Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012819

Physical Location & Seq

Genomic Coordinates Forward (+)

9048052 .. 9050809

Gene Structure 2758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G052300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

ATGGGTTCGCCTATGTACGGCTTCCACAACCAAAACAACATTCTCTACCTCAAACTTTTCTTCATCTTATTATTCTTGGGCTGCATACCAGATAGAACAACCAACCTTCCTTCCAATCAACTCCTTGCCACACCAACAAGTTCAGCTAACTCTCTTAATCTTACTTCAGCTTTGGAGACACTAAGCCTAGATGGTTACTTTACTTTTAAAAACAACCATCATGCAGCAAAGGACTTTGGCAACACATTTCAATCCCTCCCATTAGCAGTCCTGCATCCAAAATCAGTTTCTGATATCTCCTCCACAATAAAACTTATATTTGAACTGGGTTCTGCTTCAGAGCTTACAGTTGCTGCCAGAGGCCATGGCCACTCTCTTCAAGGTCAAGCTCAAACCCATGGAGGTCTGGTCATCAACATGGAGTCACTCAAGGCACAACAAATGCAGGTTCACATTGGAGAGCAGCCTTATGTGGATGTTTCAGGTGGTGAGCTGTGGATAAATATTCTGCATGAGACTCTTAAATATGGGTTGTCACCAAAATCTTGGACTGATTACCTTCACCTCACCGTCGGCGGGACTTTATCATACGCCGGGATCAGCGGTCAGGCTTTCCGGCACGGGCCACAAATCAATAACGTCTACCAGCTGGAGGTTGTCACAGGACAAGGAGAAGTAATTACCTGTTCAGAGAACAAAAGTCCAGACCTTTTTTATGGTGTCCTTGGAGGGCTTGGACAGTTTGGCATCATCACACAGGCCAGAATTTCTCTTGAACCAGCACCAAAGATGGTGAAATGGATCAGAGTGTTGTATTCAGACTTCTCATCATTTACCAAGGACCAAGAGTTTCTCATATCATCTGAAAATTCATTTGACTATATTGAAGGATTTGTCATAATTAATAGAACAGGTCTTCTTAATAACTGGAGATCTTCCTTCAATCCTAAAGATCCAATGCAAGCCAGCAAATTCAATTCAGATGGAAGAACACTCTACTGCCTAGAAATGGCCAAATACTTTAACCCCAATGAAACTGATGTCATGGATCAGAGAACTGAAAGCTTACTGTTACTTTTGCATTACATCCCATCCACCCTCTTCCTGTCTGAAGTTTCCTATGTCGAATTCCTAGATAGAGTGCATTTGTCCGAGATAAAACTCCGAACGAAAGGATTATGGGAAGTTCCCCACCCGTGGATGAACCTTCTCATCCCTAAAAGCAAGATACATGACTTTGCTGATGAGATCTTTGGCAACATTCTCACAGACAATATCAATGGTCCTATCCTTATGTACCCTGTCAACAAAACCAAGTGGAACAACAACACATCTTTGGTTACCCCAGATGAAGATGTCTTCTACTTAGTGGCATTCCTATCCTCTGCAGTGCCATCTTCCACAGGAACAGATGGCCTAGATCAAATTTTAACACAAAACACAAGAATTCTGGAGTATTGTGATAGAGCCCAGCTTGGTATCAAGCAATATCTACCCTATTACAGAACCCAACAAGAGTGGAAAGCTCATTTCGGCCCTCGATGGCAAGCTTTCATACAGAGGAAGTCTTCTTATGACCCTTTGGCAATCCTTGCCCCCGGGCAGAGGATCTTCCAGAAGGCAATACCCATCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009308 GO:0009690 GO:0009823 GO:0009888 GO:0009987 GO:0010817 GO:0016491 GO:0016645 GO:0019139 GO:0032502 GO:0034754 GO:0042445 GO:0042447 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048507 GO:0048856 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 map00908

Pfam Domains

Protein Families

Cytokin-bind FAD_binding_4

Protein Analysis

546

Amino Acids

61.3

Weight (kDa)

6.15

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41510 AT2G41510 AT2G41510
fragaria_vesca	FvH4_6g24620
malus_domestica	MD12G1083600.v1.1 MD14G1078600.v1.1
prunus_persica	Prupe.7G052300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0483951
rosa_laevigata	RLG00000023246
rosa_multiflora	Rmu_sc0003477.1_g000016
rosa_roxburghii	Rroxscaffold_6G00397930
rosa_rugosa	Rorug03G0209600 Rorug03G0209700
rosa_samantha	Rh3AG257900 Rh3BG295000 Rh3CG292400 Rh3DG288000
rosa_wichuraiana	Rw3G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	642
AciI	CCGC	2 cut(s)	576, 603
AclWI	GGATC	5 cut(s)	605, 809, 947, 1056, 1616
AcoI	YGGCCR	2 cut(s)	367, 1011
AcsI	RAATTY	6 cut(s)	765, 868, 971, 1127, 1425, 1446
AcuI	CTGAAG	3 cut(s)	150, 321, 1131
AfaI	GTAC	2 cut(s)	17, 1298
AfiI	CCNNNNNNNGG	6 cut(s)	17, 576, 652, 1009, 1197, 1605
AgsI	TTSAA	7 cut(s)	251, 323, 380, 776, 887, 943, 976
AjuI	GAANNNNNNNTTGG	4 cut(s)	24, 56, 271, 303
Alw26I	GTCTC	2 cut(s)	170, 509
AlwI	GGATC	5 cut(s)	605, 809, 947, 1056, 1616
AlwNI	CAGNNNCTG	2 cut(s)	290, 353
Ama87I	CYCGRG	1 cut(s)	1598
AoxI	GGCC	7 cut(s)	361, 367, 623, 759, 1011, 1414, 1534
ApeKI	GCWGC	4 cut(s)	81, 224, 353, 463
ApoI	RAATTY	6 cut(s)	765, 868, 971, 1127, 1425, 1446
AseI	ATTAAT	1 cut(s)	903
AspS9I	GGNCC	4 cut(s)	623, 841, 1283, 1535
AsuC2I	CCSGG	3 cut(s)	595, 1599, 1600
AsuHPI	GGTGA	5 cut(s)	500, 528, 554, 559, 805
AvaI	CYCGRG	1 cut(s)	1598
AvaII	GGWCC	2 cut(s)	841, 1283
BalI	TGGCCA	2 cut(s)	369, 1013
BanII	GRGCYC	1 cut(s)	1471
BarI	GAAGNNNNNNTAC	2 cut(s)	806, 838
BbsI	GAAGAC	3 cut(s)	908, 1351, 1560
BbvI	GCAGC	4 cut(s)	68, 236, 340, 475
BccI	CCATC	9 cut(s)	185, 225, 784, 977, 1099, 1402, 1406, 1536, 1637
BceAI	ACGGC	1 cut(s)	34
BcnI	CCSGG	3 cut(s)	595, 1599, 1600
BcoDI	GTCTC	2 cut(s)	170, 509
BfaI	CTAG	4 cut(s)	188, 1004, 1133, 1418
BfmI	CTRYAG	1 cut(s)	1386
BfuAI	ACCTGC	1 cut(s)	436
BglII	AGATCT	2 cut(s)	932, 1248
BisI	GCNGC	4 cut(s)	82, 225, 354, 464
BlsI	GCNGC	4 cut(s)	83, 226, 355, 465
Bme1390I	CCNGG	3 cut(s)	595, 1599, 1600
Bme18I	GGWCC	2 cut(s)	841, 1283
BmeT110I	CYCGRG	1 cut(s)	1598
BmgT120I	GGNCC	4 cut(s)	623, 841, 1283, 1535
BmrFI	CCNGG	3 cut(s)	595, 1599, 1600
BmrI	ACTGGG	1 cut(s)	335
BmsI	GCATC	2 cut(s)	283, 756
BmuI	ACTGGG	1 cut(s)	335
BpiI	GAAGAC	3 cut(s)	908, 1351, 1560
BpmI	CTGGAG	3 cut(s)	671, 949, 1472
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	3 cut(s)	595, 1599, 1600
BsaJI	CCNNGG	7 cut(s)	364, 397, 724, 837, 1196, 1597, 1598
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	6 cut(s)	17, 576, 652, 1009, 1197, 1605
Bse1I	ACTGG	2 cut(s)	330, 932
BseDI	CCNNGG	7 cut(s)	364, 397, 724, 837, 1196, 1597, 1598
BseGI	GGATG	6 cut(s)	274, 481, 1086, 1091, 1206, 1212
BseLI	CCNNNNNNNGG	6 cut(s)	17, 576, 652, 1009, 1197, 1605
BseNI	ACTGG	2 cut(s)	330, 932
BseRI	GAGGAG	1 cut(s)	289
BseXI	GCAGC	4 cut(s)	68, 236, 340, 475
BseYI	CCCAGC	1 cut(s)	1470
BshFI	GGCC	7 cut(s)	363, 369, 625, 761, 1013, 1416, 1536
BsiHKCI	CYCGRG	1 cut(s)	1598
BsiSI	CCGG	3 cut(s)	594, 616, 1599
BslFI	GGGAC	1 cut(s)	592
BslI	CCNNNNNNNGG	6 cut(s)	17, 576, 652, 1009, 1197, 1605
BsmAI	GTCTC	2 cut(s)	170, 509
BsmFI	GGGAC	1 cut(s)	592
BsmI	GAATGC	1 cut(s)	1373
BsnI	GGCC	7 cut(s)	363, 369, 625, 761, 1013, 1416, 1536
BsoBI	CYCGRG	1 cut(s)	1598
Bsp1286I	GDGCHC	1 cut(s)	1471
Bsp143I	GATC	8 cut(s)	597, 801, 932, 952, 1048, 1248, 1420, 1608
Bsp19I	CCATGG	2 cut(s)	364, 397
BspACI	CCGC	2 cut(s)	576, 603
BspANI	GGCC	7 cut(s)	363, 369, 625, 761, 1013, 1416, 1536
BspMAI	CTGCAG	1 cut(s)	1390
BspMI	ACCTGC	1 cut(s)	436
BspPI	GGATC	5 cut(s)	605, 809, 947, 1056, 1616
BsrI	ACTGG	2 cut(s)	330, 932
BssECI	CCNNGG	7 cut(s)	364, 397, 724, 837, 1196, 1597, 1598
BssMI	GATC	8 cut(s)	597, 801, 932, 952, 1048, 1248, 1420, 1608
BssT1I	CCWWGG	4 cut(s)	364, 397, 724, 837
Bst4CI	ACNGT	4 cut(s)	349, 571, 741, 1071
Bst6I	CTCTTC	2 cut(s)	381, 1106
BstAPI	GCANNNNNTGC	1 cut(s)	1592
BstC8I	GCNNGC	3 cut(s)	963, 967, 1548
BstDEI	CTNAG	2 cut(s)	182, 1366
BstDSI	CCRYGG	3 cut(s)	364, 397, 1196
BstEII	GGTNACC	1 cut(s)	1339
BstF5I	GGATG	6 cut(s)	274, 481, 1086, 1091, 1206, 1212
BstKTI	GATC	8 cut(s)	600, 804, 935, 955, 1051, 1251, 1423, 1611
BstMAI	GTCTC	2 cut(s)	170, 509
BstMBI	GATC	8 cut(s)	597, 801, 932, 952, 1048, 1248, 1420, 1608
BstMWI	GCNNNNNNNGC	1 cut(s)	1592
BstPI	GGTNACC	1 cut(s)	1339
BstSCI	CCNGG	3 cut(s)	593, 1597, 1598
BstSFI	CTRYAG	1 cut(s)	1386
BstV1I	GCAGC	4 cut(s)	68, 236, 340, 475
BstV2I	GAAGAC	3 cut(s)	908, 1351, 1560
BstX2I	RGATCY	4 cut(s)	932, 952, 1248, 1608
BstXI	CCANNNNNNTGG	1 cut(s)	546
BstYI	RGATCY	4 cut(s)	932, 952, 1248, 1608
BsuRI	GGCC	7 cut(s)	363, 369, 625, 761, 1013, 1416, 1536
BtgI	CCRYGG	3 cut(s)	364, 397, 1196
BtsCI	GGATG	6 cut(s)	274, 481, 1086, 1091, 1206, 1212
BtsI	GCAGTG	1 cut(s)	1395
BtsIMutI	CAGTG	1 cut(s)	1395
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	3 cut(s)	963, 967, 1548
CaiI	CAGNNNCTG	2 cut(s)	290, 353
Cfr13I	GGNCC	4 cut(s)	623, 841, 1283, 1535
Cfr9I	CCCGGG	1 cut(s)	1598
Csp6I	GTAC	2 cut(s)	16, 1297
CspCI	CAANNNNNGTGG	2 cut(s)	1499, 1534
CviAII	CATG	7 cut(s)	221, 365, 398, 418, 512, 1045, 1232
CviQI	GTAC	2 cut(s)	16, 1297
DdeI	CTNAG	2 cut(s)	182, 1366
DpnI	GATC	8 cut(s)	599, 803, 934, 954, 1050, 1250, 1422, 1610
DpnII	GATC	8 cut(s)	597, 801, 932, 952, 1048, 1248, 1420, 1608
DraI	TTTAAA	1 cut(s)	208
EaeI	YGGCCR	2 cut(s)	367, 1011
Eam1104I	CTCTTC	2 cut(s)	381, 1106
EarI	CTCTTC	2 cut(s)	381, 1106
Eco130I	CCWWGG	4 cut(s)	364, 397, 724, 837
Eco24I	GRGCYC	1 cut(s)	1471
Eco32I	GATATC	1 cut(s)	295
Eco47I	GGWCC	2 cut(s)	841, 1283
Eco57I	CTGAAG	3 cut(s)	150, 321, 1131
Eco88I	CYCGRG	1 cut(s)	1598
Eco91I	GGTNACC	1 cut(s)	1339
EcoO65I	GGTNACC	1 cut(s)	1339
EcoRI	GAATTC	2 cut(s)	1127, 1446
EcoRV	GATATC	1 cut(s)	295
EcoT14I	CCWWGG	4 cut(s)	364, 397, 724, 837
EcoT38I	GRGCYC	1 cut(s)	1471
ErhI	CCWWGG	4 cut(s)	364, 397, 724, 837
FaeI	CATG	7 cut(s)	224, 368, 401, 421, 515, 1048, 1235
FaqI	GGGAC	1 cut(s)	592
FatI	CATG	7 cut(s)	220, 364, 397, 417, 511, 1044, 1231
FauI	CCCGC	1 cut(s)	569
FblI	GTMKAC	1 cut(s)	642
Fnu4HI	GCNGC	4 cut(s)	82, 225, 354, 464
FokI	GGATG	6 cut(s)	261, 488, 1073, 1078, 1199, 1213
FriOI	GRGCYC	1 cut(s)	1471
Fsp4HI	GCNGC	4 cut(s)	82, 225, 354, 464
FspBI	CTAG	4 cut(s)	188, 1004, 1133, 1418
GluI	GCNGC	4 cut(s)	82, 225, 354, 464
GsaI	CCCAGC	1 cut(s)	1474
GsuI	CTGGAG	3 cut(s)	671, 949, 1472
HaeIII	GGCC	7 cut(s)	363, 369, 625, 761, 1013, 1416, 1536
HapII	CCGG	3 cut(s)	594, 616, 1599
Hin1II	CATG	7 cut(s)	224, 368, 401, 421, 515, 1048, 1235
HincII	GTYRAC	1 cut(s)	1306
HindII	GTYRAC	1 cut(s)	1306
HindIII	AAGCTT	2 cut(s)	1063, 1548
HinfI	GANTC	2 cut(s)	422, 517
HpaII	CCGG	3 cut(s)	594, 616, 1599
HphI	GGTGA	5 cut(s)	500, 528, 554, 559, 805
Hpy166II	GTNNAC	3 cut(s)	451, 643, 1306
Hpy188III	TCNNGA	4 cut(s)	704, 773, 1451, 1615
Hpy8I	GTNNAC	3 cut(s)	451, 643, 1306
Hpy99I	CGWCG	1 cut(s)	575
HpyAV	CCTTC	7 cut(s)	116, 120, 569, 881, 949, 1217, 1612
HpyCH4III	ACNGT	4 cut(s)	349, 571, 741, 1071
HpyCH4IV	ACGT	1 cut(s)	639
HpyCH4V	TGCA	9 cut(s)	84, 224, 274, 445, 511, 961, 1081, 1144, 1388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1592
HpyF3I	CTNAG	2 cut(s)	182, 1366
HpySE526I	ACGT	1 cut(s)	639
Hsp92II	CATG	7 cut(s)	224, 368, 401, 421, 515, 1048, 1235
Kzo9I	GATC	8 cut(s)	597, 801, 932, 952, 1048, 1248, 1420, 1608
Lsp1109I	GCAGC	4 cut(s)	68, 236, 340, 475
LweI	GCATC	2 cut(s)	283, 756
MaeI	CTAG	4 cut(s)	188, 1004, 1133, 1418
MaeII	ACGT	1 cut(s)	639
MaeIII	GTNAC	6 cut(s)	194, 423, 534, 658, 1071, 1339
MalI	GATC	8 cut(s)	599, 803, 934, 954, 1050, 1250, 1422, 1610
MboI	GATC	8 cut(s)	597, 801, 932, 952, 1048, 1248, 1420, 1608
MflI	RGATCY	4 cut(s)	932, 952, 1248, 1608
MhlI	GDGCHC	1 cut(s)	1471
MlsI	TGGCCA	2 cut(s)	369, 1013
MluCI	AATT	9 cut(s)	678, 765, 868, 900, 971, 976, 1127, 1425, 1446
MluNI	TGGCCA	2 cut(s)	369, 1013
MlyI	GAGTC	2 cut(s)	431, 511
Mox20I	TGGCCA	2 cut(s)	369, 1013
MscI	TGGCCA	2 cut(s)	369, 1013
MseI	TTAA	7 cut(s)	156, 207, 522, 903, 921, 1023, 1430
MslI	CAYNNNNRTG	1 cut(s)	416
Msp20I	TGGCCA	2 cut(s)	369, 1013
MspA1I	CMGCKG	2 cut(s)	603, 649
MspI	CCGG	3 cut(s)	594, 616, 1599
MspR9I	CCNGG	3 cut(s)	595, 1599, 1600
Mva1269I	GAATGC	1 cut(s)	1373
MwoI	GCNNNNNNNGC	1 cut(s)	1592
NciI	CCSGG	3 cut(s)	595, 1599, 1600
NcoI	CCATGG	2 cut(s)	364, 397
NdeII	GATC	8 cut(s)	597, 801, 932, 952, 1048, 1248, 1420, 1608
NlaIII	CATG	7 cut(s)	224, 368, 401, 421, 515, 1048, 1235
NmuCI	GTSAC	3 cut(s)	423, 534, 658
PctI	GAATGC	1 cut(s)	1373
PkrI	GCNGC	4 cut(s)	83, 226, 355, 465
PleI	GAGTC	2 cut(s)	430, 511
PpsI	GAGTC	2 cut(s)	430, 511
PshBI	ATTAAT	1 cut(s)	903
PspEI	GGTNACC	1 cut(s)	1339
PspFI	CCCAGC	1 cut(s)	1470
PspPI	GGNCC	4 cut(s)	623, 841, 1283, 1535
PstI	CTGCAG	1 cut(s)	1390
PstNI	CAGNNNCTG	2 cut(s)	290, 353
PsuI	RGATCY	4 cut(s)	932, 952, 1248, 1608
PvuII	CAGCTG	1 cut(s)	649
RsaI	GTAC	2 cut(s)	17, 1298
RsaNI	GTAC	2 cut(s)	16, 1297
RseI	CAYNNNNRTG	1 cut(s)	416
SaqAI	TTAA	7 cut(s)	156, 207, 522, 903, 921, 1023, 1430
SatI	GCNGC	4 cut(s)	82, 225, 354, 464
Sau3AI	GATC	8 cut(s)	597, 801, 932, 952, 1048, 1248, 1420, 1608
Sau96I	GGNCC	4 cut(s)	623, 841, 1283, 1535
SchI	GAGTC	2 cut(s)	431, 511
ScrFI	CCNGG	3 cut(s)	595, 1599, 1600
SduI	GDGCHC	1 cut(s)	1471
SfaNI	GCATC	2 cut(s)	283, 756
SfcI	CTRYAG	1 cut(s)	1386
SinI	GGWCC	2 cut(s)	841, 1283
SmaI	CCCGGG	1 cut(s)	1600
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	9 cut(s)	678, 765, 868, 900, 971, 976, 1127, 1425, 1446
SsiI	CCGC	2 cut(s)	576, 603
SspI	AATATT	1 cut(s)	505
SspMI	CTAG	4 cut(s)	188, 1004, 1133, 1418
StyD4I	CCNGG	3 cut(s)	593, 1597, 1598
StyI	CCWWGG	4 cut(s)	364, 397, 724, 837
TaaI	ACNGT	4 cut(s)	349, 571, 741, 1071
TaiI	ACGT	1 cut(s)	642
TaqI	TCGA	2 cut(s)	1125, 1540
TasI	AATT	9 cut(s)	678, 765, 868, 900, 971, 976, 1127, 1425, 1446
Tru1I	TTAA	7 cut(s)	156, 207, 522, 903, 921, 1023, 1430
Tru9I	TTAA	7 cut(s)	156, 207, 522, 903, 921, 1023, 1430
TscAI	CASTG	1 cut(s)	1395
TseFI	GTSAC	3 cut(s)	423, 534, 658
TseI	GCWGC	4 cut(s)	81, 224, 353, 463
Tsp45I	GTSAC	3 cut(s)	423, 534, 658
TspDTI	ATGAA	6 cut(s)	52, 861, 1047, 1217, 1365, 1543
TspMI	CCCGGG	1 cut(s)	1598
TspRI	CASTG	1 cut(s)	1395
VpaK11BI	GGWCC	2 cut(s)	841, 1283
VspI	ATTAAT	1 cut(s)	903
XapI	RAATTY	6 cut(s)	765, 868, 971, 1127, 1425, 1446
XmaI	CCCGGG	1 cut(s)	1598
XmiI	GTMKAC	1 cut(s)	642
XspI	CTAG	4 cut(s)	188, 1004, 1133, 1418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.