Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007327

Physical Location & Seq

Genomic Coordinates Reverse (-)

27329753 .. 27331569

Gene Structure 1817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0260100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTCTAAGGTCTTGAGCCAAGCCGATATTCAGGCTCCGTCTCATGCCCATCCAACCGATTTCTTAAGGTTGGTCTGGCCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTATGGGGTTCATTTACAGGTACAACAATAGTCTCTTGGAAGAATTTCTTCCATTAAAGTGTTCAGCAGGTCAAAGACATAGACAAGCTGGGTTTTATGGGTCTGGTTCAAGAAGAGCTTGTGTTGATAGAAGACTGAATGCCAGATGTGCTACAGCACTACAAACCAAATCTGTTACGCACCAGGCTCCAACAATCACAAGTCTTCCTCGTAAGGCAAATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3755 Myb_DNA-binding

Protein Analysis

111

Amino Acids

12.47

Weight (kDa)

10.37

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07565 AT3G07565 AT3G07565 AT3G07565
fragaria_vesca	FvH4_6g25710 FvH4_6g25710 FvH4_6g25710 FvH4_6g25710
malus_domestica	MD04G1046300.v1.1 MD13G1256700.v1.1
prunus_persica	Prupe.1G199800_v2.0.a1 Prupe.1G199800_v2.0.a1
pyrus_communis	pycom04g04020 pycom13g27240
rosa_chinensis	RchiOBHm_Chr2g0125981
rosa_laevigata	RLG00000018884
rosa_multiflora	Rmu_sc0003948.1_g000003
rosa_roxburghii	Rroxscaffold_2G00117500
rosa_rugosa	Rorug02G0260100 Rorug02G0260200
rosa_samantha	Rh2AG317900 Rh2BG326300 Rh2CG307600 Rh2DG343800 Rh2DG344200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	167
AcsI	RAATTY	2 cut(s)	152, 328
AfaI	GTAC	1 cut(s)	131
AflII	CTTAAG	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	219
AjnI	CCWGG	1 cut(s)	291
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AluBI	AGCT	2 cut(s)	197, 227
AluI	AGCT	2 cut(s)	197, 227
Alw26I	GTCTC	2 cut(s)	45, 146
AoxI	GGCC	1 cut(s)	77
ApoI	RAATTY	2 cut(s)	152, 328
Asp700I	GAANNNNTTC	2 cut(s)	153, 156
BbsI	GAAGAC	2 cut(s)	247, 305
BccI	CCATC	1 cut(s)	57
BciT130I	CCWGG	1 cut(s)	293
BcoDI	GTCTC	2 cut(s)	45, 146
BfmI	CTRYAG	1 cut(s)	261
BfrI	CTTAAG	1 cut(s)	64
BfuAI	ACCTGC	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	293
BmiI	GGNNCC	2 cut(s)	36, 297
BmrFI	CCNGG	1 cut(s)	293
BpiI	GAAGAC	2 cut(s)	247, 305
BpuEI	CTTGAG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	293
BseGI	GGATG	1 cut(s)	49
BseYI	CCCAGC	1 cut(s)	197
BshFI	GGCC	1 cut(s)	79
BsmAI	GTCTC	2 cut(s)	45, 146
BsmBI	CGTCTC	1 cut(s)	45
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	79
BspANI	GGCC	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	36, 297
BspMI	ACCTGC	1 cut(s)	167
BspQI	GCTCTTC	1 cut(s)	217
BspTI	CTTAAG	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	217
BstAFI	CTTAAG	1 cut(s)	64
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	49
BstMAI	GTCTC	2 cut(s)	45, 146
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 257
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	1 cut(s)	261
BstV2I	GAAGAC	2 cut(s)	247, 305
BsuRI	GGCC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	49
BveI	ACCTGC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	7 cut(s)	18, 23, 35, 79, 197, 227, 296
CviKI_1	RGCY	7 cut(s)	18, 23, 35, 79, 197, 227, 296
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	1 cut(s)	47
FaiI	YATR	4 cut(s)	45, 113, 189, 207
FalI	AAGNNNNNCTT	4 cut(s)	141, 173, 211, 243
FatI	CATG	1 cut(s)	43
FokI	GGATG	1 cut(s)	36
GsaI	CCCAGC	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	79
Hin1II	CATG	1 cut(s)	47
Hpy188III	TCNNGA	2 cut(s)	13, 219
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 257
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	47
LguI	GCTCTTC	1 cut(s)	217
LmnI	GCTCC	2 cut(s)	40, 301
LpnPI	CCDG	9 cut(s)	17, 61, 112, 162, 183, 198, 265, 278, 305
MaeIII	GTNAC	1 cut(s)	283
MboII	GAAGA	5 cut(s)	149, 161, 234, 252, 305
MluCI	AATT	2 cut(s)	152, 328
MmeI	TCCRAC	2 cut(s)	77, 323
MnlI	CCTC	1 cut(s)	327
MroXI	GAANNNNTTC	2 cut(s)	153, 156
MseI	TTAA	3 cut(s)	65, 164, 334
MslI	CAYNNNNRTG	1 cut(s)	166
MspCI	CTTAAG	1 cut(s)	64
MspR9I	CCNGG	1 cut(s)	293
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	105, 257
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	2 cut(s)	36, 297
PciSI	GCTCTTC	1 cut(s)	217
PctI	GAATGC	1 cut(s)	253
PdmI	GAANNNNTTC	2 cut(s)	153, 156
Psp6I	CCWGG	1 cut(s)	291
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	2 cut(s)	36, 297
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	166
SapI	GCTCTTC	1 cut(s)	217
SaqAI	TTAA	3 cut(s)	65, 164, 334
ScrFI	CCNGG	1 cut(s)	293
SetI	ASST	6 cut(s)	12, 71, 131, 181, 199, 229
SfcI	CTRYAG	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	166
SmlI	CTYRAG	2 cut(s)	13, 64
SmoI	CTYRAG	2 cut(s)	13, 64
Sse9I	AATT	2 cut(s)	152, 328
StyD4I	CCNGG	1 cut(s)	291
TasI	AATT	2 cut(s)	152, 328
Tru1I	TTAA	3 cut(s)	65, 164, 334
Tru9I	TTAA	3 cut(s)	65, 164, 334
TspDTI	ATGAA	1 cut(s)	109
TspGWI	ACGGA	1 cut(s)	27
Vha464I	CTTAAG	1 cut(s)	64
XapI	RAATTY	2 cut(s)	152, 328
XmnI	GAANNNNTTC	2 cut(s)	153, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.