Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010935

Physical Location & Seq

Genomic Coordinates Forward (+)

39941496 .. 39947685

Gene Structure 6190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG312600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGGAGGAGGTTCAGCTTTTAAATCGCAGTCATGGCAGATGATACTGGTGGCTCTGCTATTGATGGTTGGGTCCTTCTACGCTGGAACTCTCTTTCGCCAAAGTGCTCCCAACTACGTCTCTCAGCTTAGCTCCTACAATTATTCATATTCTGGTACTTCCACGTTTGCAAATAAAGTTGAATTAACTTATAGAAGAACACCACTTGTGATACCAGAGACGGGTGTGGATGTTTGTCCGTTGACATTCAATGAATATATTCCTTGCCATAATGTTTCATACATACAAACTTTGCTCCCAAATTTGGACACTAGTAGAAGAGAAGAACTAGAGAGACACTGTCCGCCACTAGAGAACCGCTTGTTTTGCTTGGTTCCACCACCCAAAGATTATAAGATACCAATAAGATGGCCAACCAGCAGGGATTATGTGTGGCGAAGCAATGTGAATCATACACGTCTTGCTGAAGTCAAAGGAGGACAGAATTGGGTGCATGAGAAGGATCAACTCTGGTGGTTCCCCGGTGGTGGTACCCATTTTAAACATGGTGCACCTGAGTACATTCAGAGATTGGGAAATATGATAACCAATGATACAGGTGATCTACATACTGCAGGGGTCGTTCAAGTTTTGGATGTTGGTTGTGGGGTTTCCAGCTTTTCTGCTTTCCTTCTTCCCTTGGGTATACAGACCATGTCCTTTGCTCCCAAGGATGGCCATGAGAATCAAATTCAATTTTCGCTGGAGCGAGGCATTGGTGCAATGATCTCTGCAATAGCAACAAAGCAATTGCCATATCCTACTAGCTCTTTTGAGATGGTTCATTGTTCTAGGTGTCGTGTTGATTGGCATGAAAATGATGGTATTCTTCTAAAAGAAGTGAATCGCCTTCTGCGTTCTAATGGGTACTTTGTCTATTCAGCTCCACCTGCTTATAGAAAGGATAAAGACTATCCAATAATTTGGCAGAAGTTAGTTAATCTGACTTCAGCAATGTGTTGGAAACTCATTGCTAAAAGAGTTCAGACTGCTATTTGGATGAAGCAAGAAGATCCGTCATGCCTTCAGCGCATTTCTGAACAGAAACTTATAGATATATGTGATGCTGCTGATAATTTGAAGTCATCCTGGAATACAAAACTGGGAAATTGTATACAAGTAAGGGGCATGCAAACAGATGCTCCAAAACTCCCTTCTAGACCAGAGCGTCTTTCAATATACTCGGAGAGTCTTGAAAGAATTGGTTTGATGCTTCTTCTTTTCCCTTCTATTTTAATTTTCTTGTCTACTGTTTTTTGTACTTTCCAAGTTGTACATGAGGCAACTTCATGTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

445

Amino Acids

50.45

Weight (kDa)

8.48

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	85 - 413	2.1e-126	Putative S-adenosyl-L-methionine-dependent methyltransferase
Methyltransf_11	PF08241	211 - 305	2.5e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10200 AT3G10200 AT5G04060
fragaria_vesca	FvH4_6g25080 FvH4_6g25080
malus_domestica	MD14G1083600.v1.1
prunus_persica	Prupe.7G047000_v2.0.a1
pyrus_communis	pycom14g07260
rosa_chinensis	RchiOBHm_Chr2g0124841
rosa_laevigata	RLG00000018828
rosa_multiflora	Rmu_co8443503.1_g000001 Rmu_sc0005075.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119610 Rroxscaffold_4G00311160
rosa_rugosa	Rorug02G0253100
rosa_samantha	Rh2AG312600 Rh2BG320800 Rh2CG300900 Rh2DG338100
rosa_wichuraiana	Rw2G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	393
AarI	CACCTGC	1 cut(s)	937
AasI	GACNNNNNNGTC	1 cut(s)	1206
Acc36I	ACCTGC	1 cut(s)	937
Acc65I	GGTACC	1 cut(s)	530
AccB1I	GGYRCC	1 cut(s)	530
AccI	GTMKAC	3 cut(s)	685, 1153, 1286
AciI	CCGC	2 cut(s)	344, 358
AclWI	GGATC	2 cut(s)	510, 1046
AcoI	YGGCCR	2 cut(s)	410, 715
AcsI	RAATTY	2 cut(s)	301, 729
AcuI	CTGAAG	3 cut(s)	486, 972, 1049
AfaI	GTAC	6 cut(s)	157, 532, 560, 908, 1300, 1314
AfiI	CCNNNNNNNGG	4 cut(s)	221, 304, 527, 713
AflIII	ACRYGT	1 cut(s)	455
AgsI	TTSAA	7 cut(s)	182, 250, 626, 734, 1120, 1215, 1235
AhlI	ACTAGT	1 cut(s)	311
AjiI	CACGTC	1 cut(s)	458
AjnI	CCWGG	1 cut(s)	1127
AjuI	GAANNNNNNNTTGG	2 cut(s)	1177, 1209
AluBI	AGCT	6 cut(s)	17, 127, 132, 657, 807, 923
AluI	AGCT	6 cut(s)	17, 127, 132, 657, 807, 923
Alw21I	GWGCWC	2 cut(s)	109, 553
Alw26I	GTCTC	3 cut(s)	124, 212, 328
Alw44I	GTGCAC	1 cut(s)	549
AlwI	GGATC	2 cut(s)	510, 1046
AoxI	GGCC	2 cut(s)	410, 715
ApaLI	GTGCAC	1 cut(s)	549
ApeKI	GCWGC	1 cut(s)	1106
ApoI	RAATTY	2 cut(s)	301, 729
Asp700I	GAANNNNTTC	1 cut(s)	258
Asp718I	GGTACC	1 cut(s)	530
AspLEI	GCGC	1 cut(s)	1071
AspS9I	GGNCC	1 cut(s)	72
AsuC2I	CCSGG	1 cut(s)	522
AsuHPI	GGTGA	1 cut(s)	611
AvaII	GGWCC	1 cut(s)	72
BaeGI	GKGCMC	1 cut(s)	553
BalI	TGGCCA	2 cut(s)	412, 717
BanI	GGYRCC	1 cut(s)	530
Bbv12I	GWGCWC	2 cut(s)	109, 553
BbvI	GCAGC	1 cut(s)	1093
BccI	CCATC	5 cut(s)	58, 402, 707, 811, 854
BciT130I	CCWGG	1 cut(s)	1129
BcnI	CCSGG	1 cut(s)	522
BcoDI	GTCTC	3 cut(s)	124, 212, 328
BcuI	ACTAGT	1 cut(s)	311
BfaI	CTAG	6 cut(s)	312, 329, 350, 804, 831, 1197
BfmI	CTRYAG	1 cut(s)	612
BfuAI	ACCTGC	1 cut(s)	937
BisI	GCNGC	1 cut(s)	1107
BlpI	GCTNAGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	1108
Bme1390I	CCNGG	2 cut(s)	522, 1129
Bme18I	GGWCC	1 cut(s)	72
BmgBI	CACGTC	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	4 cut(s)	73, 375, 518, 532
BmrFI	CCNGG	2 cut(s)	522, 1129
BmrI	ACTGGG	1 cut(s)	1151
BmsI	GCATC	3 cut(s)	1093, 1168, 1239
BmuI	ACTGGG	1 cut(s)	1151
BpmI	CTGGAG	1 cut(s)	764
Bpu1102I	GCTNAGC	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	522
BsaJI	CCNNGG	3 cut(s)	520, 678, 708
BsaXI	ACNNNNNCTCC	2 cut(s)	1165, 1195
Bsc4I	CCNNNNNNNGG	4 cut(s)	221, 304, 527, 713
Bse1I	ACTGG	2 cut(s)	51, 1146
Bse3DI	GCAATG	4 cut(s)	448, 768, 999, 1008
BseBI	CCWGG	1 cut(s)	1129
BseDI	CCNNGG	3 cut(s)	520, 678, 708
BseGI	GGATG	5 cut(s)	235, 640, 718, 1044, 1124
BseLI	CCNNNNNNNGG	4 cut(s)	221, 304, 527, 713
BseMI	GCAATG	4 cut(s)	448, 768, 999, 1008
BseMII	CTCAG	2 cut(s)	137, 546
BseNI	ACTGG	2 cut(s)	51, 1146
BseRI	GAGGAG	1 cut(s)	21
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	1 cut(s)	1093
BshFI	GGCC	2 cut(s)	412, 717
BshNI	GGYRCC	1 cut(s)	530
BsiHKAI	GWGCWC	2 cut(s)	109, 553
BsiSI	CCGG	1 cut(s)	522
BslI	CCNNNNNNNGG	4 cut(s)	221, 304, 527, 713
BsmAI	GTCTC	3 cut(s)	124, 212, 328
BsmBI	CGTCTC	2 cut(s)	124, 212
BsnI	GGCC	2 cut(s)	412, 717
Bsp1286I	GDGCHC	2 cut(s)	109, 553
Bsp1407I	TGTACA	1 cut(s)	1312
Bsp143I	GATC	4 cut(s)	502, 601, 765, 1051
Bsp1720I	GCTNAGC	1 cut(s)	128
BspACI	CCGC	2 cut(s)	344, 358
BspANI	GGCC	2 cut(s)	412, 717
BspCNI	CTCAG	2 cut(s)	136, 547
BspLI	GGNNCC	4 cut(s)	73, 375, 518, 532
BspMAI	CTGCAG	1 cut(s)	616
BspMI	ACCTGC	1 cut(s)	937
BspPI	GGATC	2 cut(s)	510, 1046
BspT107I	GGYRCC	1 cut(s)	530
BsrDI	GCAATG	4 cut(s)	448, 768, 999, 1008
BsrGI	TGTACA	1 cut(s)	1312
BsrI	ACTGG	2 cut(s)	51, 1146
BssECI	CCNNGG	3 cut(s)	520, 678, 708
BssMI	GATC	4 cut(s)	502, 601, 765, 1051
BssNAI	GTATAC	2 cut(s)	686, 1154
BssT1I	CCWWGG	2 cut(s)	678, 708
Bst1107I	GTATAC	2 cut(s)	686, 1154
Bst2UI	CCWGG	1 cut(s)	1129
Bst4CI	ACNGT	2 cut(s)	341, 1291
Bst6I	CTCTTC	1 cut(s)	313
BstAUI	TGTACA	1 cut(s)	1312
BstC8I	GCNNGC	1 cut(s)	1169
BstDEI	CTNAG	3 cut(s)	123, 128, 555
BstF5I	GGATG	5 cut(s)	235, 640, 718, 1044, 1124
BstHHI	GCGC	1 cut(s)	1071
BstKTI	GATC	4 cut(s)	505, 604, 768, 1054
BstMAI	GTCTC	3 cut(s)	124, 212, 328
BstMBI	GATC	4 cut(s)	502, 601, 765, 1051
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 366, 929, 1068
BstNI	CCWGG	1 cut(s)	1129
BstNSI	RCATGY	1 cut(s)	1171
BstSCI	CCNGG	2 cut(s)	520, 1127
BstSFI	CTRYAG	1 cut(s)	612
BstSLI	GKGCMC	1 cut(s)	553
BstV1I	GCAGC	1 cut(s)	1093
BstX2I	RGATCY	1 cut(s)	1051
BstXI	CCANNNNNNTGG	2 cut(s)	408, 963
BstYI	RGATCY	1 cut(s)	1051
BstZ17I	GTATAC	2 cut(s)	686, 1154
BsuRI	GGCC	2 cut(s)	412, 717
BtrI	CACGTC	1 cut(s)	458
BtsCI	GGATG	5 cut(s)	235, 640, 718, 1044, 1124
BtsIMutI	CAGTG	1 cut(s)	337
BveI	ACCTGC	1 cut(s)	937
Cac8I	GCNNGC	1 cut(s)	1169
CfoI	GCGC	1 cut(s)	1071
Cfr13I	GGNCC	1 cut(s)	72
CseI	GACGC	1 cut(s)	1196
Csp6I	GTAC	6 cut(s)	156, 531, 559, 907, 1299, 1313
CspCI	CAANNNNNGTGG	2 cut(s)	494, 529
CviJI	RGCY	9 cut(s)	17, 53, 127, 132, 412, 657, 717, 807, 923
CviKI_1	RGCY	9 cut(s)	17, 53, 127, 132, 412, 657, 717, 807, 923
CviQI	GTAC	6 cut(s)	156, 531, 559, 907, 1299, 1313
DdeI	CTNAG	3 cut(s)	123, 128, 555
DpnI	GATC	4 cut(s)	504, 603, 767, 1053
DpnII	GATC	4 cut(s)	502, 601, 765, 1051
DraI	TTTAAA	2 cut(s)	22, 541
DrdI	GACNNNNNNGTC	1 cut(s)	1206
DseDI	GACNNNNNNGTC	1 cut(s)	1206
EaeI	YGGCCR	2 cut(s)	410, 715
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
EciI	GGCGGA	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	678, 708
Eco47I	GGWCC	1 cut(s)	72
Eco57I	CTGAAG	3 cut(s)	486, 972, 1049
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	1127
EcoT14I	CCWWGG	2 cut(s)	678, 708
ErhI	CCWWGG	2 cut(s)	678, 708
Esp3I	CGTCTC	2 cut(s)	124, 212
FblI	GTMKAC	3 cut(s)	685, 1153, 1286
Fnu4HI	GCNGC	1 cut(s)	1107
FokI	GGATG	5 cut(s)	242, 647, 725, 1051, 1111
Fsp4HI	GCNGC	1 cut(s)	1107
FspBI	CTAG	6 cut(s)	312, 329, 350, 804, 831, 1197
GlaI	GCGC	1 cut(s)	1070
GluI	GCNGC	1 cut(s)	1107
GsuI	CTGGAG	1 cut(s)	764
HaeIII	GGCC	2 cut(s)	412, 717
HapII	CCGG	1 cut(s)	522
HgaI	GACGC	1 cut(s)	1196
HhaI	GCGC	1 cut(s)	1071
Hin6I	GCGC	1 cut(s)	1069
HinP1I	GCGC	1 cut(s)	1069
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HinfI	GANTC	4 cut(s)	448, 724, 883, 1228
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	5 cut(s)	243, 551, 686, 1154, 1287
Hpy188I	TCNGA	5 cut(s)	567, 984, 1026, 1078, 1225
Hpy188III	TCNNGA	2 cut(s)	1197, 1232
Hpy8I	GTNNAC	5 cut(s)	243, 551, 686, 1154, 1287
HpyAV	CCTTC	7 cut(s)	85, 493, 680, 899, 1073, 1203, 1275
HpyCH4III	ACNGT	2 cut(s)	341, 1291
HpyCH4IV	ACGT	3 cut(s)	117, 164, 457
HpyCH4V	TGCA	7 cut(s)	170, 493, 551, 614, 761, 773, 1171
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 366, 929, 1068
HpyF3I	CTNAG	3 cut(s)	123, 128, 555
HpySE526I	ACGT	3 cut(s)	117, 164, 457
HspAI	GCGC	1 cut(s)	1069
KpnI	GGTACC	1 cut(s)	534
Kzo9I	GATC	4 cut(s)	502, 601, 765, 1051
LmnI	GCTCC	7 cut(s)	112, 137, 300, 709, 745, 928, 1186
Lsp1109I	GCAGC	1 cut(s)	1093
LweI	GCATC	3 cut(s)	1093, 1168, 1239
MaeI	CTAG	6 cut(s)	312, 329, 350, 804, 831, 1197
MaeII	ACGT	3 cut(s)	117, 164, 457
MalI	GATC	4 cut(s)	504, 603, 767, 1053
MboI	GATC	4 cut(s)	502, 601, 765, 1051
MboII	GAAGA	7 cut(s)	207, 330, 335, 665, 860, 1061, 1247
MfeI	CAATTG	1 cut(s)	788
MflI	RGATCY	1 cut(s)	1051
MhlI	GDGCHC	2 cut(s)	109, 553
MlsI	TGGCCA	2 cut(s)	412, 717
MluNI	TGGCCA	2 cut(s)	412, 717
MlyI	GAGTC	1 cut(s)	1237
MmeI	TCCRAC	1 cut(s)	980
MnlI	CCTC	3 cut(s)	470, 743, 1312
Mox20I	TGGCCA	2 cut(s)	412, 717
MroXI	GAANNNNTTC	1 cut(s)	258
MscI	TGGCCA	2 cut(s)	412, 717
MseI	TTAA	5 cut(s)	21, 185, 540, 978, 1274
MslI	CAYNNNNRTG	1 cut(s)	855
Msp20I	TGGCCA	2 cut(s)	412, 717
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	2 cut(s)	522, 1129
MunI	CAATTG	1 cut(s)	788
MvaI	CCWGG	1 cut(s)	1129
MwoI	GCNNNNNNNGC	4 cut(s)	34, 366, 929, 1068
NciI	CCSGG	1 cut(s)	522
NdeII	GATC	4 cut(s)	502, 601, 765, 1051
NlaIV	GGNNCC	4 cut(s)	73, 375, 518, 532
NspI	RCATGY	1 cut(s)	1171
PaeI	GCATGC	1 cut(s)	1171
PaqCI	CACCTGC	1 cut(s)	937
PcsI	WCGNNNNNNNCGW	1 cut(s)	892
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	3 cut(s)	448, 724, 883
PflFI	GACNNNGTC	2 cut(s)	339, 694
PfoI	TCCNGGA	1 cut(s)	1127
PkrI	GCNGC	1 cut(s)	1108
PleI	GAGTC	1 cut(s)	1236
PpsI	GAGTC	1 cut(s)	1236
PpuMI	RGGWCCY	1 cut(s)	72
PsiI	TTATAA	1 cut(s)	393
Psp5II	RGGWCCY	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	1127
PspGI	CCWGG	1 cut(s)	1127
PspN4I	GGNNCC	4 cut(s)	73, 375, 518, 532
PspPI	GGNCC	1 cut(s)	72
PspPPI	RGGWCCY	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	616
PsuI	RGATCY	1 cut(s)	1051
PsyI	GACNNNGTC	2 cut(s)	339, 694
RsaI	GTAC	6 cut(s)	157, 532, 560, 908, 1300, 1314
RsaNI	GTAC	6 cut(s)	156, 531, 559, 907, 1299, 1313
RseI	CAYNNNNRTG	1 cut(s)	855
SaqAI	TTAA	5 cut(s)	21, 185, 540, 978, 1274
SatI	GCNGC	1 cut(s)	1107
Sau3AI	GATC	4 cut(s)	502, 601, 765, 1051
Sau96I	GGNCC	1 cut(s)	72
SchI	GAGTC	1 cut(s)	1237
ScrFI	CCNGG	2 cut(s)	522, 1129
SduI	GDGCHC	2 cut(s)	109, 553
SfaNI	GCATC	3 cut(s)	1093, 1168, 1239
SfcI	CTRYAG	1 cut(s)	612
SinI	GGWCC	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	855
SpeI	ACTAGT	1 cut(s)	311
SphI	GCATGC	1 cut(s)	1171
SsiI	CCGC	2 cut(s)	344, 358
SspMI	CTAG	6 cut(s)	312, 329, 350, 804, 831, 1197
StyD4I	CCNGG	2 cut(s)	520, 1127
StyI	CCWWGG	2 cut(s)	678, 708
TaaI	ACNGT	2 cut(s)	341, 1291
TaiI	ACGT	3 cut(s)	120, 167, 460
TatI	WGTACW	3 cut(s)	558, 1298, 1312
TfiI	GAWTC	3 cut(s)	448, 724, 883
Tru1I	TTAA	5 cut(s)	21, 185, 540, 978, 1274
Tru9I	TTAA	5 cut(s)	21, 185, 540, 978, 1274
TscAI	CASTG	1 cut(s)	344
TseI	GCWGC	1 cut(s)	1106
TspDTI	ATGAA	7 cut(s)	135, 267, 267, 812, 867, 1055, 1317
TspGWI	ACGGA	2 cut(s)	228, 1044
TspRI	CASTG	1 cut(s)	344
Tth111I	GACNNNGTC	2 cut(s)	339, 694
VneI	GTGCAC	1 cut(s)	549
VpaK11BI	GGWCC	1 cut(s)	72
XapI	RAATTY	2 cut(s)	301, 729
XbaI	TCTAGA	1 cut(s)	1196
XceI	RCATGY	1 cut(s)	1171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XmiI	GTMKAC	3 cut(s)	685, 1153, 1286
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	6 cut(s)	312, 329, 350, 804, 831, 1197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.