Rmu_sc0003477.1_g000016

Cytokinin dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003477.1
Physical Location & Seq
Forward (+)
102218 .. 104380
2163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003477.1_g000016.1.cds

Sequence Viewer

Length: 1644 bp
atggactcacctccatacagcttccacaaacagaacaacatggtctacctcaaactttgcttgattttattcatgggttgtgtaccagatacaaccaacatctgttccaaccaatttctggccaccccaaccattattccataccgcttagatccatctcatatcacttcaccttttcaaacactaagccttgatggttacttgagttttgacaacaaccatcatacagcaaaggactttggcaacatataccatttccaaccgtcagcagtactatatccaaaatctgtttctgatatctcctgcataataaagcatatatttgaaatgggttctggttctgagctcacagttgctgccagaggacatggtcactcccttcaaggtcaagctcaagctcatcgaggcatagtcatcagcatggaatcacttaagggatctccaaaaatgcaggttcatattggaaagcgaccttatgtggatgtttcgggtggtgagttatggataaatattctgcatgagacactcaaacatgggttggcaccaaaatcttggacagattaccttcacctcaccgttggcgggactttgtcaaatgccggaatcagtggtcaggcattccggcatggaccccagatcaacaatgtctatcagctggaggttgtcacaggaaaaggagacataattacctgttccgaaaagaaaaatgcagaccttttctatgctgttctgggagggctgggacagtttggcatcattacaaaggctagaatttctcttcaatcggcaccaaagatggttaagtggatcagagtgctgtactcagacttctcattattttcaaaggaccaagagcttctcatatcatctgcaaattcatttgactacattgaaggatttgttataattaacagaacaggtcttcttaatagctggaggtcttccttcaatcctaaagatccaattcacgccagccaatttagctcggatggtaaaacactctactgcctagaaatggccaaatactataacccagacgaaactgatgtcatggatcagagaactgagatcttactgtcaggattacaatatatcccatccaccctcttcacgtcagaagtttcctttgtaaacttcctagatagagttcatttgtctgagagaaaactacgagaaaaaggattatgggatgttccccacccgtggataaaccttctcatccctaaaagcaagatacatgagtttgctgaagaggtctttggcaacattctcacagacaatatcaatggtcctatcctcatgtacccagtcaacaaaaccaagtggaacaacagcacatctttggttaccccagatgaagatgtattctacctagttgcattcttgtcctctgtggtgccatcttccacaggaacagatggctttgacaaaattttaacactaaacagaagaatcttacagtactctgctacagctaacctgggtatcaagcaatatctgccccattacagaacccaaggagagtggcgagctcattttggctctcgatggaaagttttcctacagaggaagtcttcttatgaccctttggcaatccttgctcccgggcagagaatctttaaaaaggcggctcccatcctatga

Protein Analysis

547

Amino Acids

61.46

Weight (kDa)

8.64

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012819)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 905
Acc36I ACCTGC 1 cut(s) 442
AccB1I GGYRCC 3 cut(s) 541, 787, 1396
AccB7I CCANNNNNTGG 1 cut(s) 118
AccI GTMKAC 1 cut(s) 45
AciI CCGC 3 cut(s) 145, 582, 1628
AclWI GGATC 5 cut(s) 146, 445, 815, 953, 1062
AcoI YGGCCR 2 cut(s) 120, 1017
AcsI RAATTY 3 cut(s) 771, 874, 1431
AcuI CTGAAG 1 cut(s) 1269
AfaI GTAC 5 cut(s) 84, 273, 821, 1304, 1463
AfiI CCNNNNNNNGG 4 cut(s) 118, 582, 1015, 1203
AflII CTTAAG 1 cut(s) 431
AgsI TTSAA 7 cut(s) 179, 326, 383, 782, 843, 893, 949
AjiI CACGTC 1 cut(s) 1113
AjnI CCWGG 1 cut(s) 1479
AjuI GAANNNNNNNTTGG 4 cut(s) 274, 306, 1242, 1274
Alw21I GWGCWC 2 cut(s) 348, 1534
Alw26I GTCTC 2 cut(s) 515, 672
AlwI GGATC 5 cut(s) 146, 445, 815, 953, 1062
AlwNI CAGNNNCTG 1 cut(s) 356
Ama87I CYCGRG 1 cut(s) 1604
AoxI GGCC 2 cut(s) 120, 1017
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 3 cut(s) 771, 874, 1431
ArsI GACNNNNNNTTYG 2 cut(s) 1032, 1064
Asp700I GAANNNNTTC 1 cut(s) 1556
AspS9I GGNCC 3 cut(s) 629, 847, 1289
AsuC2I CCSGG 2 cut(s) 1605, 1606
AsuHPI GGTGA 4 cut(s) 162, 506, 560, 565
AvaI CYCGRG 1 cut(s) 1604
AvaII GGWCC 3 cut(s) 629, 847, 1289
BaeI ACNNNNGTAYC 4 cut(s) 1226, 1259, 1468, 1501
BalI TGGCCA 2 cut(s) 122, 1019
BanI GGYRCC 3 cut(s) 541, 787, 1396
BanII GRGCYC 2 cut(s) 348, 1534
BarI GAAGNNNNNNTAC 2 cut(s) 812, 844
BbsI GAAGAC 3 cut(s) 914, 933, 1566
Bbv12I GWGCWC 2 cut(s) 348, 1534
BbvI GCAGC 1 cut(s) 343
BciT130I CCWGG 1 cut(s) 1481
BcnI CCSGG 2 cut(s) 1605, 1606
BcoDI GTCTC 2 cut(s) 515, 672
BfaI CTAG 4 cut(s) 768, 1010, 1139, 1373
BfmI CTRYAG 2 cut(s) 1470, 1562
BfrI CTTAAG 1 cut(s) 431
BfuAI ACCTGC 1 cut(s) 442
BglII AGATCT 1 cut(s) 1068
BisI GCNGC 2 cut(s) 357, 1629
BlsI GCNGC 2 cut(s) 358, 1630
BmcAI AGTACT 2 cut(s) 273, 1463
Bme1390I CCNGG 3 cut(s) 1481, 1605, 1606
Bme18I GGWCC 3 cut(s) 629, 847, 1289
BmeT110I CYCGRG 1 cut(s) 1604
BmgBI CACGTC 1 cut(s) 1113
BmgT120I GGNCC 3 cut(s) 629, 847, 1289
BmiI GGNNCC 5 cut(s) 543, 631, 789, 1398, 1632
BmrFI CCNGG 3 cut(s) 1481, 1605, 1606
BmrI ACTGGG 1 cut(s) 1301
BmsI GCATC 1 cut(s) 762
BmuI ACTGGG 1 cut(s) 1301
BpiI GAAGAC 3 cut(s) 914, 933, 1566
BpmI CTGGAG 2 cut(s) 677, 955
BpuEI CTTGAG 2 cut(s) 223, 378
BpuMI CCSGG 2 cut(s) 1605, 1606
BsaJI CCNNGG 4 cut(s) 1202, 1480, 1516, 1604
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 582, 1015, 1203
Bse1I ACTGG 1 cut(s) 1307
BseBI CCWGG 1 cut(s) 1481
BseDI CCNNGG 4 cut(s) 1202, 1480, 1516, 1604
BseGI GGATG 6 cut(s) 487, 994, 1097, 1195, 1218, 1635
BseLI CCNNNNNNNGG 4 cut(s) 118, 582, 1015, 1203
BseMII CTCAG 4 cut(s) 333, 837, 1056, 1149
BseNI ACTGG 1 cut(s) 1307
BseXI GCAGC 1 cut(s) 343
BseYI CCCAGC 1 cut(s) 739
BshFI GGCC 2 cut(s) 122, 1019
BshNI GGYRCC 3 cut(s) 541, 787, 1396
BsiHKAI GWGCWC 2 cut(s) 348, 1534
BsiHKCI CYCGRG 1 cut(s) 1604
BsiSI CCGG 3 cut(s) 600, 622, 1605
BslFI GGGAC 2 cut(s) 598, 756
BslI CCNNNNNNNGG 4 cut(s) 118, 582, 1015, 1203
BsmAI GTCTC 2 cut(s) 515, 672
BsmFI GGGAC 2 cut(s) 598, 756
BsmI GAATGC 2 cut(s) 617, 1379
BsnI GGCC 2 cut(s) 122, 1019
BsoBI CYCGRG 1 cut(s) 1604
Bsp1286I GDGCHC 2 cut(s) 348, 1534
Bsp143I GATC 7 cut(s) 151, 437, 636, 807, 958, 1054, 1068
BspACI CCGC 3 cut(s) 145, 582, 1628
BspANI GGCC 2 cut(s) 122, 1019
BspCNI CTCAG 4 cut(s) 334, 836, 1057, 1150
BspLI GGNNCC 5 cut(s) 543, 631, 789, 1398, 1632
BspMI ACCTGC 1 cut(s) 442
BspPI GGATC 5 cut(s) 146, 445, 815, 953, 1062
BspT107I GGYRCC 3 cut(s) 541, 787, 1396
BspTI CTTAAG 1 cut(s) 431
BsrI ACTGG 1 cut(s) 1307
BssECI CCNNGG 4 cut(s) 1202, 1480, 1516, 1604
BssMI GATC 7 cut(s) 151, 437, 636, 807, 958, 1054, 1068
BssT1I CCWWGG 1 cut(s) 1516
Bst2UI CCWGG 1 cut(s) 1481
Bst4CI ACNGT 6 cut(s) 264, 352, 577, 747, 1077, 1461
Bst6I CTCTTC 3 cut(s) 783, 1112, 1245
BstAFI CTTAAG 1 cut(s) 431
BstAPI GCANNNNNTGC 2 cut(s) 1498, 1598
BstC8I GCNNGC 2 cut(s) 973, 1530
BstDEI CTNAG 6 cut(s) 148, 185, 342, 823, 1065, 1158
BstDSI CCRYGG 1 cut(s) 1202
BstEII GGTNACC 1 cut(s) 1345
BstF5I GGATG 6 cut(s) 487, 994, 1097, 1195, 1218, 1635
BstKTI GATC 7 cut(s) 154, 440, 639, 810, 961, 1057, 1071
BstMAI GTCTC 2 cut(s) 515, 672
BstMBI GATC 7 cut(s) 151, 437, 636, 807, 958, 1054, 1068
BstMWI GCNNNNNNNGC 3 cut(s) 981, 1498, 1598
BstNI CCWGG 1 cut(s) 1481
BstPI GGTNACC 1 cut(s) 1345
BstSCI CCNGG 3 cut(s) 1479, 1603, 1604
BstSFI CTRYAG 2 cut(s) 1470, 1562
BstV1I GCAGC 1 cut(s) 343
BstV2I GAAGAC 3 cut(s) 914, 933, 1566
BstX2I RGATCY 4 cut(s) 151, 437, 958, 1068
BstXI CCANNNNNNTGG 1 cut(s) 552
BstYI RGATCY 4 cut(s) 151, 437, 958, 1068
BsuRI GGCC 2 cut(s) 122, 1019
BtgI CCRYGG 1 cut(s) 1202
BtrI CACGTC 1 cut(s) 1113
BtsCI GGATG 6 cut(s) 487, 994, 1097, 1195, 1218, 1635
BtsIMutI CAGTG 1 cut(s) 613
BveI ACCTGC 1 cut(s) 442
Cac8I GCNNGC 2 cut(s) 973, 1530
CaiI CAGNNNCTG 1 cut(s) 356
Cfr13I GGNCC 3 cut(s) 629, 847, 1289
Cfr9I CCCGGG 1 cut(s) 1604
Csp6I GTAC 5 cut(s) 83, 272, 820, 1303, 1462
CspCI CAANNNNNGTGG 2 cut(s) 1505, 1540
CviQI GTAC 5 cut(s) 83, 272, 820, 1303, 1462
DdeI CTNAG 6 cut(s) 148, 185, 342, 823, 1065, 1158
DpnI GATC 7 cut(s) 153, 439, 638, 809, 960, 1056, 1070
DpnII GATC 7 cut(s) 151, 437, 636, 807, 958, 1054, 1068
DraI TTTAAA 1 cut(s) 1621
EaeI YGGCCR 2 cut(s) 120, 1017
Eam1104I CTCTTC 3 cut(s) 783, 1112, 1245
EarI CTCTTC 3 cut(s) 783, 1112, 1245
Ecl136II GAGCTC 2 cut(s) 346, 1532
Eco130I CCWWGG 1 cut(s) 1516
Eco24I GRGCYC 2 cut(s) 348, 1534
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 3 cut(s) 629, 847, 1289
Eco53kI GAGCTC 2 cut(s) 346, 1532
Eco57I CTGAAG 1 cut(s) 1269
Eco88I CYCGRG 1 cut(s) 1604
Eco91I GGTNACC 1 cut(s) 1345
EcoICRI GAGCTC 2 cut(s) 346, 1532
EcoO65I GGTNACC 1 cut(s) 1345
EcoRII CCWGG 1 cut(s) 1479
EcoRV GATATC 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 1516
EcoT38I GRGCYC 2 cut(s) 348, 1534
ErhI CCWWGG 1 cut(s) 1516
FaqI GGGAC 2 cut(s) 598, 756
FauI CCCGC 1 cut(s) 575
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 2 cut(s) 357, 1629
FokI GGATG 6 cut(s) 494, 1001, 1084, 1202, 1205, 1622
FriOI GRGCYC 2 cut(s) 348, 1534
Fsp4HI GCNGC 2 cut(s) 357, 1629
FspBI CTAG 4 cut(s) 768, 1010, 1139, 1373
GluI GCNGC 2 cut(s) 357, 1629
GsaI CCCAGC 1 cut(s) 743
GsuI CTGGAG 2 cut(s) 677, 955
HaeIII GGCC 2 cut(s) 122, 1019
HapII CCGG 3 cut(s) 600, 622, 1605
HincII GTYRAC 1 cut(s) 1312
HindII GTYRAC 1 cut(s) 1312
HinfI GANTC 5 cut(s) 5, 425, 603, 1452, 1614
HpaII CCGG 3 cut(s) 600, 622, 1605
HphI GGTGA 4 cut(s) 162, 506, 560, 565
Hpy166II GTNNAC 4 cut(s) 46, 83, 1132, 1312
Hpy188I TCNGA 9 cut(s) 295, 343, 697, 812, 826, 988, 1059, 1117, 1159
Hpy188III TCNNGA 2 cut(s) 1080, 1545
Hpy8I GTNNAC 4 cut(s) 46, 83, 1132, 1312
HpyAV CCTTC 5 cut(s) 389, 575, 887, 955, 1223
HpyCH4III ACNGT 6 cut(s) 264, 352, 577, 747, 1077, 1461
HpyCH4IV ACGT 1 cut(s) 1112
HpyCH4V TGCA 6 cut(s) 306, 451, 517, 710, 872, 1379
HpyF10VI GCNNNNNNNGC 3 cut(s) 981, 1498, 1598
HpyF3I CTNAG 6 cut(s) 148, 185, 342, 823, 1065, 1158
HpySE526I ACGT 1 cut(s) 1112
Kzo9I GATC 7 cut(s) 151, 437, 636, 807, 958, 1054, 1068
LmnI GCTCC 2 cut(s) 1606, 1636
Lsp1109I GCAGC 1 cut(s) 343
LweI GCATC 1 cut(s) 762
MaeI CTAG 4 cut(s) 768, 1010, 1139, 1373
MaeII ACGT 1 cut(s) 1112
MaeIII GTNAC 4 cut(s) 197, 371, 664, 1345
MalI GATC 7 cut(s) 153, 439, 638, 809, 960, 1056, 1070
MboI GATC 7 cut(s) 151, 437, 636, 807, 958, 1054, 1068
MboII GAAGA 9 cut(s) 770, 914, 933, 1099, 1262, 1370, 1395, 1461, 1566
MflI RGATCY 4 cut(s) 151, 437, 958, 1068
MhlI GDGCHC 2 cut(s) 348, 1534
MlsI TGGCCA 2 cut(s) 122, 1019
MluCI AATT 8 cut(s) 113, 684, 771, 874, 906, 963, 977, 1431
MluNI TGGCCA 2 cut(s) 122, 1019
MmeI TCCRAC 2 cut(s) 132, 283
Mox20I TGGCCA 2 cut(s) 122, 1019
MroXI GAANNNNTTC 1 cut(s) 1556
MscI TGGCCA 2 cut(s) 122, 1019
MseI TTAA 6 cut(s) 432, 801, 909, 927, 1436, 1620
MslI CAYNNNNRTG 1 cut(s) 419
Msp20I TGGCCA 2 cut(s) 122, 1019
MspA1I CMGCKG 1 cut(s) 655
MspCI CTTAAG 1 cut(s) 431
MspI CCGG 3 cut(s) 600, 622, 1605
MspR9I CCNGG 3 cut(s) 1481, 1605, 1606
Mva1269I GAATGC 2 cut(s) 617, 1379
MvaI CCWGG 1 cut(s) 1481
MwoI GCNNNNNNNGC 3 cut(s) 981, 1498, 1598
NciI CCSGG 2 cut(s) 1605, 1606
NdeII GATC 7 cut(s) 151, 437, 636, 807, 958, 1054, 1068
NlaIV GGNNCC 5 cut(s) 543, 631, 789, 1398, 1632
NmuCI GTSAC 2 cut(s) 371, 664
PctI GAATGC 2 cut(s) 617, 1379
PdmI GAANNNNTTC 1 cut(s) 1556
PfeI GAWTC 4 cut(s) 425, 603, 1452, 1614
PflFI GACNNNGTC 2 cut(s) 369, 589
PflMI CCANNNNNTGG 1 cut(s) 118
PkrI GCNGC 2 cut(s) 358, 1630
PsiI TTATAA 1 cut(s) 905
Psp124BI GAGCTC 2 cut(s) 348, 1534
Psp6I CCWGG 1 cut(s) 1479
PspEI GGTNACC 1 cut(s) 1345
PspFI CCCAGC 1 cut(s) 739
PspGI CCWGG 1 cut(s) 1479
PspN4I GGNNCC 5 cut(s) 543, 631, 789, 1398, 1632
PspPI GGNCC 3 cut(s) 629, 847, 1289
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 4 cut(s) 151, 437, 958, 1068
PsyI GACNNNGTC 2 cut(s) 369, 589
PvuII CAGCTG 1 cut(s) 655
RsaI GTAC 5 cut(s) 84, 273, 821, 1304, 1463
RsaNI GTAC 5 cut(s) 83, 272, 820, 1303, 1462
RseI CAYNNNNRTG 1 cut(s) 419
SacI GAGCTC 2 cut(s) 348, 1534
SaqAI TTAA 6 cut(s) 432, 801, 909, 927, 1436, 1620
SatI GCNGC 2 cut(s) 357, 1629
Sau3AI GATC 7 cut(s) 151, 437, 636, 807, 958, 1054, 1068
Sau96I GGNCC 3 cut(s) 629, 847, 1289
ScaI AGTACT 2 cut(s) 273, 1463
ScrFI CCNGG 3 cut(s) 1481, 1605, 1606
SduI GDGCHC 2 cut(s) 348, 1534
SfaNI GCATC 1 cut(s) 762
SfcI CTRYAG 2 cut(s) 1470, 1562
SinI GGWCC 3 cut(s) 629, 847, 1289
SmaI CCCGGG 1 cut(s) 1606
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 3 cut(s) 202, 393, 431
SmoI CTYRAG 3 cut(s) 202, 393, 431
Sse9I AATT 8 cut(s) 113, 684, 771, 874, 906, 963, 977, 1431
SsiI CCGC 3 cut(s) 145, 582, 1628
SspI AATATT 1 cut(s) 511
SspMI CTAG 4 cut(s) 768, 1010, 1139, 1373
SstI GAGCTC 2 cut(s) 348, 1534
StyD4I CCNGG 3 cut(s) 1479, 1603, 1604
StyI CCWWGG 1 cut(s) 1516
TaaI ACNGT 6 cut(s) 264, 352, 577, 747, 1077, 1461
TaiI ACGT 1 cut(s) 1115
TaqI TCGA 2 cut(s) 403, 1546
TasI AATT 8 cut(s) 113, 684, 771, 874, 906, 963, 977, 1431
TatI WGTACW 3 cut(s) 271, 819, 1461
TauI GCSGC 1 cut(s) 1631
TfiI GAWTC 4 cut(s) 425, 603, 1452, 1614
Tru1I TTAA 6 cut(s) 432, 801, 909, 927, 1436, 1620
Tru9I TTAA 6 cut(s) 432, 801, 909, 927, 1436, 1620
TscAI CASTG 1 cut(s) 613
TseFI GTSAC 2 cut(s) 371, 664
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 2 cut(s) 371, 664
TspDTI ATGAA 5 cut(s) 61, 446, 867, 1139, 1371
TspMI CCCGGG 1 cut(s) 1604
TspRI CASTG 1 cut(s) 613
Tth111I GACNNNGTC 2 cut(s) 369, 589
Van91I CCANNNNNTGG 1 cut(s) 118
Vha464I CTTAAG 1 cut(s) 431
VpaK11BI GGWCC 3 cut(s) 629, 847, 1289
XapI RAATTY 3 cut(s) 771, 874, 1431
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
XmaI CCCGGG 1 cut(s) 1604
XmiI GTMKAC 1 cut(s) 45
XmnI GAANNNNTTC 1 cut(s) 1556
XspI CTAG 4 cut(s) 768, 1010, 1139, 1373
ZrmI AGTACT 2 cut(s) 273, 1463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.