Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0011579

Physical Location & Seq

Genomic Coordinates Reverse (-)

28494778 .. 28503146

Gene Structure 8369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG280700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1695 bp

ATGGATGCAACTGGATCATCAGCTGGGAAGTACTTGGTTTGGCAAGACTTGACGGTGGTTGCGCCAGCAGCAGCAACAAGTAGTGTAAGCAGATCAAAGTTGCTGTTAAATGGGGTTACTGGTTATGCACAACCCAATCGGATTATGGCCCTCATGGGTCCTTCTGGCTCTGGAAAATCCACCTTACTTGATGCCTTGGCTGGGAGGCTGCCTGCAAATGTTAGAATGTGCGGGGATGTTATACTCAATGGGAACAAAAGAAGCATAAACAGCACTGATATTTCTTATGTGACTCAAGAAGACATATTTCTGGGATCACTCACTGTAAGAGAAACTCTTACATATTCAGCTCATTTGAGGCTTCCTTCCAAAATGACGACACGAGAGAAAAATGAGGTTGTGGAAGAGACCCTCACCAAAATGGGTCTTCAAGCTTGTGCTGAGAGTCATATTGGGAACTGGCATTTGAGAGGTATAAGTAATGGAGAAAAGAGGAGACTTAGCATTTGTATTGAAATATTAACACAGCCTCATGTGTTGTTGCTTGATGAACCCACTAGCGGTCTAGATAGTGCTTCATCTTTCTTTGTGATATGGGCATTGAGAAACATTGCTCAGGATGGAAGGATAGTCATTTGCTCTATTCACCAACCAAGTAGTGATGTCTTTAATCTCTTCAATGATCTCGTCCTCATAGCAGGAGGTGAAACTGTTTATTTTGGAGAGGCACTTAAGGCTGTAAAGTTCTTCTCTGATGCTGGATTTCCTTGTTCAACAAGGAAAAATCCTCCCGAACACTACATTCGATGTATTAGTTCAGACTTTGACAAAGTTATTACAGCTCTTATCCTATCTCAAAGAATGAATTATGGATCATCACCACCGTCATCAAATACCCATATGACCTTGACAACAGATGAGATCAAAGGAAAACTAATTAACAAATACAAGGCCTCCCCATTTTCAATAGATGCAAAAAAAAGGATTCAAGAAATCTTGCTCACTGAAAACCTTTCCATGAAATCAAACATAGACAATAGTATTAGCTGGTGGAAGCAGCTGTGGACATTGACCCGCCGAACTTCGCTCAACATGTCTAGAGATATTGGGTACTATTGGTTAAGGGCTGTGTTTTACATTCTCATAGCAGTGAGTGCTGGTTCCTTCTTTTATCATATTGGGACAAGTAGTCAAGCAATTGTTTCAAGAGGAAAATGTGATGGTTTCATTTACGGCCTCATGATTTGCTTGTCCATTGGAGGCATACCCTTTGTTATTGAAGAATTAAAGGTGTTTAGGCGTGAAAGACTTGGTGGCCACTATGGGGAAGCTTTGTTTGTGCTCTCCAACTTCATTTCATCACTGCCTTTCGTGGTTCTCATGGCTTTCTCTGCTGGAACAATACTCTATTACATGGTGAAATTTCATACCGGGTTCTCTCATTACTTGTATTTTTGTATGAATCTCTTGTGCTGCATTGTGGTCACAGAAGGCACCGCCTTGATTGTTGCAGCTCTTGTTCCAAACCTCTTGATGGGCATAGGATGTGCTGCTGCTCTCACCGTATTCATGATGATGCCTTCACTTCTTTTTCGGAGGGTCTTTGAGCTTCCAAAAATCTTTTGGCAATATCCAATGTCATACCTTAGTTATGCTGGATGGGCAATAGAGGTAAAAAAACTAAATCTTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

564

Amino Acids

62.56

Weight (kDa)

8.98

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	36 - 187	6.9e-25	ABC transporter
AAA_29	PF13555	45 - 67	8.3e-06	P-loop containing region of AAA domain
ABC2_membrane_7	PF19055	216 - 270	7.6e-10	ABC-2 type transporter
ABC2_membrane	PF01061	353 - 557	4.5e-28	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011579)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24260
malus_domestica	MD00G1191900.v1.1 MD12G1076400.v1.1 MD12G1076700.v1.1 MD14G1074800.v1.1
prunus_persica	Prupe.7G056200_v2.0.a1 Prupe.7G056200_v2.0.a1 Prupe.7G056400_v2.0.a1 Prupe.7G056400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0482931
rosa_laevigata	RLG00000023316
rosa_multiflora	Rmu_ssc0000175.1_g000016
rosa_roxburghii	Rroxscaffold_6G00398830
rosa_rugosa	Rorug03G0202100 Rorug03G0202100
rosa_samantha	Rh3AG251200 Rh3BG287700 Rh3CG285000 Rh3DG280700
rosa_wichuraiana	Rw3G022620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1493
AciI	CCGC	4 cut(s)	231, 561, 1075, 1497
AclWI	GGATC	3 cut(s)	22, 322, 880
AcoI	YGGCCR	1 cut(s)	1315
AcsI	RAATTY	1 cut(s)	1421
AfaI	GTAC	2 cut(s)	32, 1112
AfiI	CCNNNNNNNGG	4 cut(s)	201, 560, 1324, 1534
AflII	CTTAAG	1 cut(s)	731
AflIII	ACRYGT	1 cut(s)	1092
AgsI	TTSAA	8 cut(s)	431, 515, 679, 774, 966, 989, 1206, 1280
AhdI	GACNNNNNGTC	1 cut(s)	1188
AluBI	AGCT	9 cut(s)	23, 350, 434, 842, 1047, 1060, 1331, 1514, 1609
AluI	AGCT	9 cut(s)	23, 350, 434, 842, 1047, 1060, 1331, 1514, 1609
Alw21I	GWGCWC	1 cut(s)	1344
Alw26I	GTCTC	2 cut(s)	401, 490
AlwI	GGATC	3 cut(s)	22, 322, 880
AoxI	GGCC	4 cut(s)	147, 951, 1234, 1315
ApeKI	GCWGC	8 cut(s)	68, 71, 208, 1057, 1473, 1511, 1550, 1553
ApoI	RAATTY	1 cut(s)	1421
ArsI	GACNNNNNNTTYG	2 cut(s)	489, 521
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	2 cut(s)	148, 158
AsuC2I	CCSGG	1 cut(s)	1432
AsuHPI	GGTGA	6 cut(s)	406, 638, 716, 870, 1429, 1552
AvaII	GGWCC	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	1317
BanI	GGYRCC	1 cut(s)	1493
BauI	CACGAG	1 cut(s)	381
BbsI	GAAGAC	2 cut(s)	306, 419
Bbv12I	GWGCWC	1 cut(s)	1344
BbvI	GCAGC	8 cut(s)	80, 83, 195, 1069, 1460, 1523, 1537, 1540
BccI	CCATC	4 cut(s)	614, 1214, 1528, 1653
BceAI	ACGGC	1 cut(s)	1249
BcnI	CCSGG	1 cut(s)	1432
BcoDI	GTCTC	2 cut(s)	401, 490
BfaI	CTAG	3 cut(s)	558, 566, 1098
BfrI	CTTAAG	1 cut(s)	731
BisI	GCNGC	8 cut(s)	69, 72, 209, 1058, 1474, 1512, 1551, 1554
BlsI	GCNGC	8 cut(s)	70, 73, 210, 1059, 1475, 1513, 1552, 1555
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	1432
Bme18I	GGWCC	1 cut(s)	158
BmeRI	GACNNNNNGTC	1 cut(s)	1188
BmgT120I	GGNCC	2 cut(s)	148, 158
BmiI	GGNNCC	3 cut(s)	159, 1162, 1495
BmrFI	CCNGG	1 cut(s)	1432
BmsI	GCATC	4 cut(s)	181, 745, 961, 1566
BpiI	GAAGAC	2 cut(s)	306, 419
Bpu10I	CCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	1432
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	195
BsaXI	ACNNNNNCTCC	2 cut(s)	938, 968
Bsc4I	CCNNNNNNNGG	4 cut(s)	201, 560, 1324, 1534
Bse1I	ACTGG	3 cut(s)	16, 124, 464
Bse3DI	GCAATG	1 cut(s)	609
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	5 cut(s)	10, 241, 625, 1550, 1664
BseLI	CCNNNNNNNGG	4 cut(s)	201, 560, 1324, 1534
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	2 cut(s)	432, 629
BseNI	ACTGG	3 cut(s)	16, 124, 464
BseRI	GAGGAG	1 cut(s)	508
BseXI	GCAGC	8 cut(s)	80, 83, 195, 1069, 1460, 1523, 1537, 1540
BseYI	CCCAGC	2 cut(s)	23, 200
BshFI	GGCC	4 cut(s)	149, 953, 1236, 1317
BshNI	GGYRCC	1 cut(s)	1493
BsiHKAI	GWGCWC	1 cut(s)	1344
BsiSI	CCGG	1 cut(s)	1431
BslFI	GGGAC	1 cut(s)	1195
BslI	CCNNNNNNNGG	4 cut(s)	201, 560, 1324, 1534
BsmAI	GTCTC	2 cut(s)	401, 490
BsmFI	GGGAC	1 cut(s)	1195
BsnI	GGCC	4 cut(s)	149, 953, 1236, 1317
Bso31I	GGTCTC	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	1344
Bsp143I	GATC	6 cut(s)	14, 92, 314, 682, 872, 921
BspACI	CCGC	4 cut(s)	231, 561, 1075, 1497
BspANI	GGCC	4 cut(s)	149, 953, 1236, 1317
BspCNI	CTCAG	2 cut(s)	433, 628
BspHI	TCATGA	2 cut(s)	1239, 1569
BspLI	GGNNCC	3 cut(s)	159, 1162, 1495
BspPI	GGATC	3 cut(s)	22, 322, 880
BspT107I	GGYRCC	1 cut(s)	1493
BspTI	CTTAAG	1 cut(s)	731
BspTNI	GGTCTC	1 cut(s)	401
BsrDI	GCAATG	1 cut(s)	609
BsrI	ACTGG	3 cut(s)	16, 124, 464
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	6 cut(s)	14, 92, 314, 682, 872, 921
BssSI	CACGAG	1 cut(s)	381
BssT1I	CCWWGG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	381
Bst4CI	ACNGT	5 cut(s)	55, 325, 712, 885, 1564
Bst6I	CTCTTC	2 cut(s)	399, 680
BstAFI	CTTAAG	1 cut(s)	731
BstAPI	GCANNNNNTGC	1 cut(s)	1154
BstC8I	GCNNGC	2 cut(s)	66, 213
BstDEI	CTNAG	4 cut(s)	441, 500, 615, 1646
BstF5I	GGATG	5 cut(s)	10, 241, 625, 1550, 1664
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	6 cut(s)	17, 95, 317, 685, 875, 924
BstMAI	GTCTC	2 cut(s)	401, 490
BstMBI	GATC	6 cut(s)	14, 92, 314, 682, 872, 921
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 270, 734, 1154, 1391, 1661
BstNSI	RCATGY	1 cut(s)	1096
BstSCI	CCNGG	1 cut(s)	1430
BstV1I	GCAGC	8 cut(s)	80, 83, 195, 1069, 1460, 1523, 1537, 1540
BstV2I	GAAGAC	2 cut(s)	306, 419
BsuRI	GGCC	4 cut(s)	149, 953, 1236, 1317
BtsCI	GGATG	5 cut(s)	10, 241, 625, 1550, 1664
BtsI	GCAGTG	2 cut(s)	1155, 1361
BtsIMutI	CAGTG	5 cut(s)	273, 321, 1002, 1155, 1361
Cac8I	GCNNGC	2 cut(s)	66, 213
CciI	TCATGA	2 cut(s)	1239, 1569
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	148, 158
Csp6I	GTAC	2 cut(s)	31, 1111
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviAII	CATG	8 cut(s)	154, 533, 1018, 1093, 1240, 1381, 1414, 1570
CviQI	GTAC	2 cut(s)	31, 1111
DdeI	CTNAG	4 cut(s)	441, 500, 615, 1646
DpnI	GATC	6 cut(s)	16, 94, 316, 684, 874, 923
DpnII	GATC	6 cut(s)	14, 92, 314, 682, 872, 921
DriI	GACNNNNNGTC	1 cut(s)	1188
EaeI	YGGCCR	1 cut(s)	1315
Eam1104I	CTCTTC	2 cut(s)	399, 680
Eam1105I	GACNNNNNGTC	1 cut(s)	1188
EarI	CTCTTC	2 cut(s)	399, 680
Eco130I	CCWWGG	1 cut(s)	195
Eco147I	AGGCCT	1 cut(s)	953
Eco31I	GGTCTC	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	8 cut(s)	157, 536, 1021, 1096, 1243, 1384, 1417, 1573
FaqI	GGGAC	1 cut(s)	1195
FatI	CATG	8 cut(s)	153, 532, 1017, 1092, 1239, 1380, 1413, 1569
FauI	CCCGC	2 cut(s)	224, 1082
FauNDI	CATATG	1 cut(s)	900
Fnu4HI	GCNGC	8 cut(s)	69, 72, 209, 1058, 1474, 1512, 1551, 1554
FokI	GGATG	5 cut(s)	17, 248, 632, 1557, 1671
Fsp4HI	GCNGC	8 cut(s)	69, 72, 209, 1058, 1474, 1512, 1551, 1554
FspBI	CTAG	3 cut(s)	558, 566, 1098
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	8 cut(s)	69, 72, 209, 1058, 1474, 1512, 1551, 1554
GsaI	CCCAGC	2 cut(s)	27, 204
HaeIII	GGCC	4 cut(s)	149, 953, 1236, 1317
HapII	CCGG	1 cut(s)	1431
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	8 cut(s)	157, 536, 1021, 1096, 1243, 1384, 1417, 1573
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HindIII	AAGCTT	2 cut(s)	432, 1329
HinfI	GANTC	4 cut(s)	292, 445, 985, 1462
HpaII	CCGG	1 cut(s)	1431
HphI	GGTGA	6 cut(s)	406, 638, 716, 870, 1429, 1552
Hpy166II	GTNNAC	1 cut(s)	1065
Hpy188I	TCNGA	4 cut(s)	141, 754, 820, 1596
Hpy8I	GTNNAC	1 cut(s)	1065
HpyAV	CCTTC	6 cut(s)	171, 375, 618, 1174, 1484, 1590
HpyCH4III	ACNGT	5 cut(s)	55, 325, 712, 885, 1564
HpyCH4V	TGCA	6 cut(s)	8, 128, 215, 974, 1476, 1511
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 270, 734, 1154, 1391, 1661
HpyF3I	CTNAG	4 cut(s)	441, 500, 615, 1646
Hsp92II	CATG	8 cut(s)	157, 536, 1021, 1096, 1243, 1384, 1417, 1573
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	6 cut(s)	14, 92, 314, 682, 872, 921
Lsp1109I	GCAGC	8 cut(s)	80, 83, 195, 1069, 1460, 1523, 1537, 1540
LweI	GCATC	4 cut(s)	181, 745, 961, 1566
MaeI	CTAG	3 cut(s)	558, 566, 1098
MaeIII	GTNAC	3 cut(s)	115, 289, 1483
MalI	GATC	6 cut(s)	16, 94, 316, 684, 874, 923
MboI	GATC	6 cut(s)	14, 92, 314, 682, 872, 921
MboII	GAAGA	6 cut(s)	311, 416, 419, 667, 739, 1292
MfeI	CAATTG	1 cut(s)	1197
MhlI	GDGCHC	1 cut(s)	1344
MlsI	TGGCCA	1 cut(s)	1317
MluCI	AATT	5 cut(s)	865, 936, 1197, 1283, 1421
MluNI	TGGCCA	1 cut(s)	1317
MlyI	GAGTC	2 cut(s)	286, 454
MmeI	TCCRAC	1 cut(s)	1371
Mox20I	TGGCCA	1 cut(s)	1317
MscI	TGGCCA	1 cut(s)	1317
MseI	TTAA	7 cut(s)	107, 521, 669, 732, 939, 1121, 1286
MslI	CAYNNNNRTG	3 cut(s)	419, 1148, 1574
Msp20I	TGGCCA	1 cut(s)	1317
MspA1I	CMGCKG	2 cut(s)	23, 1060
MspCI	CTTAAG	1 cut(s)	731
MspI	CCGG	1 cut(s)	1431
MspR9I	CCNGG	1 cut(s)	1432
MunI	CAATTG	1 cut(s)	1197
MwoI	GCNNNNNNNGC	6 cut(s)	68, 270, 734, 1154, 1391, 1661
NciI	CCSGG	1 cut(s)	1432
NdeI	CATATG	1 cut(s)	900
NdeII	GATC	6 cut(s)	14, 92, 314, 682, 872, 921
NlaIII	CATG	8 cut(s)	157, 536, 1021, 1096, 1243, 1384, 1417, 1573
NlaIV	GGNNCC	3 cut(s)	159, 1162, 1495
NmuCI	GTSAC	2 cut(s)	289, 1483
NspI	RCATGY	1 cut(s)	1096
PagI	TCATGA	2 cut(s)	1239, 1569
PceI	AGGCCT	1 cut(s)	953
PciI	ACATGT	1 cut(s)	1092
PfeI	GAWTC	2 cut(s)	985, 1462
PkrI	GCNGC	8 cut(s)	70, 73, 210, 1059, 1475, 1513, 1552, 1555
PleI	GAGTC	2 cut(s)	286, 453
PpsI	GAGTC	2 cut(s)	286, 453
PpuMI	RGGWCCY	1 cut(s)	158
PscI	ACATGT	1 cut(s)	1092
Psp5II	RGGWCCY	1 cut(s)	158
PspFI	CCCAGC	2 cut(s)	23, 200
PspN4I	GGNNCC	3 cut(s)	159, 1162, 1495
PspPI	GGNCC	2 cut(s)	148, 158
PspPPI	RGGWCCY	1 cut(s)	158
PvuII	CAGCTG	2 cut(s)	23, 1060
RsaI	GTAC	2 cut(s)	32, 1112
RsaNI	GTAC	2 cut(s)	31, 1111
RseI	CAYNNNNRTG	3 cut(s)	419, 1148, 1574
SaqAI	TTAA	7 cut(s)	107, 521, 669, 732, 939, 1121, 1286
SatI	GCNGC	8 cut(s)	69, 72, 209, 1058, 1474, 1512, 1551, 1554
Sau3AI	GATC	6 cut(s)	14, 92, 314, 682, 872, 921
Sau96I	GGNCC	2 cut(s)	148, 158
ScaI	AGTACT	1 cut(s)	32
SchI	GAGTC	2 cut(s)	286, 454
ScrFI	CCNGG	1 cut(s)	1432
SduI	GDGCHC	1 cut(s)	1344
SfaNI	GCATC	4 cut(s)	181, 745, 961, 1566
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	3 cut(s)	419, 1148, 1574
SmlI	CTYRAG	2 cut(s)	294, 731
SmoI	CTYRAG	2 cut(s)	294, 731
Sse9I	AATT	5 cut(s)	865, 936, 1197, 1283, 1421
SseBI	AGGCCT	1 cut(s)	953
SsiI	CCGC	4 cut(s)	231, 561, 1075, 1497
SspI	AATATT	1 cut(s)	519
SspMI	CTAG	3 cut(s)	558, 566, 1098
StuI	AGGCCT	1 cut(s)	953
StyD4I	CCNGG	1 cut(s)	1430
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	5 cut(s)	55, 325, 712, 885, 1564
TaqI	TCGA	1 cut(s)	805
TasI	AATT	5 cut(s)	865, 936, 1197, 1283, 1421
TatI	WGTACW	1 cut(s)	30
TfiI	GAWTC	2 cut(s)	985, 1462
Tru1I	TTAA	7 cut(s)	107, 521, 669, 732, 939, 1121, 1286
Tru9I	TTAA	7 cut(s)	107, 521, 669, 732, 939, 1121, 1286
TscAI	CASTG	5 cut(s)	280, 328, 1009, 1155, 1368
TseFI	GTSAC	2 cut(s)	289, 1483
TseI	GCWGC	8 cut(s)	68, 71, 208, 1057, 1473, 1511, 1550, 1553
Tsp45I	GTSAC	2 cut(s)	289, 1483
TspRI	CASTG	5 cut(s)	280, 328, 1009, 1155, 1368
Vha464I	CTTAAG	1 cut(s)	731
VpaK11BI	GGWCC	1 cut(s)	158
XapI	RAATTY	1 cut(s)	1421
XbaI	TCTAGA	2 cut(s)	565, 1097
XceI	RCATGY	1 cut(s)	1096
XcmI	CCANNNNNNNNNTGG	2 cut(s)	142, 1620
XspI	CTAG	3 cut(s)	558, 566, 1098
ZrmI	AGTACT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.