Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010935

Physical Location & Seq

Genomic Coordinates Forward (+)

33475621 .. 33476864

Gene Structure 1244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGTTGTTGATTGATTATGCCAGCCAATTAAGCAAAGGCCACCGACAGACCTCCTTTTCTCAAGGGAAATATTCTTTTGGTTCCCCACTTTTGCCTTTGTTCTGTTTTGGGTCCTTCTATGCTGGAACTCTCTTTCGTCAAAGTGCTCCCAACTACGTCTCTCAGCTTAGCTCCTACAATTATTCATATTCTGGGGTCGTTCAAGTTTTGGATGATGGTTGTGAGGTTTCCAGCTTTTCTGCTTTCCTTCTTCCCTTGGGTGTACAGACCATGTCCTTTGCTCACAAGGATGGCCATGAGAATCAAATTCAATTTTCGCTGGAGCGAGGCATTGGTGCAATGATCTCTGCAATAGCAACAAAGCAATTGCCATATCCTACTAGCTCTTTTGAGATGGTTCATTGTTCTAGGTGTCGTGTTGATTGGCATGAAAATGATGGTATTCTTCTAAAAGAAGTGAATCGCCTTCTACGTTCTAATGGGTACTTTGTCTATTCAGCTCCACCTACTTATAGAAAGGATAAAGACTATCCAATAATTTGGGAGAAGTTAGTTAATCTGACTTCAGCAATGTGTTGGAAACTTATTGCTAAAAGAGTTCAGACTGCTATTTGGATGAAGCAACAAGATCCATCATGCCATCAACGCATTTCTGAACAGAAACTTATAGATATATGTGATGCTGCTGATAATTTGAAGTCATCCTGGAATACAAAACTGGGAAATGAGACTGTCTTTTGGCAAGATCAAGTTCAGCATTACTGGCGGCTGCTGAATGTGAACAAAACAGAAATCCGAAATGTCATGGACATGAATGCCTTTTGTGGTGGATTTGCTGTGGCCATAGATTCATCAACCATATGGGTGATGAATACAGTTCCTGCGACCATGAAGAATACGTTGTCTGCCATTTATGACCGTGGTCTGATTGGTGCTTTCCATGATTGGTGTGAACCATTTTCTACTTATCCACGCACATATGATCTATTGCATGCCAACCACCTCTTTTCTCATTATAAGGAATGTGGAGAAGGCTGGTTGTTGGAGGATATCCTTTTGGAAATGGACAGGATGATAAGACCGCAGGTGATCAATGGATTGACTTGGCGGACGATGGTGAATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

375

Amino Acids

43.03

Weight (kDa)

7.14

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	41 - 240	4.3e-74	Putative S-adenosyl-L-methionine-dependent methyltransferase
Methyltransf_29	PF03141	241 - 362	1.1e-52	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10200 AT3G10200 AT5G04060
fragaria_vesca	FvH4_6g25080 FvH4_6g25080
malus_domestica	MD14G1083600.v1.1
prunus_persica	Prupe.7G047000_v2.0.a1
pyrus_communis	pycom14g07260
rosa_chinensis	RchiOBHm_Chr2g0124841
rosa_laevigata	RLG00000018828
rosa_multiflora	Rmu_co8443503.1_g000001 Rmu_sc0005075.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119610 Rroxscaffold_4G00311160
rosa_rugosa	Rorug02G0253100
rosa_samantha	Rh2AG312600 Rh2BG320800 Rh2CG300900 Rh2DG338100
rosa_wichuraiana	Rw2G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1017
AarI	CACCTGC	1 cut(s)	1075
Acc36I	ACCTGC	1 cut(s)	1075
AciI	CCGC	3 cut(s)	766, 1082, 1108
AclWI	GGATC	1 cut(s)	623
AcoI	YGGCCR	2 cut(s)	292, 840
AcsI	RAATTY	1 cut(s)	306
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	2 cut(s)	264, 485
AgsI	TTSAA	3 cut(s)	203, 311, 697
AjnI	CCWGG	1 cut(s)	704
AluBI	AGCT	5 cut(s)	166, 171, 234, 384, 500
AluI	AGCT	5 cut(s)	166, 171, 234, 384, 500
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	2 cut(s)	163, 722
AlwI	GGATC	1 cut(s)	623
AlwNI	CAGNNNCTG	1 cut(s)	881
AoxI	GGCC	3 cut(s)	37, 292, 840
ApeKI	GCWGC	2 cut(s)	683, 769
ApoI	RAATTY	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	111
AsuHPI	GGTGA	2 cut(s)	877, 1099
AvaII	GGWCC	1 cut(s)	111
BalI	TGGCCA	2 cut(s)	294, 842
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	670, 756
BccI	CCATC	7 cut(s)	209, 284, 388, 431, 640, 648, 1108
BciT130I	CCWGG	1 cut(s)	706
BclI	TGATCA	1 cut(s)	1089
BcoDI	GTCTC	2 cut(s)	163, 722
BfaI	CTAG	2 cut(s)	381, 408
BfuAI	ACCTGC	1 cut(s)	1075
BisI	GCNGC	3 cut(s)	684, 767, 770
BlpI	GCTNAGC	1 cut(s)	167
BlsI	GCNGC	3 cut(s)	685, 768, 771
Bme1390I	CCNGG	1 cut(s)	706
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	2 cut(s)	82, 112
BmrFI	CCNGG	1 cut(s)	706
BmrI	ACTGGG	1 cut(s)	728
BmsI	GCATC	1 cut(s)	670
BmuI	ACTGGG	1 cut(s)	728
BoxI	GACNNNNGTC	1 cut(s)	921
BpmI	CTGGAG	1 cut(s)	341
Bpu1102I	GCTNAGC	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	255, 919
Bse1I	ACTGG	2 cut(s)	723, 767
Bse3DI	GCAATG	2 cut(s)	345, 576
BseBI	CCWGG	1 cut(s)	706
BseDI	CCNNGG	2 cut(s)	255, 919
BseGI	GGATG	5 cut(s)	217, 295, 621, 701, 1077
BseMI	GCAATG	2 cut(s)	345, 576
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	2 cut(s)	723, 767
BseXI	GCAGC	2 cut(s)	670, 756
BshFI	GGCC	3 cut(s)	39, 294, 842
BsiHKAI	GWGCWC	1 cut(s)	148
BsmAI	GTCTC	2 cut(s)	163, 722
BsmBI	CGTCTC	1 cut(s)	163
BsmI	GAATGC	1 cut(s)	820
BsnI	GGCC	3 cut(s)	39, 294, 842
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp1407I	TGTACA	1 cut(s)	262
Bsp143I	GATC	5 cut(s)	342, 628, 745, 982, 1089
Bsp1720I	GCTNAGC	1 cut(s)	167
BspACI	CCGC	3 cut(s)	766, 1082, 1108
BspANI	GGCC	3 cut(s)	39, 294, 842
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	82, 112
BspMI	ACCTGC	1 cut(s)	1075
BspPI	GGATC	1 cut(s)	623
BsrDI	GCAATG	2 cut(s)	345, 576
BsrGI	TGTACA	1 cut(s)	262
BsrI	ACTGG	2 cut(s)	723, 767
BssECI	CCNNGG	2 cut(s)	255, 919
BssMI	GATC	5 cut(s)	342, 628, 745, 982, 1089
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	706
Bst4CI	ACNGT	3 cut(s)	733, 877, 920
BstAUI	TGTACA	1 cut(s)	262
BstC8I	GCNNGC	2 cut(s)	22, 993
BstDEI	CTNAG	2 cut(s)	162, 167
BstDSI	CCRYGG	1 cut(s)	919
BstF5I	GGATG	5 cut(s)	217, 295, 621, 701, 1077
BstKTI	GATC	5 cut(s)	345, 631, 748, 985, 1092
BstMAI	GTCTC	2 cut(s)	163, 722
BstMBI	GATC	5 cut(s)	342, 628, 745, 982, 1089
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 645, 763
BstNI	CCWGG	1 cut(s)	706
BstNSI	RCATGY	1 cut(s)	995
BstPAI	GACNNNNGTC	1 cut(s)	921
BstSCI	CCNGG	1 cut(s)	704
BstV1I	GCAGC	2 cut(s)	670, 756
BstX2I	RGATCY	1 cut(s)	628
BstXI	CCANNNNNNTGG	1 cut(s)	540
BstYI	RGATCY	1 cut(s)	628
BsuRI	GGCC	3 cut(s)	39, 294, 842
BtgI	CCRYGG	1 cut(s)	919
BtsCI	GGATG	5 cut(s)	217, 295, 621, 701, 1077
BveI	ACCTGC	1 cut(s)	1075
Cac8I	GCNNGC	2 cut(s)	22, 993
CaiI	CAGNNNCTG	1 cut(s)	881
Cfr13I	GGNCC	1 cut(s)	111
Csp6I	GTAC	2 cut(s)	263, 484
CviAII	CATG	9 cut(s)	271, 296, 428, 636, 805, 811, 889, 941, 992
CviQI	GTAC	2 cut(s)	263, 484
DdeI	CTNAG	2 cut(s)	162, 167
DpnI	GATC	5 cut(s)	344, 630, 747, 984, 1091
DpnII	GATC	5 cut(s)	342, 628, 745, 982, 1089
EaeI	YGGCCR	2 cut(s)	292, 840
EciI	GGCGGA	1 cut(s)	1123
Eco130I	CCWWGG	1 cut(s)	255
Eco32I	GATATC	1 cut(s)	1051
Eco47I	GGWCC	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	704
EcoRV	GATATC	1 cut(s)	1051
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	9 cut(s)	274, 299, 431, 639, 808, 814, 892, 944, 995
FatI	CATG	9 cut(s)	270, 295, 427, 635, 804, 810, 888, 940, 991
FauNDI	CATATG	2 cut(s)	860, 979
FbaI	TGATCA	1 cut(s)	1089
Fnu4HI	GCNGC	3 cut(s)	684, 767, 770
FokI	GGATG	5 cut(s)	224, 302, 628, 688, 1084
Fsp4HI	GCNGC	3 cut(s)	684, 767, 770
FspBI	CTAG	2 cut(s)	381, 408
GluI	GCNGC	3 cut(s)	684, 767, 770
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	3 cut(s)	39, 294, 842
Hin1II	CATG	9 cut(s)	274, 299, 431, 639, 808, 814, 892, 944, 995
HinfI	GANTC	4 cut(s)	301, 460, 848, 1120
HphI	GGTGA	2 cut(s)	877, 1099
Hpy166II	GTNNAC	3 cut(s)	263, 781, 953
Hpy188I	TCNGA	5 cut(s)	561, 603, 655, 797, 927
Hpy8I	GTNNAC	3 cut(s)	263, 781, 953
HpyAV	CCTTC	4 cut(s)	124, 257, 476, 1025
HpyCH4III	ACNGT	3 cut(s)	733, 877, 920
HpyCH4IV	ACGT	3 cut(s)	156, 472, 899
HpyCH4V	TGCA	3 cut(s)	338, 350, 991
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 645, 763
HpyF3I	CTNAG	2 cut(s)	162, 167
HpySE526I	ACGT	3 cut(s)	156, 472, 899
Hsp92II	CATG	9 cut(s)	274, 299, 431, 639, 808, 814, 892, 944, 995
Ksp22I	TGATCA	1 cut(s)	1089
Kzo9I	GATC	5 cut(s)	342, 628, 745, 982, 1089
LmnI	GCTCC	4 cut(s)	151, 176, 322, 505
Lsp1109I	GCAGC	2 cut(s)	670, 756
LweI	GCATC	1 cut(s)	670
MaeI	CTAG	2 cut(s)	381, 408
MaeII	ACGT	3 cut(s)	156, 472, 899
MalI	GATC	5 cut(s)	344, 630, 747, 984, 1091
MboI	GATC	5 cut(s)	342, 628, 745, 982, 1089
MboII	GAAGA	3 cut(s)	242, 437, 904
MfeI	CAATTG	1 cut(s)	365
MflI	RGATCY	1 cut(s)	628
MhlI	GDGCHC	1 cut(s)	148
MlsI	TGGCCA	2 cut(s)	294, 842
MluCI	AATT	7 cut(s)	26, 178, 306, 311, 365, 537, 691
MluNI	TGGCCA	2 cut(s)	294, 842
MmeI	TCCRAC	2 cut(s)	557, 1023
MnlI	CCTC	5 cut(s)	61, 217, 320, 1013, 1039
Mox20I	TGGCCA	2 cut(s)	294, 842
MscI	TGGCCA	2 cut(s)	294, 842
MseI	TTAA	2 cut(s)	29, 555
MslI	CAYNNNNRTG	4 cut(s)	288, 432, 809, 863
Msp20I	TGGCCA	2 cut(s)	294, 842
MspR9I	CCNGG	1 cut(s)	706
MunI	CAATTG	1 cut(s)	365
Mva1269I	GAATGC	1 cut(s)	820
MvaI	CCWGG	1 cut(s)	706
MwoI	GCNNNNNNNGC	3 cut(s)	30, 645, 763
NdeI	CATATG	2 cut(s)	860, 979
NdeII	GATC	5 cut(s)	342, 628, 745, 982, 1089
NlaIII	CATG	9 cut(s)	274, 299, 431, 639, 808, 814, 892, 944, 995
NlaIV	GGNNCC	2 cut(s)	82, 112
NspI	RCATGY	1 cut(s)	995
PaeI	GCATGC	1 cut(s)	995
PaqCI	CACCTGC	1 cut(s)	1075
PcsI	WCGNNNNNNNCGW	1 cut(s)	469
PctI	GAATGC	1 cut(s)	820
PfeI	GAWTC	4 cut(s)	301, 460, 848, 1120
PflFI	GACNNNGTC	1 cut(s)	271
PfoI	TCCNGGA	1 cut(s)	704
PkrI	GCNGC	3 cut(s)	685, 768, 771
PpuMI	RGGWCCY	1 cut(s)	111
PshAI	GACNNNNGTC	1 cut(s)	921
PsiI	TTATAA	1 cut(s)	1017
Psp5II	RGGWCCY	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	704
PspGI	CCWGG	1 cut(s)	704
PspN4I	GGNNCC	2 cut(s)	82, 112
PspPI	GGNCC	1 cut(s)	111
PspPPI	RGGWCCY	1 cut(s)	111
PstNI	CAGNNNCTG	1 cut(s)	881
PsuI	RGATCY	1 cut(s)	628
PsyI	GACNNNGTC	1 cut(s)	271
RsaI	GTAC	2 cut(s)	264, 485
RsaNI	GTAC	2 cut(s)	263, 484
RseI	CAYNNNNRTG	4 cut(s)	288, 432, 809, 863
SaqAI	TTAA	2 cut(s)	29, 555
SatI	GCNGC	3 cut(s)	684, 767, 770
Sau3AI	GATC	5 cut(s)	342, 628, 745, 982, 1089
Sau96I	GGNCC	1 cut(s)	111
ScrFI	CCNGG	1 cut(s)	706
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	670
SinI	GGWCC	1 cut(s)	111
SmiMI	CAYNNNNRTG	4 cut(s)	288, 432, 809, 863
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
SphI	GCATGC	1 cut(s)	995
Sse9I	AATT	7 cut(s)	26, 178, 306, 311, 365, 537, 691
SsiI	CCGC	3 cut(s)	766, 1082, 1108
SspI	AATATT	1 cut(s)	71
SspMI	CTAG	2 cut(s)	381, 408
StyD4I	CCNGG	1 cut(s)	704
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	3 cut(s)	733, 877, 920
TaiI	ACGT	3 cut(s)	159, 475, 902
TasI	AATT	7 cut(s)	26, 178, 306, 311, 365, 537, 691
TatI	WGTACW	1 cut(s)	262
TauI	GCSGC	1 cut(s)	769
TfiI	GAWTC	4 cut(s)	301, 460, 848, 1120
Tru1I	TTAA	2 cut(s)	29, 555
Tru9I	TTAA	2 cut(s)	29, 555
TseI	GCWGC	2 cut(s)	683, 769
TspDTI	ATGAA	8 cut(s)	174, 389, 444, 632, 827, 840, 884, 905
Tth111I	GACNNNGTC	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	111
XapI	RAATTY	1 cut(s)	306
XceI	RCATGY	1 cut(s)	995
XspI	CTAG	2 cut(s)	381, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.