	140, 1208, 1354
SmlI	CTYRAG	1 cut(s)	1063
SmoI	CTYRAG	1 cut(s)	1063
Sse9I	AATT	4 cut(s)	502, 777, 1055, 1137
SsiI	CCGC	7 cut(s)	282, 591, 650, 934, 948, 1131, 1142
SspMI	CTAG	2 cut(s)	473, 732
TaaI	ACNGT	4 cut(s)	48, 293, 349, 1198
TaqI	TCGA	3 cut(s)	288, 442, 712
TasI	AATT	4 cut(s)	502, 777, 1055, 1137
TatI	WGTACW	2 cut(s)	238, 698
TauI	GCSGC	3 cut(s)	285, 1133, 1145
TfiI	GAWTC	1 cut(s)	1068
Tru1I	TTAA	4 cut(s)	501, 755, 872, 1136
Tru9I	TTAA	4 cut(s)	501, 755, 872, 1136
TscAI	CASTG	5 cut(s)	298, 327, 643, 789, 1155
TseFI	GTSAC	1 cut(s)	1117
TseI	GCWGC	6 cut(s)	476, 691, 1145, 1181, 1184, 1289
Tsp45I	GTSAC	1 cut(s)	1117
TspDTI	ATGAA	4 cut(s)	285, 514, 850, 1192
TspRI	CASTG	5 cut(s)	298, 327, 643, 789, 1155
Van91I	CCANNNNNTGG	1 cut(s)	1234
VneI	GTGCAC	1 cut(s)	1347
VspI	ATTAAT	1 cut(s)	501
XapI	RAATTY	1 cut(s)	1055
XbaI	TCTAGA	1 cut(s)	731
XceI	RCATGY	1 cut(s)	730
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1165, 1254
XspI	CTAG	2 cut(s)	473, 732
ZrmI	AGTACT	1 cut(s)	240
Zsp2I	ATGCAT	2 cut(s)	449, 511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.