Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8443503.1

Orthogroup ID

OG0010935

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1480

Gene Structure 1480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8443503.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 673 bp

atggagggcagaacaccacttgtgataccagagacgggtgtggatgtttgtccattgacattcaatgaatatatcccttgccataatgtttcatacatacaaactttgctcccaaatttggatactagtagaagagaagaactagagagacactgtccgccactagagaaccgcttgttttgcttggttccaccacccaaagattataagataccaataagatggccaaccagcagggattatgtgtggcgaagcaatgtgaatcatacacgtcttgctgaagtcaaaggaggacagaattgggtgcatgagaaggatcaactctggtggttccctggtggtggtacccattttaaacatggtgcacctgagtacattcagagattgggaaatatgataaccaatgatacaggtgatctacatactgcaggggtcgttcaagttttggatgttggttgtggggtttccagcttttctgctttccttcttcccttgggtatacagaccatgtcctttgctcccaaggatggccatgagaatcaaattcaattttcgctggagcgaggcattggtgcaatgatctctgcaatagcaacaaagcaattgccatatcctactagctcttttgagatggttcattgttctaggtgtcgtgttgattggcatgaaaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

224

Amino Acids

25.41

Weight (kDa)

6.19

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10200 AT3G10200 AT5G04060
fragaria_vesca	FvH4_6g25080 FvH4_6g25080
malus_domestica	MD14G1083600.v1.1
prunus_persica	Prupe.7G047000_v2.0.a1
pyrus_communis	pycom14g07260
rosa_chinensis	RchiOBHm_Chr2g0124841
rosa_laevigata	RLG00000018828
rosa_multiflora	Rmu_co8443503.1_g000001 Rmu_sc0005075.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119610 Rroxscaffold_4G00311160
rosa_rugosa	Rorug02G0253100
rosa_samantha	Rh2AG312600 Rh2BG320800 Rh2CG300900 Rh2DG338100
rosa_wichuraiana	Rw2G025250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
Acc65I	GGTACC	1 cut(s)	344
AccB1I	GGYRCC	1 cut(s)	344
AccI	GTMKAC	1 cut(s)	499
AciI	CCGC	2 cut(s)	158, 172
AclWI	GGATC	1 cut(s)	324
AcoI	YGGCCR	2 cut(s)	224, 529
AcsI	RAATTY	2 cut(s)	115, 543
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	2 cut(s)	346, 374
AfiI	CCNNNNNNNGG	4 cut(s)	35, 118, 341, 527
AflIII	ACRYGT	1 cut(s)	269
AgsI	TTSAA	3 cut(s)	64, 440, 548
AhlI	ACTAGT	1 cut(s)	125
AjiI	CACGTC	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	2 cut(s)	471, 621
AluI	AGCT	2 cut(s)	471, 621
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	2 cut(s)	26, 142
Alw44I	GTGCAC	1 cut(s)	363
AlwI	GGATC	1 cut(s)	324
AoxI	GGCC	2 cut(s)	224, 529
ApaLI	GTGCAC	1 cut(s)	363
ApoI	RAATTY	2 cut(s)	115, 543
Asp718I	GGTACC	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	367
BalI	TGGCCA	2 cut(s)	226, 531
BanI	GGYRCC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	367
BccI	CCATC	3 cut(s)	216, 521, 625
BciT130I	CCWGG	1 cut(s)	336
BciVI	GTATCC	1 cut(s)	115
BcoDI	GTCTC	2 cut(s)	26, 142
BcuI	ACTAGT	1 cut(s)	125
BfaI	CTAG	5 cut(s)	126, 143, 164, 618, 645
BfmI	CTRYAG	1 cut(s)	426
BfuI	GTATCC	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	336
BmgBI	CACGTC	1 cut(s)	272
BmiI	GGNNCC	3 cut(s)	189, 332, 346
BmrFI	CCNGG	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	578
BsaJI	CCNNGG	3 cut(s)	334, 492, 522
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 118, 341, 527
Bse3DI	GCAATG	2 cut(s)	262, 582
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	3 cut(s)	334, 492, 522
BseGI	GGATG	3 cut(s)	49, 454, 532
BseLI	CCNNNNNNNGG	4 cut(s)	35, 118, 341, 527
BseMI	GCAATG	2 cut(s)	262, 582
BseMII	CTCAG	1 cut(s)	360
BseSI	GKGCMC	1 cut(s)	367
BshFI	GGCC	2 cut(s)	226, 531
BshNI	GGYRCC	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	367
BslI	CCNNNNNNNGG	4 cut(s)	35, 118, 341, 527
BsmAI	GTCTC	2 cut(s)	26, 142
BsmBI	CGTCTC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	226, 531
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	3 cut(s)	316, 415, 579
BspACI	CCGC	2 cut(s)	158, 172
BspANI	GGCC	2 cut(s)	226, 531
BspCNI	CTCAG	1 cut(s)	361
BspLI	GGNNCC	3 cut(s)	189, 332, 346
BspMAI	CTGCAG	1 cut(s)	430
BspPI	GGATC	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	344
BsrDI	GCAATG	2 cut(s)	262, 582
BssECI	CCNNGG	3 cut(s)	334, 492, 522
BssMI	GATC	3 cut(s)	316, 415, 579
BssNAI	GTATAC	1 cut(s)	500
BssT1I	CCWWGG	2 cut(s)	492, 522
Bst1107I	GTATAC	1 cut(s)	500
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	369
BstF5I	GGATG	3 cut(s)	49, 454, 532
BstKTI	GATC	3 cut(s)	319, 418, 582
BstMAI	GTCTC	2 cut(s)	26, 142
BstMBI	GATC	3 cut(s)	316, 415, 579
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	426
BstSLI	GKGCMC	1 cut(s)	367
BstXI	CCANNNNNNTGG	1 cut(s)	222
BstZ17I	GTATAC	1 cut(s)	500
BsuI	GTATCC	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	226, 531
BtrI	CACGTC	1 cut(s)	272
BtsCI	GGATG	3 cut(s)	49, 454, 532
BtsIMutI	CAGTG	1 cut(s)	151
Csp6I	GTAC	2 cut(s)	345, 373
CspCI	CAANNNNNGTGG	2 cut(s)	308, 343
CviAII	CATG	5 cut(s)	308, 359, 508, 533, 665
CviJI	RGCY	4 cut(s)	226, 471, 531, 621
CviKI_1	RGCY	4 cut(s)	226, 471, 531, 621
CviQI	GTAC	2 cut(s)	345, 373
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	3 cut(s)	318, 417, 581
DpnII	GATC	3 cut(s)	316, 415, 579
DraI	TTTAAA	1 cut(s)	355
EaeI	YGGCCR	2 cut(s)	224, 529
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
EciI	GGCGGA	1 cut(s)	147
Eco130I	CCWWGG	2 cut(s)	492, 522
Eco57I	CTGAAG	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	334
EcoT14I	CCWWGG	2 cut(s)	492, 522
ErhI	CCWWGG	2 cut(s)	492, 522
Esp3I	CGTCTC	1 cut(s)	26
FaeI	CATG	5 cut(s)	311, 362, 511, 536, 668
FatI	CATG	5 cut(s)	307, 358, 507, 532, 664
FblI	GTMKAC	1 cut(s)	499
FokI	GGATG	3 cut(s)	56, 461, 539
FspBI	CTAG	5 cut(s)	126, 143, 164, 618, 645
GsuI	CTGGAG	1 cut(s)	578
HaeIII	GGCC	2 cut(s)	226, 531
Hin1II	CATG	5 cut(s)	311, 362, 511, 536, 668
HinfI	GANTC	2 cut(s)	262, 538
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	2 cut(s)	365, 500
Hpy188I	TCNGA	1 cut(s)	381
Hpy8I	GTNNAC	2 cut(s)	365, 500
HpyAV	CCTTC	2 cut(s)	307, 494
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	5 cut(s)	307, 365, 428, 575, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	5 cut(s)	311, 362, 511, 536, 668
KpnI	GGTACC	1 cut(s)	348
Kzo9I	GATC	3 cut(s)	316, 415, 579
LmnI	GCTCC	3 cut(s)	114, 523, 559
MaeI	CTAG	5 cut(s)	126, 143, 164, 618, 645
MaeII	ACGT	1 cut(s)	271
MalI	GATC	3 cut(s)	318, 417, 581
MboI	GATC	3 cut(s)	316, 415, 579
MboII	GAAGA	3 cut(s)	144, 149, 479
MfeI	CAATTG	1 cut(s)	602
MhlI	GDGCHC	1 cut(s)	367
MlsI	TGGCCA	2 cut(s)	226, 531
MluCI	AATT	5 cut(s)	115, 298, 543, 548, 602
MluNI	TGGCCA	2 cut(s)	226, 531
MnlI	CCTC	2 cut(s)	284, 557
Mox20I	TGGCCA	2 cut(s)	226, 531
MscI	TGGCCA	2 cut(s)	226, 531
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	669
Msp20I	TGGCCA	2 cut(s)	226, 531
MspR9I	CCNGG	1 cut(s)	336
MunI	CAATTG	1 cut(s)	602
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	180
NdeII	GATC	3 cut(s)	316, 415, 579
NlaIII	CATG	5 cut(s)	311, 362, 511, 536, 668
NlaIV	GGNNCC	3 cut(s)	189, 332, 346
PfeI	GAWTC	2 cut(s)	262, 538
PflFI	GACNNNGTC	2 cut(s)	153, 508
PsiI	TTATAA	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	3 cut(s)	189, 332, 346
PstI	CTGCAG	1 cut(s)	430
PsyI	GACNNNGTC	2 cut(s)	153, 508
RsaI	GTAC	2 cut(s)	346, 374
RsaNI	GTAC	2 cut(s)	345, 373
RseI	CAYNNNNRTG	1 cut(s)	669
SaqAI	TTAA	1 cut(s)	354
Sau3AI	GATC	3 cut(s)	316, 415, 579
ScrFI	CCNGG	1 cut(s)	336
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	6 cut(s)	274, 370, 415, 473, 623, 650
SfcI	CTRYAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	669
SpeI	ACTAGT	1 cut(s)	125
Sse9I	AATT	5 cut(s)	115, 298, 543, 548, 602
SsiI	CCGC	2 cut(s)	158, 172
SspMI	CTAG	5 cut(s)	126, 143, 164, 618, 645
StyD4I	CCNGG	1 cut(s)	334
StyI	CCWWGG	2 cut(s)	492, 522
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	1 cut(s)	274
TasI	AATT	5 cut(s)	115, 298, 543, 548, 602
TatI	WGTACW	1 cut(s)	372
TfiI	GAWTC	2 cut(s)	262, 538
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	158
TspDTI	ATGAA	3 cut(s)	81, 81, 626
TspRI	CASTG	1 cut(s)	158
Tth111I	GACNNNGTC	2 cut(s)	153, 508
VneI	GTGCAC	1 cut(s)	363
XapI	RAATTY	2 cut(s)	115, 543
XcmI	CCANNNNNNNNNTGG	1 cut(s)	356
XmiI	GTMKAC	1 cut(s)	499
XspI	CTAG	5 cut(s)	126, 143, 164, 618, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.