Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005075.1

Orthogroup ID

OG0010935

Physical Location & Seq

Genomic Coordinates Forward (+)

8167 .. 12956

Gene Structure 4790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005075.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1587 bp

atgggaggaggttcagcttttaaatcgcagtcatggcagatgatactggtggctctgctattgatggttgggtccttctacgctggaactctctttcgccaaagtcctcccaactacgtctctcagcttagctcctacaattattcattttctggtacttccacgtttgcaaataaagttgaattaacttatagaagaacaccacttgtgataccagagacgggtgtggatgtttgtccattgacattcaatgaatatatcccttgccataatgtttcatacatacaaactttgctcccaaatttggatactagtagaagagaagaactagagagacactgtccgccactagagaaccgcttgttttgcttggttccaccacccaaagattataagataccaataagatggccaaccagcagggattatgtgtggcgaagcaatgtgaatcatacacgtcttgctgaagtcaaaggaggacagaattggaccatgtcctttgctcccaaggatggccatgagaatcaaattcaattttcgctggagcgaggcattggtgcaatgatctctgcaatagcaacaaagcaattgccatatcctactagctcttttgagatggttcattgttctaggtgtcgtgttgattggcatgaaaatgatggtattcttctaaaagaagtgaatcgccttctgcgttctaatgggtactttgtctattcagctccacctgcttatagaaaggataaagactatccaataatttggcagaagttcgttaatctgacttcagcaatgtgttggaaactcattgctaaaagagttcagactgctatttggatgaagcaagaagatccgtcatgccttcagcgcatttctgaacagaaacttatagatatatgtgatgctgctgataatttgaagtcatcctggaatacaaaactgggaaattgtatacaagtaaggggcatgcaaacagatgctccaaaactcccttctagaccagagcgtctttcaatatactcggagagtcttgaaagaattggtattagtcaaggggaatttacttcagagaccgtcttttggcaagatcaagttcagcattactggcggctgctgaatgtgaacaaaacagaaatccgaaatgtcatggacatgaatgctttttgtggtggatttgctgtggccttagattcattacccatgtgggtgatgaatatagttcctgcgaccatgaagaatacgttgtctgccatttatgaccgtggtctgattggtgctttccatgattggtgtgaaccattttctacttatccacgcacatatgatctattgcatgccaaccacctcttttctcattataaggaatgtggagaaggctgtttgttggaggatatccttttggaaatggacaggatgataagaccgcagggatttattatcattagagatgaggaagctattacatcaacgatccaggatcttgctccaaaatttttgtgggaggttgaattgcatttgctggacaatataaagaagaacaaagaaaccgtgttaatttgtaggaagaagttttgggcaattgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

528

Amino Acids

60.89

Weight (kDa)

7.84

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10200 AT3G10200 AT5G04060
fragaria_vesca	FvH4_6g25080 FvH4_6g25080
malus_domestica	MD14G1083600.v1.1
prunus_persica	Prupe.7G047000_v2.0.a1
pyrus_communis	pycom14g07260
rosa_chinensis	RchiOBHm_Chr2g0124841
rosa_laevigata	RLG00000018828
rosa_multiflora	Rmu_co8443503.1_g000001 Rmu_sc0005075.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119610 Rroxscaffold_4G00311160
rosa_rugosa	Rorug02G0253100
rosa_samantha	Rh2AG312600 Rh2BG320800 Rh2CG300900 Rh2DG338100
rosa_wichuraiana	Rw2G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	393, 1359
AarI	CACCTGC	1 cut(s)	736
AasI	GACNNNNNNGTC	1 cut(s)	1005
Acc36I	ACCTGC	1 cut(s)	736
AccI	GTMKAC	1 cut(s)	952
AciI	CCGC	4 cut(s)	344, 358, 1108, 1424
AclWI	GGATC	3 cut(s)	845, 1465, 1485
AcoI	YGGCCR	2 cut(s)	410, 514
AcsI	RAATTY	4 cut(s)	301, 528, 1058, 1490
AcuI	CTGAAG	4 cut(s)	486, 771, 848, 1050
AfaI	GTAC	2 cut(s)	157, 707
AfiI	CCNNNNNNNGG	4 cut(s)	221, 304, 512, 1080
AflIII	ACRYGT	1 cut(s)	455
AgsI	TTSAA	7 cut(s)	182, 250, 533, 919, 1014, 1034, 1508
AhlI	ACTAGT	1 cut(s)	311
AjiI	CACGTC	1 cut(s)	458
AjnI	CCWGG	2 cut(s)	926, 1473
AjuI	GAANNNNNNNTTGG	2 cut(s)	976, 1008
AluBI	AGCT	6 cut(s)	17, 127, 132, 606, 722, 1457
AluI	AGCT	6 cut(s)	17, 127, 132, 606, 722, 1457
Alw26I	GTCTC	4 cut(s)	124, 212, 328, 1064
AlwI	GGATC	3 cut(s)	845, 1465, 1485
AoxI	GGCC	3 cut(s)	410, 514, 1182
ApeKI	GCWGC	2 cut(s)	905, 1111
ApoI	RAATTY	4 cut(s)	301, 528, 1058, 1490
AspLEI	GCGC	1 cut(s)	870
AspS9I	GGNCC	2 cut(s)	72, 489
AsuHPI	GGTGA	1 cut(s)	1219
AvaII	GGWCC	2 cut(s)	72, 489
BalI	TGGCCA	2 cut(s)	412, 516
BbvI	GCAGC	2 cut(s)	892, 1098
BccI	CCATC	5 cut(s)	58, 402, 506, 610, 653
BciT130I	CCWGG	2 cut(s)	928, 1475
BciVI	GTATCC	1 cut(s)	301
BcoDI	GTCTC	4 cut(s)	124, 212, 328, 1064
BcuI	ACTAGT	1 cut(s)	311
BfaI	CTAG	6 cut(s)	312, 329, 350, 603, 630, 996
BfuAI	ACCTGC	1 cut(s)	736
BfuI	GTATCC	1 cut(s)	301
BisI	GCNGC	3 cut(s)	906, 1109, 1112
BlpI	GCTNAGC	1 cut(s)	128
BlsI	GCNGC	3 cut(s)	907, 1110, 1113
Bme1390I	CCNGG	2 cut(s)	928, 1475
Bme18I	GGWCC	2 cut(s)	72, 489
BmgBI	CACGTC	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	72, 489
BmiI	GGNNCC	2 cut(s)	73, 375
BmrFI	CCNGG	2 cut(s)	928, 1475
BmrI	ACTGGG	1 cut(s)	950
BmsI	GCATC	2 cut(s)	892, 967
BmuI	ACTGGG	1 cut(s)	950
BoxI	GACNNNNGTC	1 cut(s)	1263
BpmI	CTGGAG	1 cut(s)	563
Bpu1102I	GCTNAGC	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	1064
BsaJI	CCNNGG	2 cut(s)	507, 1261
BsaXI	ACNNNNNCTCC	2 cut(s)	964, 994
Bsc4I	CCNNNNNNNGG	4 cut(s)	221, 304, 512, 1080
Bse1I	ACTGG	3 cut(s)	51, 945, 1109
Bse3DI	GCAATG	4 cut(s)	448, 567, 798, 807
BseBI	CCWGG	2 cut(s)	928, 1475
BseDI	CCNNGG	2 cut(s)	507, 1261
BseGI	GGATG	5 cut(s)	235, 517, 843, 923, 1419
BseLI	CCNNNNNNNGG	4 cut(s)	221, 304, 512, 1080
BseMI	GCAATG	4 cut(s)	448, 567, 798, 807
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	3 cut(s)	51, 945, 1109
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	892, 1098
BshFI	GGCC	3 cut(s)	412, 516, 1184
BslI	CCNNNNNNNGG	4 cut(s)	221, 304, 512, 1080
BsmAI	GTCTC	4 cut(s)	124, 212, 328, 1064
BsmBI	CGTCTC	2 cut(s)	124, 212
BsmI	GAATGC	1 cut(s)	1162
BsnI	GGCC	3 cut(s)	412, 516, 1184
Bso31I	GGTCTC	1 cut(s)	1064
Bsp143I	GATC	6 cut(s)	564, 850, 1087, 1324, 1470, 1477
Bsp1720I	GCTNAGC	1 cut(s)	128
BspACI	CCGC	4 cut(s)	344, 358, 1108, 1424
BspANI	GGCC	3 cut(s)	412, 516, 1184
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	73, 375
BspMI	ACCTGC	1 cut(s)	736
BspPI	GGATC	3 cut(s)	845, 1465, 1485
BspTNI	GGTCTC	1 cut(s)	1064
BsrDI	GCAATG	4 cut(s)	448, 567, 798, 807
BsrI	ACTGG	3 cut(s)	51, 945, 1109
BssECI	CCNNGG	2 cut(s)	507, 1261
BssMI	GATC	6 cut(s)	564, 850, 1087, 1324, 1470, 1477
BssNAI	GTATAC	1 cut(s)	953
BssT1I	CCWWGG	1 cut(s)	507
Bst1107I	GTATAC	1 cut(s)	953
Bst2UI	CCWGG	2 cut(s)	928, 1475
Bst4CI	ACNGT	4 cut(s)	341, 1075, 1262, 1549
Bst6I	CTCTTC	1 cut(s)	313
BstC8I	GCNNGC	2 cut(s)	968, 1335
BstDEI	CTNAG	3 cut(s)	123, 128, 1186
BstDSI	CCRYGG	1 cut(s)	1261
BstF5I	GGATG	5 cut(s)	235, 517, 843, 923, 1419
BstHHI	GCGC	1 cut(s)	870
BstKTI	GATC	6 cut(s)	567, 853, 1090, 1327, 1473, 1480
BstMAI	GTCTC	4 cut(s)	124, 212, 328, 1064
BstMBI	GATC	6 cut(s)	564, 850, 1087, 1324, 1470, 1477
BstMWI	GCNNNNNNNGC	5 cut(s)	34, 366, 728, 867, 1105
BstNI	CCWGG	2 cut(s)	928, 1475
BstNSI	RCATGY	2 cut(s)	970, 1337
BstPAI	GACNNNNGTC	1 cut(s)	1263
BstSCI	CCNGG	2 cut(s)	926, 1473
BstV1I	GCAGC	2 cut(s)	892, 1098
BstX2I	RGATCY	2 cut(s)	850, 1477
BstXI	CCANNNNNNTGG	2 cut(s)	408, 762
BstYI	RGATCY	2 cut(s)	850, 1477
BstZ17I	GTATAC	1 cut(s)	953
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	3 cut(s)	412, 516, 1184
BtgI	CCRYGG	1 cut(s)	1261
BtrI	CACGTC	1 cut(s)	458
BtsCI	GGATG	5 cut(s)	235, 517, 843, 923, 1419
BtsIMutI	CAGTG	1 cut(s)	337
BveI	ACCTGC	1 cut(s)	736
Cac8I	GCNNGC	2 cut(s)	968, 1335
CfoI	GCGC	1 cut(s)	870
Cfr13I	GGNCC	2 cut(s)	72, 489
CseI	GACGC	1 cut(s)	995
Csp6I	GTAC	2 cut(s)	156, 706
CviQI	GTAC	2 cut(s)	156, 706
DdeI	CTNAG	3 cut(s)	123, 128, 1186
DpnI	GATC	6 cut(s)	566, 852, 1089, 1326, 1472, 1479
DpnII	GATC	6 cut(s)	564, 850, 1087, 1324, 1470, 1477
DraI	TTTAAA	1 cut(s)	22
DrdI	GACNNNNNNGTC	1 cut(s)	1005
DseDI	GACNNNNNNGTC	1 cut(s)	1005
EaeI	YGGCCR	2 cut(s)	410, 514
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
EciI	GGCGGA	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	507
Eco31I	GGTCTC	1 cut(s)	1064
Eco32I	GATATC	1 cut(s)	1393
Eco47I	GGWCC	2 cut(s)	72, 489
Eco57I	CTGAAG	4 cut(s)	486, 771, 848, 1050
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRII	CCWGG	2 cut(s)	926, 1473
EcoRV	GATATC	1 cut(s)	1393
EcoT14I	CCWWGG	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	507
Esp3I	CGTCTC	2 cut(s)	124, 212
FauNDI	CATATG	1 cut(s)	1321
FblI	GTMKAC	1 cut(s)	952
Fnu4HI	GCNGC	3 cut(s)	906, 1109, 1112
FokI	GGATG	5 cut(s)	242, 524, 850, 910, 1426
Fsp4HI	GCNGC	3 cut(s)	906, 1109, 1112
FspBI	CTAG	6 cut(s)	312, 329, 350, 603, 630, 996
GlaI	GCGC	1 cut(s)	869
GluI	GCNGC	3 cut(s)	906, 1109, 1112
GsuI	CTGGAG	1 cut(s)	563
HaeIII	GGCC	3 cut(s)	412, 516, 1184
HgaI	GACGC	1 cut(s)	995
HhaI	GCGC	1 cut(s)	870
Hin6I	GCGC	1 cut(s)	868
HinP1I	GCGC	1 cut(s)	868
HinfI	GANTC	5 cut(s)	448, 523, 682, 1027, 1190
HphI	GGTGA	1 cut(s)	1219
Hpy166II	GTNNAC	3 cut(s)	953, 1123, 1295
Hpy188I	TCNGA	8 cut(s)	783, 825, 877, 1024, 1069, 1139, 1269, 1586
Hpy188III	TCNNGA	2 cut(s)	996, 1031
Hpy8I	GTNNAC	3 cut(s)	953, 1123, 1295
HpyAV	CCTTC	5 cut(s)	85, 698, 872, 1002, 1367
HpyCH4III	ACNGT	4 cut(s)	341, 1075, 1262, 1549
HpyCH4IV	ACGT	4 cut(s)	117, 164, 457, 1241
HpyCH4V	TGCA	6 cut(s)	170, 560, 572, 970, 1333, 1513
HpyF10VI	GCNNNNNNNGC	5 cut(s)	34, 366, 728, 867, 1105
HpyF3I	CTNAG	3 cut(s)	123, 128, 1186
HpySE526I	ACGT	4 cut(s)	117, 164, 457, 1241
HspAI	GCGC	1 cut(s)	868
Kzo9I	GATC	6 cut(s)	564, 850, 1087, 1324, 1470, 1477
LmnI	GCTCC	7 cut(s)	137, 300, 508, 544, 727, 985, 1489
Lsp1109I	GCAGC	2 cut(s)	892, 1098
LweI	GCATC	2 cut(s)	892, 967
MaeI	CTAG	6 cut(s)	312, 329, 350, 603, 630, 996
MaeII	ACGT	4 cut(s)	117, 164, 457, 1241
MalI	GATC	6 cut(s)	566, 852, 1089, 1326, 1472, 1479
MboI	GATC	6 cut(s)	564, 850, 1087, 1324, 1470, 1477
MboII	GAAGA	8 cut(s)	207, 330, 335, 659, 860, 1246, 1546, 1576
MfeI	CAATTG	2 cut(s)	587, 1578
MflI	RGATCY	2 cut(s)	850, 1477
MlsI	TGGCCA	2 cut(s)	412, 516
MluNI	TGGCCA	2 cut(s)	412, 516
MlyI	GAGTC	1 cut(s)	1036
MmeI	TCCRAC	2 cut(s)	779, 1365
MnlI	CCTC	7 cut(s)	117, 470, 542, 1355, 1381, 1444, 1495
Mox20I	TGGCCA	2 cut(s)	412, 516
MscI	TGGCCA	2 cut(s)	412, 516
MseI	TTAA	4 cut(s)	21, 185, 777, 1553
MslI	CAYNNNNRTG	3 cut(s)	654, 1151, 1205
Msp20I	TGGCCA	2 cut(s)	412, 516
MspR9I	CCNGG	2 cut(s)	928, 1475
MunI	CAATTG	2 cut(s)	587, 1578
Mva1269I	GAATGC	1 cut(s)	1162
MvaI	CCWGG	2 cut(s)	928, 1475
MwoI	GCNNNNNNNGC	5 cut(s)	34, 366, 728, 867, 1105
NdeI	CATATG	1 cut(s)	1321
NdeII	GATC	6 cut(s)	564, 850, 1087, 1324, 1470, 1477
NlaIV	GGNNCC	2 cut(s)	73, 375
NspI	RCATGY	2 cut(s)	970, 1337
PaeI	GCATGC	2 cut(s)	970, 1337
PaqCI	CACCTGC	1 cut(s)	736
PcsI	WCGNNNNNNNCGW	1 cut(s)	691
PctI	GAATGC	1 cut(s)	1162
PfeI	GAWTC	4 cut(s)	448, 523, 682, 1190
PflFI	GACNNNGTC	2 cut(s)	339, 493
PfoI	TCCNGGA	2 cut(s)	926, 1473
PkrI	GCNGC	3 cut(s)	907, 1110, 1113
PleI	GAGTC	1 cut(s)	1035
PpsI	GAGTC	1 cut(s)	1035
PpuMI	RGGWCCY	1 cut(s)	72
PshAI	GACNNNNGTC	1 cut(s)	1263
PsiI	TTATAA	2 cut(s)	393, 1359
Psp5II	RGGWCCY	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	926, 1473
PspGI	CCWGG	2 cut(s)	926, 1473
PspN4I	GGNNCC	2 cut(s)	73, 375
PspPI	GGNCC	2 cut(s)	72, 489
PspPPI	RGGWCCY	1 cut(s)	72
PsuI	RGATCY	2 cut(s)	850, 1477
PsyI	GACNNNGTC	2 cut(s)	339, 493
RsaI	GTAC	2 cut(s)	157, 707
RsaNI	GTAC	2 cut(s)	156, 706
RseI	CAYNNNNRTG	3 cut(s)	654, 1151, 1205
SaqAI	TTAA	4 cut(s)	21, 185, 777, 1553
SatI	GCNGC	3 cut(s)	906, 1109, 1112
Sau3AI	GATC	6 cut(s)	564, 850, 1087, 1324, 1470, 1477
Sau96I	GGNCC	2 cut(s)	72, 489
SchI	GAGTC	1 cut(s)	1036
ScrFI	CCNGG	2 cut(s)	928, 1475
SfaNI	GCATC	2 cut(s)	892, 967
SinI	GGWCC	2 cut(s)	72, 489
SmiMI	CAYNNNNRTG	3 cut(s)	654, 1151, 1205
SpeI	ACTAGT	1 cut(s)	311
SphI	GCATGC	2 cut(s)	970, 1337
SsiI	CCGC	4 cut(s)	344, 358, 1108, 1424
SspMI	CTAG	6 cut(s)	312, 329, 350, 603, 630, 996
StyD4I	CCNGG	2 cut(s)	926, 1473
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	4 cut(s)	341, 1075, 1262, 1549
TaiI	ACGT	4 cut(s)	120, 167, 460, 1244
TauI	GCSGC	1 cut(s)	1111
TfiI	GAWTC	4 cut(s)	448, 523, 682, 1190
Tru1I	TTAA	4 cut(s)	21, 185, 777, 1553
Tru9I	TTAA	4 cut(s)	21, 185, 777, 1553
TscAI	CASTG	1 cut(s)	344
TseI	GCWGC	2 cut(s)	905, 1111
TspGWI	ACGGA	1 cut(s)	843
TspRI	CASTG	1 cut(s)	344
Tth111I	GACNNNGTC	2 cut(s)	339, 493
VpaK11BI	GGWCC	2 cut(s)	72, 489
XapI	RAATTY	4 cut(s)	301, 528, 1058, 1490
XbaI	TCTAGA	1 cut(s)	995
XceI	RCATGY	2 cut(s)	970, 1337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1494
XmiI	GTMKAC	1 cut(s)	952
XspI	CTAG	6 cut(s)	312, 329, 350, 603, 630, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.