FvH4_6g24620

Cytokinin dehydrogenase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
18679631 .. 18682818
3188 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24620.t1

Sequence Viewer

Length: 1638 bp
ATGGAGTCACCTCCACGCAGCTTCCACAAACAGAACAACATTGTCTGCCTCAAACTCTGCTTGCTTTTATTCATGGGCTGTGTACCAGATACAACCAACCTTAGTTACAGCCAATTTCTGGACACCCCGGCCATTATTCCATACAACTCCTCTGATATGGCATCACCTTTTCAAACACTAAGCCTTGATGGTTACTTGAGTTTTGACAACAACCATCATACAGCAAAGGACTTTGGCAACGTATACCATCACCTACCATCAGCAGTACTATATCCAAAATCTGTTTCCGATATCTCCTCCACAATAAAGCTCATATTTGAAATGGGTTCTGGTTCTGAGCTTACAGTTGCTGCTAGAGGACATGGTCACTCCTTTCATGGTCAAGCTCAAGCTCATCGAGGCGTAGTCATCAATATGGAATCACTTAAGGGATCTCCAGAGATGCAGGTTCATCTTGGACAGCAACCTTATGTGGATGTATCGGGTGGCGAGTTATGGATAAATATTTTGCATGAGACACTCAAACATGGGTTGGCACCAAAATCTTGGACAGATTATCTTCACCTTACCGTTGGCGGGACTTTGTCAAATGCCGGAATAAGTGGTCAGGCGTTCCGGCATGGACCCCAGATCAACAATGTCTATCAGCTGGAGGTTGTCACAGGAAAAGGAGACATAATTACCTGTTCAGGGAAGCAAGATCCAGAACTTTTCTATGCTGTTCTGGGAGGGCTAGGACAGTTTGGCATCATTACAAAGGCTAGAATTTCTCTTCAACCGGCACAAAAAATGGTTAAGTGGATCAGAGTGCTGTACTCAGACTTCTCATTGTTTTCAAAGGACCAAGAGCTTCTCATATCAGCTGAAAATTCATTTGACTACATCGAAGGATTTGTTATAATTAACAGAACAGGTCTTCTCAATAACTGGAGGTCTTCCTTCAATCCTAAAGATCCAATTCAAGCAAGCCAATTTAACTCGGATGGAAAAACACTCTACTGCCTAGAAATGGCCAAATATTTTAACCCAGAAGAAACTGATGTCATGGATCAGATAATTAAGATTTTACTGTCAAAATTGCAATACATCCCATCCACCCTCTTCACCTCGGAAGTTTCCTTTGTAAACTTCCTTGAGAGAGTGCATTTGTCTGAGATAAAACTACGAGAAAAAGGATTATGGGAGGTTCCCCACCCCTGGATAAACCTTCTCATTCCTAAAAGCAAGATACATGAATTTGCTGAAGAGGTCTTCGGCAACATTCTCACAGACAATATCAACGGTCCTATCCTCATGTACCCAGTCAACAAAACCATGTGGAACAACAAAACATCTTTGGTAACCCCCGATGAAGATGTTTTCTACCTAGTTGCATTCTTATCATCTGTGGTGCCATCTTCCACAGGAACTGATGGCTTTGATAAAATTTTAACTCTAAACAGAAGAATCTTACAGTACTCTGCTACAGCTAACCTGGGTATCAGGCAATATCTGCCCCATTATAGAACCCAAGAAGAGTGGCGAGCTCATTTTGGCTCTCAATGGAAAGTTTTCATACAGAGGAAGTCTTCTTATGACCCTTTGGCAATCCTTGCTCCTGGACAGAGGATCTTTAAAAAGGCGGTTCCCATCATATGA

Protein Analysis

546

Amino Acids

61.33

Weight (kDa)

6.68

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 86 - 230 1e-18 FAD binding domain
Cytokin-bind PF09265 263 - 538 7.1e-114 Cytokinin dehydrogenase 1, FAD and cytokinin binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012819)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 899
Acc36I ACCTGC 1 cut(s) 436
AccB1I GGYRCC 2 cut(s) 535, 1390
AccB7I CCANNNNNTGG 1 cut(s) 118
AccI GTMKAC 1 cut(s) 243
AciI CCGC 2 cut(s) 576, 1622
AclWI GGATC 6 cut(s) 439, 695, 809, 947, 1056, 1616
AcoI YGGCCR 2 cut(s) 129, 1011
AcsI RAATTY 4 cut(s) 765, 868, 1235, 1425
AcuI CTGAAG 1 cut(s) 1263
AfaI GTAC 5 cut(s) 84, 267, 815, 1298, 1457
AfiI CCNNNNNNNGG 5 cut(s) 118, 576, 690, 1009, 1197
AflII CTTAAG 1 cut(s) 425
AgsI TTSAA 6 cut(s) 173, 320, 776, 837, 943, 962
AjnI CCWGG 3 cut(s) 1196, 1473, 1597
AjuI GAANNNNNNNTTGG 2 cut(s) 268, 300
Alw21I GWGCWC 1 cut(s) 1528
Alw26I GTCTC 2 cut(s) 509, 666
AlwI GGATC 6 cut(s) 439, 695, 809, 947, 1056, 1616
AlwNI CAGNNNCTG 2 cut(s) 350, 1409
AoxI GGCC 2 cut(s) 129, 1011
ApeKI GCWGC 2 cut(s) 18, 350
ApoI RAATTY 4 cut(s) 765, 868, 1235, 1425
Asp700I GAANNNNTTC 1 cut(s) 1550
AspS9I GGNCC 3 cut(s) 623, 841, 1283
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 4 cut(s) 156, 242, 554, 1096
AvaII GGWCC 3 cut(s) 623, 841, 1283
BaeI ACNNNNGTAYC 2 cut(s) 1462, 1495
BalI TGGCCA 1 cut(s) 1013
BanI GGYRCC 2 cut(s) 535, 1390
BanII GRGCYC 1 cut(s) 1528
BarI GAAGNNNNNNTAC 2 cut(s) 806, 838
BbsI GAAGAC 4 cut(s) 908, 927, 1243, 1560
Bbv12I GWGCWC 1 cut(s) 1528
BbvI GCAGC 2 cut(s) 30, 337
BccI CCATC 9 cut(s) 182, 222, 255, 265, 977, 1099, 1402, 1406, 1637
BciT130I CCWGG 3 cut(s) 1198, 1475, 1599
BcnI CCSGG 1 cut(s) 128
BcoDI GTCTC 2 cut(s) 509, 666
BfaI CTAG 5 cut(s) 354, 734, 762, 1004, 1367
BfmI CTRYAG 1 cut(s) 1464
BfrI CTTAAG 1 cut(s) 425
BfuAI ACCTGC 1 cut(s) 436
BisI GCNGC 2 cut(s) 19, 351
BlsI GCNGC 2 cut(s) 20, 352
BmcAI AGTACT 2 cut(s) 267, 1457
Bme1390I CCNGG 4 cut(s) 128, 1198, 1475, 1599
Bme18I GGWCC 3 cut(s) 623, 841, 1283
BmgT120I GGNCC 3 cut(s) 623, 841, 1283
BmiI GGNNCC 5 cut(s) 537, 625, 1188, 1392, 1626
BmrFI CCNGG 4 cut(s) 128, 1198, 1475, 1599
BmrI ACTGGG 1 cut(s) 1295
BmsI GCATC 3 cut(s) 170, 432, 756
BmuI ACTGGG 1 cut(s) 1295
BpiI GAAGAC 4 cut(s) 908, 927, 1243, 1560
BpmI CTGGAG 3 cut(s) 420, 671, 949
BpuEI CTTGAG 3 cut(s) 217, 372, 1154
BpuMI CCSGG 1 cut(s) 128
BsaJI CCNNGG 4 cut(s) 126, 1107, 1196, 1474
Bsc4I CCNNNNNNNGG 5 cut(s) 118, 576, 690, 1009, 1197
Bse118I RCCGGY 1 cut(s) 778
Bse1I ACTGG 2 cut(s) 932, 1301
BseBI CCWGG 3 cut(s) 1198, 1475, 1599
BseDI CCNNGG 4 cut(s) 126, 1107, 1196, 1474
BseGI GGATG 4 cut(s) 481, 988, 1086, 1091
BseLI CCNNNNNNNGG 5 cut(s) 118, 576, 690, 1009, 1197
BseMII CTCAG 3 cut(s) 327, 831, 1143
BseNI ACTGG 2 cut(s) 932, 1301
BseRI GAGGAG 2 cut(s) 139, 286
BseXI GCAGC 2 cut(s) 30, 337
BshFI GGCC 2 cut(s) 131, 1013
BshNI GGYRCC 2 cut(s) 535, 1390
BsiHKAI GWGCWC 1 cut(s) 1528
BsiSI CCGG 4 cut(s) 128, 594, 616, 779
BslFI GGGAC 1 cut(s) 592
BslI CCNNNNNNNGG 5 cut(s) 118, 576, 690, 1009, 1197
BsmAI GTCTC 2 cut(s) 509, 666
BsmFI GGGAC 1 cut(s) 592
BsmI GAATGC 1 cut(s) 1373
BsnI GGCC 2 cut(s) 131, 1013
Bsp1286I GDGCHC 1 cut(s) 1528
Bsp143I GATC 7 cut(s) 431, 630, 700, 801, 952, 1048, 1608
BspACI CCGC 2 cut(s) 576, 1622
BspANI GGCC 2 cut(s) 131, 1013
BspCNI CTCAG 3 cut(s) 328, 830, 1144
BspLI GGNNCC 5 cut(s) 537, 625, 1188, 1392, 1626
BspMI ACCTGC 1 cut(s) 436
BspPI GGATC 6 cut(s) 439, 695, 809, 947, 1056, 1616
BspT107I GGYRCC 2 cut(s) 535, 1390
BspTI CTTAAG 1 cut(s) 425
BsrFI RCCGGY 1 cut(s) 778
BsrI ACTGG 2 cut(s) 932, 1301
BssAI RCCGGY 1 cut(s) 778
BssECI CCNNGG 4 cut(s) 126, 1107, 1196, 1474
BssMI GATC 7 cut(s) 431, 630, 700, 801, 952, 1048, 1608
BssNAI GTATAC 1 cut(s) 244
Bst1107I GTATAC 1 cut(s) 244
Bst2UI CCWGG 3 cut(s) 1198, 1475, 1599
Bst4CI ACNGT 6 cut(s) 346, 571, 741, 1071, 1283, 1455
Bst6I CTCTTC 4 cut(s) 777, 1106, 1239, 1509
BstAFI CTTAAG 1 cut(s) 425
BstAPI GCANNNNNTGC 2 cut(s) 1492, 1592
BstC8I GCNNGC 3 cut(s) 62, 967, 1524
BstDEI CTNAG 5 cut(s) 101, 179, 336, 817, 1152
BstEII GGTNACC 1 cut(s) 1339
BstF5I GGATG 4 cut(s) 481, 988, 1086, 1091
BstKTI GATC 7 cut(s) 434, 633, 703, 804, 955, 1051, 1611
BstMAI GTCTC 2 cut(s) 509, 666
BstMBI GATC 7 cut(s) 431, 630, 700, 801, 952, 1048, 1608
BstMWI GCNNNNNNNGC 2 cut(s) 1492, 1592
BstNI CCWGG 3 cut(s) 1198, 1475, 1599
BstPI GGTNACC 1 cut(s) 1339
BstSCI CCNGG 4 cut(s) 126, 1196, 1473, 1597
BstSFI CTRYAG 1 cut(s) 1464
BstV1I GCAGC 2 cut(s) 30, 337
BstV2I GAAGAC 4 cut(s) 908, 927, 1243, 1560
BstX2I RGATCY 4 cut(s) 431, 700, 952, 1608
BstXI CCANNNNNNTGG 1 cut(s) 546
BstYI RGATCY 4 cut(s) 431, 700, 952, 1608
BstZ17I GTATAC 1 cut(s) 244
BsuRI GGCC 2 cut(s) 131, 1013
BtsCI GGATG 4 cut(s) 481, 988, 1086, 1091
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 3 cut(s) 62, 967, 1524
CaiI CAGNNNCTG 2 cut(s) 350, 1409
Cfr10I RCCGGY 1 cut(s) 778
Cfr13I GGNCC 3 cut(s) 623, 841, 1283
Csp6I GTAC 5 cut(s) 83, 266, 814, 1297, 1456
CspCI CAANNNNNGTGG 2 cut(s) 1499, 1534
CviQI GTAC 5 cut(s) 83, 266, 814, 1297, 1456
DdeI CTNAG 5 cut(s) 101, 179, 336, 817, 1152
DpnI GATC 7 cut(s) 433, 632, 702, 803, 954, 1050, 1610
DpnII GATC 7 cut(s) 431, 630, 700, 801, 952, 1048, 1608
DraI TTTAAA 1 cut(s) 1615
EaeI YGGCCR 2 cut(s) 129, 1011
Eam1104I CTCTTC 4 cut(s) 777, 1106, 1239, 1509
EarI CTCTTC 4 cut(s) 777, 1106, 1239, 1509
Ecl136II GAGCTC 1 cut(s) 1526
Eco24I GRGCYC 1 cut(s) 1528
Eco32I GATATC 1 cut(s) 292
Eco47I GGWCC 3 cut(s) 623, 841, 1283
Eco53kI GAGCTC 1 cut(s) 1526
Eco57I CTGAAG 1 cut(s) 1263
Eco91I GGTNACC 1 cut(s) 1339
EcoICRI GAGCTC 1 cut(s) 1526
EcoO65I GGTNACC 1 cut(s) 1339
EcoRII CCWGG 3 cut(s) 1196, 1473, 1597
EcoRV GATATC 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 1528
FaqI GGGAC 1 cut(s) 592
FauI CCCGC 1 cut(s) 569
FauNDI CATATG 1 cut(s) 1634
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 19, 351
FokI GGATG 4 cut(s) 488, 995, 1073, 1078
FriOI GRGCYC 1 cut(s) 1528
Fsp4HI GCNGC 2 cut(s) 19, 351
FspBI CTAG 5 cut(s) 354, 734, 762, 1004, 1367
GluI GCNGC 2 cut(s) 19, 351
GsuI CTGGAG 3 cut(s) 420, 671, 949
HaeIII GGCC 2 cut(s) 131, 1013
HapII CCGG 4 cut(s) 128, 594, 616, 779
HincII GTYRAC 1 cut(s) 1306
HindII GTYRAC 1 cut(s) 1306
HinfI GANTC 3 cut(s) 5, 419, 1446
HpaII CCGG 4 cut(s) 128, 594, 616, 779
HphI GGTGA 4 cut(s) 156, 242, 554, 1096
Hpy166II GTNNAC 4 cut(s) 83, 244, 1126, 1306
Hpy188I TCNGA 9 cut(s) 154, 289, 337, 806, 820, 982, 1053, 1111, 1153
Hpy188III TCNNGA 3 cut(s) 119, 437, 704
Hpy8I GTNNAC 4 cut(s) 83, 244, 1126, 1306
HpyAV CCTTC 3 cut(s) 881, 949, 1217
HpyCH4III ACNGT 6 cut(s) 346, 571, 741, 1071, 1283, 1455
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 5 cut(s) 445, 511, 1081, 1144, 1373
HpyF10VI GCNNNNNNNGC 2 cut(s) 1492, 1592
HpyF3I CTNAG 5 cut(s) 101, 179, 336, 817, 1152
HpySE526I ACGT 1 cut(s) 240
Kzo9I GATC 7 cut(s) 431, 630, 700, 801, 952, 1048, 1608
LmnI GCTCC 1 cut(s) 1600
Lsp1109I GCAGC 2 cut(s) 30, 337
LweI GCATC 3 cut(s) 170, 432, 756
MaeI CTAG 5 cut(s) 354, 734, 762, 1004, 1367
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 6 cut(s) 6, 104, 191, 365, 658, 1339
MalI GATC 7 cut(s) 433, 632, 702, 803, 954, 1050, 1610
MboI GATC 7 cut(s) 431, 630, 700, 801, 952, 1048, 1608
MflI RGATCY 4 cut(s) 431, 700, 952, 1608
MhlI GDGCHC 1 cut(s) 1528
MlsI TGGCCA 1 cut(s) 1013
MluNI TGGCCA 1 cut(s) 1013
MlyI GAGTC 1 cut(s) 14
Mox20I TGGCCA 1 cut(s) 1013
MroXI GAANNNNTTC 1 cut(s) 1550
MscI TGGCCA 1 cut(s) 1013
MseI TTAA 8 cut(s) 426, 795, 903, 975, 1023, 1059, 1430, 1614
MslI CAYNNNNRTG 1 cut(s) 413
Msp20I TGGCCA 1 cut(s) 1013
MspA1I CMGCKG 2 cut(s) 649, 863
MspCI CTTAAG 1 cut(s) 425
MspI CCGG 4 cut(s) 128, 594, 616, 779
MspR9I CCNGG 4 cut(s) 128, 1198, 1475, 1599
Mva1269I GAATGC 1 cut(s) 1373
MvaI CCWGG 3 cut(s) 1198, 1475, 1599
MwoI GCNNNNNNNGC 2 cut(s) 1492, 1592
NciI CCSGG 1 cut(s) 128
NdeI CATATG 1 cut(s) 1634
NdeII GATC 7 cut(s) 431, 630, 700, 801, 952, 1048, 1608
NlaIV GGNNCC 5 cut(s) 537, 625, 1188, 1392, 1626
NmuCI GTSAC 3 cut(s) 6, 365, 658
PctI GAATGC 1 cut(s) 1373
PdmI GAANNNNTTC 1 cut(s) 1550
PfeI GAWTC 2 cut(s) 419, 1446
PflFI GACNNNGTC 2 cut(s) 363, 583
PflMI CCANNNNNTGG 1 cut(s) 118
PfoI TCCNGGA 1 cut(s) 1597
PkrI GCNGC 2 cut(s) 20, 352
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PsiI TTATAA 1 cut(s) 899
Psp124BI GAGCTC 1 cut(s) 1528
Psp6I CCWGG 3 cut(s) 1196, 1473, 1597
PspEI GGTNACC 1 cut(s) 1339
PspGI CCWGG 3 cut(s) 1196, 1473, 1597
PspN4I GGNNCC 5 cut(s) 537, 625, 1188, 1392, 1626
PspPI GGNCC 3 cut(s) 623, 841, 1283
PstNI CAGNNNCTG 2 cut(s) 350, 1409
PsuI RGATCY 4 cut(s) 431, 700, 952, 1608
PsyI GACNNNGTC 2 cut(s) 363, 583
PvuII CAGCTG 2 cut(s) 649, 863
RsaI GTAC 5 cut(s) 84, 267, 815, 1298, 1457
RsaNI GTAC 5 cut(s) 83, 266, 814, 1297, 1456
RseI CAYNNNNRTG 1 cut(s) 413
SacI GAGCTC 1 cut(s) 1528
SaqAI TTAA 8 cut(s) 426, 795, 903, 975, 1023, 1059, 1430, 1614
SatI GCNGC 2 cut(s) 19, 351
Sau3AI GATC 7 cut(s) 431, 630, 700, 801, 952, 1048, 1608
Sau96I GGNCC 3 cut(s) 623, 841, 1283
ScaI AGTACT 2 cut(s) 267, 1457
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 4 cut(s) 128, 1198, 1475, 1599
SduI GDGCHC 1 cut(s) 1528
SfaNI GCATC 3 cut(s) 170, 432, 756
SfcI CTRYAG 1 cut(s) 1464
SinI GGWCC 3 cut(s) 623, 841, 1283
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 4 cut(s) 196, 387, 425, 1133
SmoI CTYRAG 4 cut(s) 196, 387, 425, 1133
SsiI CCGC 2 cut(s) 576, 1622
SspI AATATT 2 cut(s) 505, 1019
SspMI CTAG 5 cut(s) 354, 734, 762, 1004, 1367
SstI GAGCTC 1 cut(s) 1528
StyD4I CCNGG 4 cut(s) 126, 1196, 1473, 1597
TaaI ACNGT 6 cut(s) 346, 571, 741, 1071, 1283, 1455
TaiI ACGT 1 cut(s) 243
TaqI TCGA 2 cut(s) 397, 885
TatI WGTACW 3 cut(s) 265, 813, 1455
TfiI GAWTC 2 cut(s) 419, 1446
Tru1I TTAA 8 cut(s) 426, 795, 903, 975, 1023, 1059, 1430, 1614
Tru9I TTAA 8 cut(s) 426, 795, 903, 975, 1023, 1059, 1430, 1614
TseFI GTSAC 3 cut(s) 6, 365, 658
TseI GCWGC 2 cut(s) 18, 350
Tsp45I GTSAC 3 cut(s) 6, 365, 658
TspDTI ATGAA 7 cut(s) 61, 365, 440, 861, 1248, 1365, 1543
Tth111I GACNNNGTC 2 cut(s) 363, 583
Van91I CCANNNNNTGG 1 cut(s) 118
Vha464I CTTAAG 1 cut(s) 425
VpaK11BI GGWCC 3 cut(s) 623, 841, 1283
XapI RAATTY 4 cut(s) 765, 868, 1235, 1425
XmiI GTMKAC 1 cut(s) 243
XmnI GAANNNNTTC 1 cut(s) 1550
XspI CTAG 5 cut(s) 354, 734, 762, 1004, 1367
ZrmI AGTACT 2 cut(s) 267, 1457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.