FvH4_6g25080

Methyltransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
19008280 .. 19014368
6089 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25080.t1

Sequence Viewer

Length: 1785 bp
ATGGGAGGAGGTTCAGCTTTTAAATTAGAGTCATGGCAGATGATAACCTTAGCTCTCCTATTAATGCTTGGGTCCTTCTATGCTGGAACTCTCTTTCGCCAAAATGCTCCCAATTACTTCTCGCAGCTCAGCAACAATTTCTCATTTCCTGGTACTTCCTCGTTTGCGAACAAAGTCGAATTAACATATAGAAGAACACCACTCGTGATACCAGAGACTGGTGTGGATGTTTGTCCCTCGAGTTTCAATGAATATATCCCTTGCCATAATGTATCATACATACAAACTTTGCTCCCCAGTTTGGACACTAGTAGAAGAGAAGAACTAGAGAGACACTGCCCTCCAGTTCAACAGCGCTTGTTTTGCTTGGTTCCTCCACCCAGAGATTATAAGATTCCTATAAGATGGCCAATCAGCAGGGACTATGTGTGGCGAAGCAATGTGAACCATACTCATCTTGCTGAAGTCAAAGGAGGACAGAATTGGGTTCATGAGAAGGATCAACTCTGGTGGTTCCCCGGTGGTGGTACCCATTTTAAACATGGTGCACCTGAATACATTCAGAGATTGGGAAATATGATAACCAATGATTCAGGTGATCTGCGTACTGCAGGGGTTGTTCAAGTTTTGGATGTTGGTTGTGGGGTTTCCAGCTTTTCTGCTTTCCTTCTTCCCTTGGGTGTACAGACCATGTCCTTTGCTCCCAAGGATGGACATGAGAATCAAATTCAGTTTTCTCTAGAGCGTGGCATTGGTGCAATGATCTCGGCAATAGCAACAAAGCAGTTGCCATATCCCAGTAGCTCGTTTGAGATGGTTCATTGTTCTAGGTGTCGTGTTGATTGGCATGAAAATGATGGTATTCTTCTAAAAGAAGTGGATCGCCTTCTGCGTTCTAATGGGTACTTCGTCTATTCAGCACCACCTGCTTATAGAAAGGATAAAGACTTTCCAATAATTTGGGAGAAGTTAGTGAATCTGACTTCGGCAATGTGTTGGAAACTCATTGCTAAAAGAGTTCAGACTGCTATTTGGATGAAACAAGAAGATCCAGCATGCCTTCAGCGCATTTCTGAACAGAAGCTTATAGATATATGTGATGCTGCTGATGATTCTAAGTCATTCTGGAATACAAAACTGGGAAATTGTATACAAGTAAGGGGCATGCAAACAAATGCTCCAAAACTCCCTTCTAAACCAGATCGTCTATCAATATACTCGGAGAGTCTTAAAAAAATTGGTATTAGTCAAGAGGAATTTACTTCGGAGACTGTCTTTTGGCAAGATCAAGTTCAGCATTACTGGTGGCTGCTGAATGTGAACAAGACAGAAATACGAAATGTCATGGACATGAATGCTTTTTGTGGTGGATTTGCTGTGGCCTTAGATTCATCACCGATGTGGGTGATGAATATAGTTCCTGCAACCATGAAGAATACATTGTCTGCCATTTATGACCGTGGTCTGATTGGTGCTTTCCATGATTGGTGTGAACCATTTTCTACTTATCCACGCACATATGATCTATTGCATGCCAACTTCCTCTTCTCTCATTATAAGGAATGTGGAGAAGGCTGCTTGTTGGAGGATATCCTGTTGGAAATGGACAGGATGATAAGACCGCAGGGATTTATTATCATTAGAGATGAGGATGCTATTACATCAACGATCAAGGATCTTGCTCCAAAATTTTTGTGGGAGGTTGAATCACATGTGCTGGACAACATAAAGAAGAACAGTGAAACCGTATTAATTTGTAGGAAGAAGTTTTGGGCAATTGTCTGA

Protein Analysis

595

Amino Acids

67.89

Weight (kDa)

6.58

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_29 PF03141 84 - 588 3.3e-201 Putative S-adenosyl-L-methionine-dependent methyltransferase
Methyltransf_11 PF08241 210 - 304 3.4e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0010935)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 390, 1557
AarI CACCTGC 1 cut(s) 934
Acc36I ACCTGC 1 cut(s) 934
Acc65I GGTACC 1 cut(s) 527
AccB1I GGYRCC 1 cut(s) 527
AccB7I CCANNNNNTGG 1 cut(s) 218
AccI GTMKAC 1 cut(s) 1150
AciI CCGC 1 cut(s) 1622
AclWI GGATC 4 cut(s) 507, 888, 1043, 1683
AcoI YGGCCR 1 cut(s) 407
AcsI RAATTY 3 cut(s) 726, 1256, 1688
AcuI CTGAAG 2 cut(s) 483, 1046
AfaI GTAC 5 cut(s) 154, 529, 607, 684, 905
AfeI AGCGCT 1 cut(s) 356
AfiI CCNNNNNNNGG 4 cut(s) 218, 301, 524, 710
AflIII ACRYGT 1 cut(s) 1711
AgsI TTSAA 4 cut(s) 247, 350, 623, 1706
AhlI ACTAGT 1 cut(s) 308
AjnI CCWGG 1 cut(s) 148
AjuI GAANNNNNNNTTGG 4 cut(s) 1174, 1206, 1529, 1561
AleI CACNNNNGTG 1 cut(s) 1399
AluBI AGCT 6 cut(s) 17, 53, 127, 654, 804, 1084
AluI AGCT 6 cut(s) 17, 53, 127, 654, 804, 1084
Alw21I GWGCWC 1 cut(s) 550
Alw26I GTCTC 3 cut(s) 209, 325, 1262
Alw44I GTGCAC 1 cut(s) 546
AlwI GGATC 4 cut(s) 507, 888, 1043, 1683
AlwNI CAGNNNCTG 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 238
Aor51HI AGCGCT 1 cut(s) 356
AoxI GGCC 2 cut(s) 407, 1380
ApaLI GTGCAC 1 cut(s) 546
ApeKI GCWGC 4 cut(s) 124, 1103, 1309, 1575
ApoI RAATTY 3 cut(s) 726, 1256, 1688
AseI ATTAAT 2 cut(s) 62, 1751
Asp700I GAANNNNTTC 1 cut(s) 558
Asp718I GGTACC 1 cut(s) 527
AspLEI GCGC 2 cut(s) 357, 1068
AspS9I GGNCC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 519
AsuHPI GGTGA 3 cut(s) 608, 1386, 1417
AvaI CYCGRG 1 cut(s) 238
AvaII GGWCC 1 cut(s) 72
BaeGI GKGCMC 1 cut(s) 550
BalI TGGCCA 1 cut(s) 409
BanI GGYRCC 1 cut(s) 527
BauI CACGAG 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 550
BbvI GCAGC 4 cut(s) 136, 1090, 1296, 1562
BccI CCATC 4 cut(s) 399, 704, 808, 851
BcgI CGANNNNNNTGC 2 cut(s) 747, 781
BciT130I CCWGG 1 cut(s) 150
BcnI CCSGG 1 cut(s) 519
BcoDI GTCTC 3 cut(s) 209, 325, 1262
BcuI ACTAGT 1 cut(s) 308
BfaI CTAG 4 cut(s) 309, 326, 740, 828
BfmI CTRYAG 1 cut(s) 609
BfoI RGCGCY 1 cut(s) 358
BfuAI ACCTGC 1 cut(s) 934
BisI GCNGC 4 cut(s) 125, 1104, 1310, 1576
BlpI GCTNAGC 1 cut(s) 128
BlsI GCNGC 4 cut(s) 126, 1105, 1311, 1577
Bme1390I CCNGG 2 cut(s) 150, 519
Bme18I GGWCC 1 cut(s) 72
BmeT110I CYCGRG 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 4 cut(s) 73, 372, 515, 529
BmrFI CCNGG 2 cut(s) 150, 519
BmrI ACTGGG 3 cut(s) 291, 792, 1148
BmsI GCATC 2 cut(s) 1090, 1642
BmuI ACTGGG 3 cut(s) 291, 792, 1148
BoxI GACNNNNGTC 1 cut(s) 1461
BpmI CTGGAG 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 49
Bpu1102I GCTNAGC 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 519
BsaJI CCNNGG 4 cut(s) 517, 675, 705, 1459
BsaXI ACNNNNNCTCC 2 cut(s) 1162, 1192
Bsc4I CCNNNNNNNGG 4 cut(s) 218, 301, 524, 710
Bse1I ACTGG 6 cut(s) 223, 297, 344, 798, 1143, 1307
Bse3DI GCAATG 4 cut(s) 445, 765, 996, 1005
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 4 cut(s) 517, 675, 705, 1459
BseGI GGATG 6 cut(s) 232, 637, 715, 1041, 1617, 1657
BseLI CCNNNNNNNGG 4 cut(s) 218, 301, 524, 710
BseMI GCAATG 4 cut(s) 445, 765, 996, 1005
BseMII CTCAG 1 cut(s) 142
BseNI ACTGG 6 cut(s) 223, 297, 344, 798, 1143, 1307
BseRI GAGGAG 1 cut(s) 21
BseSI GKGCMC 1 cut(s) 550
BseXI GCAGC 4 cut(s) 136, 1090, 1296, 1562
BshFI GGCC 2 cut(s) 409, 1382
BshNI GGYRCC 1 cut(s) 527
BsiHKAI GWGCWC 1 cut(s) 550
BsiHKCI CYCGRG 1 cut(s) 238
BsiSI CCGG 1 cut(s) 519
BslFI GGGAC 2 cut(s) 219, 434
BslI CCNNNNNNNGG 4 cut(s) 218, 301, 524, 710
BsmAI GTCTC 3 cut(s) 209, 325, 1262
BsmFI GGGAC 2 cut(s) 219, 434
BsmI GAATGC 1 cut(s) 1360
BsnI GGCC 2 cut(s) 409, 1382
BsoBI CYCGRG 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 550
Bsp1407I TGTACA 1 cut(s) 682
Bsp1720I GCTNAGC 1 cut(s) 128
BspACI CCGC 1 cut(s) 1622
BspANI GGCC 2 cut(s) 409, 1382
BspCNI CTCAG 1 cut(s) 141
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 4 cut(s) 73, 372, 515, 529
BspMAI CTGCAG 1 cut(s) 613
BspMI ACCTGC 1 cut(s) 934
BspPI GGATC 4 cut(s) 507, 888, 1043, 1683
BspT107I GGYRCC 1 cut(s) 527
BsrDI GCAATG 4 cut(s) 445, 765, 996, 1005
BsrGI TGTACA 1 cut(s) 682
BsrI ACTGG 6 cut(s) 223, 297, 344, 798, 1143, 1307
BssECI CCNNGG 4 cut(s) 517, 675, 705, 1459
BssNAI GTATAC 1 cut(s) 1151
BssSI CACGAG 1 cut(s) 203
BssT1I CCWWGG 2 cut(s) 675, 705
Bst1107I GTATAC 1 cut(s) 1151
Bst2BI CACGAG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 4 cut(s) 1273, 1460, 1739, 1747
Bst6I CTCTTC 2 cut(s) 310, 1550
BstAPI GCANNNNNTGC 1 cut(s) 926
BstAUI TGTACA 1 cut(s) 682
BstC8I GCNNGC 3 cut(s) 1057, 1166, 1533
BstDEI CTNAG 4 cut(s) 49, 128, 1116, 1384
BstDSI CCRYGG 1 cut(s) 1459
BstF5I GGATG 6 cut(s) 232, 637, 715, 1041, 1617, 1657
BstH2I RGCGCY 1 cut(s) 358
BstHHI GCGC 2 cut(s) 357, 1068
BstMAI GTCTC 3 cut(s) 209, 325, 1262
BstMWI GCNNNNNNNGC 3 cut(s) 363, 926, 1065
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 4 cut(s) 1059, 1168, 1535, 1715
BstPAI GACNNNNGTC 1 cut(s) 1461
BstSCI CCNGG 2 cut(s) 148, 517
BstSFI CTRYAG 1 cut(s) 609
BstSLI GKGCMC 1 cut(s) 550
BstV1I GCAGC 4 cut(s) 136, 1090, 1296, 1562
BstX2I RGATCY 2 cut(s) 1048, 1675
BstXI CCANNNNNNTGG 1 cut(s) 960
BstYI RGATCY 2 cut(s) 1048, 1675
BstZ17I GTATAC 1 cut(s) 1151
BsuRI GGCC 2 cut(s) 409, 1382
BtgI CCRYGG 1 cut(s) 1459
BtsCI GGATG 6 cut(s) 232, 637, 715, 1041, 1617, 1657
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 2 cut(s) 334, 1744
BveI ACCTGC 1 cut(s) 934
Cac8I GCNNGC 3 cut(s) 1057, 1166, 1533
CaiI CAGNNNCTG 1 cut(s) 218
CciI TCATGA 1 cut(s) 490
CfoI GCGC 2 cut(s) 357, 1068
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 5 cut(s) 153, 528, 606, 683, 904
CspCI CAANNNNNGTGG 2 cut(s) 491, 526
CviQI GTAC 5 cut(s) 153, 528, 606, 683, 904
DdeI CTNAG 4 cut(s) 49, 128, 1116, 1384
DraI TTTAAA 2 cut(s) 22, 538
EaeI YGGCCR 1 cut(s) 407
Eam1104I CTCTTC 2 cut(s) 310, 1550
EarI CTCTTC 2 cut(s) 310, 1550
Eco130I CCWWGG 2 cut(s) 675, 705
Eco32I GATATC 1 cut(s) 1591
Eco47I GGWCC 1 cut(s) 72
Eco47III AGCGCT 1 cut(s) 356
Eco57I CTGAAG 2 cut(s) 483, 1046
Eco88I CYCGRG 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 148
EcoRV GATATC 1 cut(s) 1591
EcoT14I CCWWGG 2 cut(s) 675, 705
ErhI CCWWGG 2 cut(s) 675, 705
FaqI GGGAC 2 cut(s) 219, 434
FauNDI CATATG 1 cut(s) 1519
FblI GTMKAC 1 cut(s) 1150
Fnu4HI GCNGC 4 cut(s) 125, 1104, 1310, 1576
FokI GGATG 6 cut(s) 239, 644, 722, 1048, 1624, 1664
Fsp4HI GCNGC 4 cut(s) 125, 1104, 1310, 1576
FspBI CTAG 4 cut(s) 309, 326, 740, 828
GlaI GCGC 2 cut(s) 356, 1067
GluI GCNGC 4 cut(s) 125, 1104, 1310, 1576
GsuI CTGGAG 1 cut(s) 327
HaeII RGCGCY 1 cut(s) 358
HaeIII GGCC 2 cut(s) 409, 1382
HapII CCGG 1 cut(s) 519
HhaI GCGC 2 cut(s) 357, 1068
Hin6I GCGC 2 cut(s) 355, 1066
HinP1I GCGC 2 cut(s) 355, 1066
HindIII AAGCTT 1 cut(s) 1082
HinfI GANTC 9 cut(s) 29, 394, 590, 721, 976, 1112, 1225, 1388, 1706
HpaII CCGG 1 cut(s) 519
HphI GGTGA 3 cut(s) 608, 1386, 1417
Hpy166II GTNNAC 6 cut(s) 445, 548, 683, 1151, 1321, 1493
Hpy188I TCNGA 8 cut(s) 564, 981, 1023, 1075, 1222, 1267, 1467, 1784
Hpy188III TCNNGA 5 cut(s) 205, 491, 740, 1126, 1250
Hpy8I GTNNAC 6 cut(s) 445, 548, 683, 1151, 1321, 1493
HpyAV CCTTC 7 cut(s) 85, 490, 677, 896, 1070, 1200, 1565
HpyCH4III ACNGT 4 cut(s) 1273, 1460, 1739, 1747
HpyCH4V TGCA 6 cut(s) 548, 611, 758, 1168, 1424, 1531
HpyF10VI GCNNNNNNNGC 3 cut(s) 363, 926, 1065
HpyF3I CTNAG 4 cut(s) 49, 128, 1116, 1384
HspAI GCGC 2 cut(s) 355, 1066
KpnI GGTACC 1 cut(s) 531
LmnI GCTCC 5 cut(s) 112, 297, 706, 1183, 1687
Lsp1109I GCAGC 4 cut(s) 136, 1090, 1296, 1562
LweI GCATC 2 cut(s) 1090, 1642
MaeI CTAG 4 cut(s) 309, 326, 740, 828
MfeI CAATTG 1 cut(s) 1776
MflI RGATCY 2 cut(s) 1048, 1675
MhlI GDGCHC 1 cut(s) 550
MlsI TGGCCA 1 cut(s) 409
MluNI TGGCCA 1 cut(s) 409
MlyI GAGTC 2 cut(s) 38, 1234
MmeI TCCRAC 3 cut(s) 977, 1563, 1578
Mox20I TGGCCA 1 cut(s) 409
MroXI GAANNNNTTC 1 cut(s) 558
MscI TGGCCA 1 cut(s) 409
MseI TTAA 6 cut(s) 21, 62, 182, 537, 1230, 1751
MslI CAYNNNNRTG 3 cut(s) 852, 1349, 1399
Msp20I TGGCCA 1 cut(s) 409
MspI CCGG 1 cut(s) 519
MspR9I CCNGG 2 cut(s) 150, 519
MunI CAATTG 1 cut(s) 1776
Mva1269I GAATGC 1 cut(s) 1360
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 3 cut(s) 363, 926, 1065
NciI CCSGG 1 cut(s) 519
NdeI CATATG 1 cut(s) 1519
NlaIV GGNNCC 4 cut(s) 73, 372, 515, 529
NmeAIII GCCGAG 1 cut(s) 746
NspI RCATGY 4 cut(s) 1059, 1168, 1535, 1715
OliI CACNNNNGTG 1 cut(s) 1399
PaeI GCATGC 3 cut(s) 1059, 1168, 1535
PaeR7I CTCGAG 1 cut(s) 238
PagI TCATGA 1 cut(s) 490
PaqCI CACCTGC 1 cut(s) 934
PciI ACATGT 1 cut(s) 1711
PcsI WCGNNNNNNNCGW 1 cut(s) 889
PctI GAATGC 1 cut(s) 1360
PdmI GAANNNNTTC 1 cut(s) 558
PfeI GAWTC 7 cut(s) 394, 590, 721, 976, 1112, 1388, 1706
PflFI GACNNNGTC 1 cut(s) 691
PflMI CCANNNNNTGG 1 cut(s) 218
PkrI GCNGC 4 cut(s) 126, 1105, 1311, 1577
PleI GAGTC 2 cut(s) 37, 1233
PpsI GAGTC 2 cut(s) 37, 1233
PpuMI RGGWCCY 1 cut(s) 72
PscI ACATGT 1 cut(s) 1711
PshAI GACNNNNGTC 1 cut(s) 1461
PshBI ATTAAT 2 cut(s) 62, 1751
PsiI TTATAA 2 cut(s) 390, 1557
Psp5II RGGWCCY 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 4 cut(s) 73, 372, 515, 529
PspPI GGNCC 1 cut(s) 72
PspPPI RGGWCCY 1 cut(s) 72
PspXI VCTCGAGB 1 cut(s) 238
PstI CTGCAG 1 cut(s) 613
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 2 cut(s) 1048, 1675
PsyI GACNNNGTC 1 cut(s) 691
RsaI GTAC 5 cut(s) 154, 529, 607, 684, 905
RsaNI GTAC 5 cut(s) 153, 528, 606, 683, 904
RseI CAYNNNNRTG 3 cut(s) 852, 1349, 1399
SaqAI TTAA 6 cut(s) 21, 62, 182, 537, 1230, 1751
SatI GCNGC 4 cut(s) 125, 1104, 1310, 1576
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 2 cut(s) 38, 1234
ScrFI CCNGG 2 cut(s) 150, 519
SduI GDGCHC 1 cut(s) 550
SfaNI GCATC 2 cut(s) 1090, 1642
SfcI CTRYAG 1 cut(s) 609
Sfr274I CTCGAG 1 cut(s) 238
SinI GGWCC 1 cut(s) 72
SlaI CTCGAG 1 cut(s) 238
SmiMI CAYNNNNRTG 3 cut(s) 852, 1349, 1399
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
SpeI ACTAGT 1 cut(s) 308
SphI GCATGC 3 cut(s) 1059, 1168, 1535
SsiI CCGC 1 cut(s) 1622
SspMI CTAG 4 cut(s) 309, 326, 740, 828
StyD4I CCNGG 2 cut(s) 148, 517
StyI CCWWGG 2 cut(s) 675, 705
TaaI ACNGT 4 cut(s) 1273, 1460, 1739, 1747
TaqI TCGA 2 cut(s) 177, 239
TatI WGTACW 1 cut(s) 682
TfiI GAWTC 7 cut(s) 394, 590, 721, 976, 1112, 1388, 1706
Tru1I TTAA 6 cut(s) 21, 62, 182, 537, 1230, 1751
Tru9I TTAA 6 cut(s) 21, 62, 182, 537, 1230, 1751
TscAI CASTG 2 cut(s) 341, 1744
TseI GCWGC 4 cut(s) 124, 1103, 1309, 1575
TspDTI ATGAA 9 cut(s) 264, 479, 809, 864, 1052, 1367, 1380, 1424, 1445
TspRI CASTG 2 cut(s) 341, 1744
Tth111I GACNNNGTC 1 cut(s) 691
Van91I CCANNNNNTGG 1 cut(s) 218
VneI GTGCAC 1 cut(s) 546
VpaK11BI GGWCC 1 cut(s) 72
VspI ATTAAT 2 cut(s) 62, 1751
XapI RAATTY 3 cut(s) 726, 1256, 1688
XbaI TCTAGA 1 cut(s) 739
XceI RCATGY 4 cut(s) 1059, 1168, 1535, 1715
XcmI CCANNNNNNNNNTGG 2 cut(s) 539, 1692
XhoI CTCGAG 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 1150
XmnI GAANNNNTTC 1 cut(s) 558
XspI CTAG 4 cut(s) 309, 326, 740, 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.