FvH4_6g25710
MYB Family

Protein of unknown function (DUF3755)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007327
Physical Location & Seq
Reverse (-)
19685050 .. 19694663
9614 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25710.t4

Sequence Viewer

Length: 720 bp
ATGGCCAATCCTTCTGGGAACCATCAAGAACCGAGCCATGCCTCGTCGTCTTTCAACCCGACTAACGGAAACTCCACTCCGGTGTCAGCCCCCCCTGAGAGTTCGGGTGCCATGAAGCACAACCCGGGTATTTCTATGGATTGGACCGCAGAGGAGCAGGTCATTCTTGATGACGGGCTCGCCAATTATGCAACAGAAGCTAACATAATCCGGTATGCAAAGATAGCTATGCAGCTACAGAATAAAACCGTTCGAGATGTGGCACTGCGTTGCAGATGGATGACTAAGAAGGAGAACAGCAAGAGAAGGAAGGAAGAACTTAACTTAGCAAGGAAAAGCAAAGATAAGAAGGAAAGAGTAGTCGATACTTCAGCAAAGCCATCACACTTTACAACCCGACCCAATGTAGCTCCCTATGTTCCTCCAATCATATCTATGGACAACGATGACGGCATCTCATACAAAGCTATTGGTGGGGTTACAGGTGAGCTTCTGGAGCAGAATGCACAAGCCTTGAATCAAATTTCTGCCAATCTTCAAGCTTTCCAGATACAGGAGAACATCAACCTCTTCTGTCAGGCTCGAGATAACATCCTCAAAATTATGAATGATTTGAATGACATGCCAGACGTAATGAAGCAGATGCCACCACTTCCAGTGAAAGTGAATGAAGAGCTTGTAAACCATGTCCTTCCCCCACCTGCACATCCAATGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3755 Myb_DNA-binding

Protein Analysis

240

Amino Acids

26.53

Weight (kDa)

6.6

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3755 PF12579 180 - 213 5.9e-19 Protein of unknown function (DUF3755)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 709
Acc36I ACCTGC 2 cut(s) 148, 709
AccB1I GGYRCC 1 cut(s) 107
AciI CCGC 1 cut(s) 147
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 522
AcuI CTGAAG 1 cut(s) 354
AfiI CCNNNNNNNGG 2 cut(s) 65, 553
AgsI TTSAA 4 cut(s) 55, 517, 539, 616
AleI CACNNNNGTG 1 cut(s) 80
AluBI AGCT 8 cut(s) 200, 227, 235, 410, 467, 490, 542, 676
AluI AGCT 8 cut(s) 200, 227, 235, 410, 467, 490, 542, 676
Ama87I CYCGRG 2 cut(s) 124, 582
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 232
ApoI RAATTY 1 cut(s) 522
AspS9I GGNCC 1 cut(s) 144
AsuC2I CCSGG 2 cut(s) 125, 126
AsuHPI GGTGA 1 cut(s) 497
AvaI CYCGRG 2 cut(s) 124, 582
AvaII GGWCC 1 cut(s) 144
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 244
BccI CCATC 3 cut(s) 30, 270, 388
BceAI ACGGC 1 cut(s) 466
BcnI CCSGG 2 cut(s) 125, 126
BfmI CTRYAG 1 cut(s) 236
BfuAI ACCTGC 2 cut(s) 148, 709
BisI GCNGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 234
Bme1390I CCNGG 2 cut(s) 125, 126
Bme18I GGWCC 1 cut(s) 144
BmeT110I CYCGRG 2 cut(s) 124, 582
BmgT120I GGNCC 1 cut(s) 144
BmiI GGNNCC 2 cut(s) 20, 109
BmrFI CCNGG 2 cut(s) 125, 126
BmsI GCATC 2 cut(s) 462, 633
BpmI CTGGAG 1 cut(s) 515
BpuMI CCSGG 2 cut(s) 125, 126
BsaJI CCNNGG 1 cut(s) 124
BsaWI WCCGGW 2 cut(s) 79, 210
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 553
Bse1I ACTGG 1 cut(s) 656
BseDI CCNNGG 1 cut(s) 124
BseGI GGATG 3 cut(s) 285, 591, 706
BseLI CCNNNNNNNGG 2 cut(s) 65, 553
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 656
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 244
BsgI GTGCAG 1 cut(s) 687
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 107
BsiHKCI CYCGRG 2 cut(s) 124, 582
BsiSI CCGG 3 cut(s) 80, 125, 211
BslI CCNNNNNNNGG 2 cut(s) 65, 553
BsmI GAATGC 1 cut(s) 508
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 2 cut(s) 124, 582
Bsp1286I GDGCHC 1 cut(s) 180
BspACI CCGC 1 cut(s) 147
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 20, 109
BspMI ACCTGC 2 cut(s) 148, 709
BspQI GCTCTTC 1 cut(s) 666
BspT107I GGYRCC 1 cut(s) 107
BsrI ACTGG 1 cut(s) 656
BssECI CCNNGG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 2 cut(s) 575, 666
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 3 cut(s) 96, 285, 325
BstF5I GGATG 3 cut(s) 285, 591, 706
BstMWI GCNNNNNNNGC 4 cut(s) 188, 197, 224, 496
BstNSI RCATGY 1 cut(s) 625
BstSCI CCNGG 2 cut(s) 123, 124
BstSFI CTRYAG 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 244
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 3 cut(s) 285, 591, 706
BtsI GCAGTG 1 cut(s) 263
BtsIMutI CAGTG 2 cut(s) 263, 663
BveI ACCTGC 2 cut(s) 148, 709
Cac8I GCNNGC 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 144
Cfr9I CCCGGG 1 cut(s) 124
CviAII CATG 4 cut(s) 38, 112, 622, 686
DdeI CTNAG 3 cut(s) 96, 285, 325
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 575, 666
EarI CTCTTC 2 cut(s) 575, 666
Eco24I GRGCYC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 354
Eco88I CYCGRG 2 cut(s) 124, 582
EcoT38I GRGCYC 1 cut(s) 180
FaeI CATG 4 cut(s) 41, 115, 625, 689
FatI CATG 4 cut(s) 37, 111, 621, 685
Fnu4HI GCNGC 1 cut(s) 233
FokI GGATG 3 cut(s) 292, 578, 693
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 233
GluI GCNGC 1 cut(s) 233
GsuI CTGGAG 1 cut(s) 515
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 80, 125, 211
Hin1II CATG 4 cut(s) 41, 115, 625, 689
HindIII AAGCTT 1 cut(s) 540
HinfI GANTC 1 cut(s) 517
HpaII CCGG 3 cut(s) 80, 125, 211
HphI GGTGA 1 cut(s) 497
Hpy166II GTNNAC 1 cut(s) 682
Hpy188III TCNNGA 6 cut(s) 26, 167, 254, 494, 547, 584
Hpy8I GTNNAC 1 cut(s) 682
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 6 cut(s) 21, 283, 300, 304, 343, 701
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 630
HpyCH4V TGCA 7 cut(s) 191, 218, 232, 273, 506, 704, 715
HpyF10VI GCNNNNNNNGC 4 cut(s) 188, 197, 224, 496
HpyF3I CTNAG 3 cut(s) 96, 285, 325
HpySE526I ACGT 1 cut(s) 630
Hsp92II CATG 4 cut(s) 41, 115, 625, 689
LguI GCTCTTC 1 cut(s) 666
LmnI GCTCC 3 cut(s) 154, 415, 496
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 2 cut(s) 462, 633
MaeII ACGT 1 cut(s) 630
MaeIII GTNAC 1 cut(s) 478
MboII GAAGA 4 cut(s) 326, 527, 562, 683
MhlI GDGCHC 1 cut(s) 180
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 184, 522, 600
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 5 cut(s) 52, 145, 432, 578, 605
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 2 cut(s) 80, 434
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 80, 125, 211
MspR9I CCNGG 2 cut(s) 125, 126
Mva1269I GAATGC 1 cut(s) 508
MwoI GCNNNNNNNGC 4 cut(s) 188, 197, 224, 496
NciI CCSGG 2 cut(s) 125, 126
NlaIII CATG 4 cut(s) 41, 115, 625, 689
NlaIV GGNNCC 2 cut(s) 20, 109
NspI RCATGY 1 cut(s) 625
OliI CACNNNNGTG 1 cut(s) 80
PaeR7I CTCGAG 1 cut(s) 582
PaqCI CACCTGC 1 cut(s) 709
PciSI GCTCTTC 1 cut(s) 666
PctI GAATGC 1 cut(s) 508
PfeI GAWTC 1 cut(s) 517
PkrI GCNGC 1 cut(s) 234
PspN4I GGNNCC 2 cut(s) 20, 109
PspPI GGNCC 1 cut(s) 144
RseI CAYNNNNRTG 2 cut(s) 80, 434
SapI GCTCTTC 1 cut(s) 666
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 1 cut(s) 233
Sau96I GGNCC 1 cut(s) 144
ScrFI CCNGG 2 cut(s) 125, 126
SduI GDGCHC 1 cut(s) 180
SfaNI GCATC 2 cut(s) 462, 633
SfcI CTRYAG 1 cut(s) 236
Sfr274I CTCGAG 1 cut(s) 582
SinI GGWCC 1 cut(s) 144
SlaI CTCGAG 1 cut(s) 582
SmaI CCCGGG 1 cut(s) 126
SmiMI CAYNNNNRTG 2 cut(s) 80, 434
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
Sse9I AATT 3 cut(s) 184, 522, 600
SsiI CCGC 1 cut(s) 147
StyD4I CCNGG 2 cut(s) 123, 124
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 1 cut(s) 633
TaqI TCGA 3 cut(s) 253, 363, 583
TasI AATT 3 cut(s) 184, 522, 600
TfiI GAWTC 1 cut(s) 517
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 2 cut(s) 270, 663
TseI GCWGC 1 cut(s) 232
TspDTI ATGAA 4 cut(s) 128, 620, 650, 684
TspGWI ACGGA 1 cut(s) 81
TspMI CCCGGG 1 cut(s) 124
TspRI CASTG 2 cut(s) 270, 663
VpaK11BI GGWCC 1 cut(s) 144
XapI RAATTY 1 cut(s) 522
XceI RCATGY 1 cut(s) 625
XhoI CTCGAG 1 cut(s) 582
XmaI CCCGGG 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.