Rroxscaffold_2G00117500
MYB Family

Protein of unknown function (DUF3755)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007327
Physical Location & Seq
Forward (+)
45586234 .. 45595553
9320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00117500.1

Sequence Viewer

Length: 720 bp
ATGGCCAACCCTTCTGGGAACCATCAAGAACCGAGCCATGCCTCGTCGTCTTTCAACGGCACCAACCCGACTAACGGAAACTCCACTCCTGTGTCGGCACCCGAGACCATGGCCATGAAGCACAACCCGGGTATTTCTATGGATTGGACCGCAGAGGAGCAGGCCATTCTTGATGATGGGCTCGCCAATTATGCAACAGAAGCTAACATAATCCGGTATGCGAAGATAGCTATGCAGCTACAGAATAAGACGGTTCGAGATGTGGCATTGCGTTGCAGATGGATGACTAAAAAGGAGAATAGCAAGAGAAGGAAGGAAGAACATAACTTAGCAAGGAAAAGCAAAGACAAAAAGGAAAGAGTAGTCGATACTTCAGCAAAGCCGTCACACTTTACAAACCGACCCAGTGTTGCTCCCTATACTCCGATAATATCTATGGACAATGATGATGGCATCTCATACAAAGCTATTGGTGGGGTTACAGGCGAGCTTTTGGAGCAGAATGCGCAAGCCTTGAATCAAATTTCTACCAATCTTCAAGCTTTCCAGATACAGGAGAACATCAACCTCTTCTGCCAGGCTCGAGATAACATCCTCAAAATAATGAATGACTTGAATGACATGCCAGACGTAATGAAGCAGATGCCACCACTTCCAGTGAAAGTAAATGAAGAGCTCGTAAACCACGTCCTCCCCCCACCTGCACATCAAATGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3755 Myb_DNA-binding

Protein Analysis

239

Amino Acids

26.66

Weight (kDa)

6.66

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3755 PF12579 181 - 214 6e-19 Protein of unknown function (DUF3755)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 709
Acc16I TGCGCA 1 cut(s) 507
Acc36I ACCTGC 1 cut(s) 709
AccB1I GGYRCC 2 cut(s) 59, 97
AciI CCGC 1 cut(s) 150
AcoI YGGCCR 2 cut(s) 3, 111
AcsI RAATTY 1 cut(s) 522
AcuI CTGAAG 1 cut(s) 357
AfiI CCNNNNNNNGG 2 cut(s) 74, 553
AgsI TTSAA 4 cut(s) 55, 517, 539, 616
AjiI CACGTC 1 cut(s) 688
AjnI CCWGG 1 cut(s) 576
AleI CACNNNNGTG 1 cut(s) 89
AluBI AGCT 7 cut(s) 203, 230, 238, 467, 490, 542, 676
AluI AGCT 7 cut(s) 203, 230, 238, 467, 490, 542, 676
Alw21I GWGCWC 1 cut(s) 678
Alw26I GTCTC 1 cut(s) 98
Ama87I CYCGRG 3 cut(s) 101, 127, 582
AoxI GGCC 3 cut(s) 3, 111, 162
ApeKI GCWGC 1 cut(s) 235
ApoI RAATTY 1 cut(s) 522
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 1 cut(s) 147
AsuC2I CCSGG 2 cut(s) 128, 129
AvaI CYCGRG 3 cut(s) 101, 127, 582
AvaII GGWCC 1 cut(s) 147
BalI TGGCCA 2 cut(s) 5, 113
BanI GGYRCC 2 cut(s) 59, 97
BanII GRGCYC 2 cut(s) 183, 678
Bbv12I GWGCWC 1 cut(s) 678
BbvI GCAGC 1 cut(s) 247
BccI CCATC 4 cut(s) 30, 170, 273, 443
BceAI ACGGC 2 cut(s) 73, 367
BciT130I CCWGG 1 cut(s) 578
BcnI CCSGG 2 cut(s) 128, 129
BcoDI GTCTC 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 239
BfuAI ACCTGC 1 cut(s) 709
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
Bme1390I CCNGG 3 cut(s) 128, 129, 578
Bme18I GGWCC 1 cut(s) 147
BmeT110I CYCGRG 3 cut(s) 101, 127, 582
BmgBI CACGTC 1 cut(s) 688
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 3 cut(s) 20, 61, 99
BmrFI CCNGG 3 cut(s) 128, 129, 578
BmrI ACTGGG 1 cut(s) 399
BmsI GCATC 2 cut(s) 462, 633
BmuI ACTGGG 1 cut(s) 399
BpuMI CCSGG 2 cut(s) 128, 129
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 2 cut(s) 108, 127
BsaWI WCCGGW 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 553
Bse1I ACTGG 2 cut(s) 405, 656
Bse3DI GCAATG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 578
BseDI CCNNGG 2 cut(s) 108, 127
BseGI GGATG 2 cut(s) 288, 591
BseLI CCNNNNNNNGG 2 cut(s) 74, 553
BseMI GCAATG 1 cut(s) 266
BseNI ACTGG 2 cut(s) 405, 656
BseRI GAGGAG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 247
BsgI GTGCAG 1 cut(s) 687
BshFI GGCC 3 cut(s) 5, 113, 164
BshNI GGYRCC 2 cut(s) 59, 97
BsiHKAI GWGCWC 1 cut(s) 678
BsiHKCI CYCGRG 3 cut(s) 101, 127, 582
BsiSI CCGG 2 cut(s) 128, 214
BslI CCNNNNNNNGG 2 cut(s) 74, 553
BsmAI GTCTC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 508
BsnI GGCC 3 cut(s) 5, 113, 164
Bso31I GGTCTC 1 cut(s) 98
BsoBI CYCGRG 3 cut(s) 101, 127, 582
Bsp1286I GDGCHC 2 cut(s) 183, 678
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 1 cut(s) 150
BspANI GGCC 3 cut(s) 5, 113, 164
BspLI GGNNCC 3 cut(s) 20, 61, 99
BspMI ACCTGC 1 cut(s) 709
BspQI GCTCTTC 1 cut(s) 666
BspT107I GGYRCC 2 cut(s) 59, 97
BspTNI GGTCTC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 266
BsrI ACTGG 2 cut(s) 405, 656
BssECI CCNNGG 2 cut(s) 108, 127
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 578
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 2 cut(s) 575, 666
BstC8I GCNNGC 4 cut(s) 162, 183, 488, 510
BstDEI CTNAG 1 cut(s) 328
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 2 cut(s) 288, 591
BstHHI GCGC 1 cut(s) 508
BstMAI GTCTC 1 cut(s) 98
BstMWI GCNNNNNNNGC 5 cut(s) 191, 200, 227, 496, 505
BstNI CCWGG 1 cut(s) 578
BstNSI RCATGY 1 cut(s) 625
BstSCI CCNGG 3 cut(s) 126, 127, 576
BstSFI CTRYAG 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 247
BsuRI GGCC 3 cut(s) 5, 113, 164
BtgI CCRYGG 1 cut(s) 108
BtrI CACGTC 1 cut(s) 688
BtsCI GGATG 2 cut(s) 288, 591
BtsIMutI CAGTG 2 cut(s) 412, 663
BveI ACCTGC 1 cut(s) 709
Cac8I GCNNGC 4 cut(s) 162, 183, 488, 510
CfoI GCGC 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 147
Cfr9I CCCGGG 1 cut(s) 127
CviAII CATG 4 cut(s) 38, 109, 115, 622
DdeI CTNAG 1 cut(s) 328
EaeI YGGCCR 2 cut(s) 3, 111
Eam1104I CTCTTC 2 cut(s) 575, 666
EarI CTCTTC 2 cut(s) 575, 666
Ecl136II GAGCTC 1 cut(s) 676
Eco130I CCWWGG 1 cut(s) 108
Eco24I GRGCYC 2 cut(s) 183, 678
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 147
Eco53kI GAGCTC 1 cut(s) 676
Eco57I CTGAAG 1 cut(s) 357
Eco88I CYCGRG 3 cut(s) 101, 127, 582
EcoICRI GAGCTC 1 cut(s) 676
EcoRII CCWGG 1 cut(s) 576
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 2 cut(s) 183, 678
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 4 cut(s) 41, 112, 118, 625
FatI CATG 4 cut(s) 37, 108, 114, 621
Fnu4HI GCNGC 1 cut(s) 236
FokI GGATG 2 cut(s) 295, 578
FriOI GRGCYC 2 cut(s) 183, 678
Fsp4HI GCNGC 1 cut(s) 236
FspI TGCGCA 1 cut(s) 507
GlaI GCGC 1 cut(s) 507
GluI GCNGC 1 cut(s) 236
HaeIII GGCC 3 cut(s) 5, 113, 164
HapII CCGG 2 cut(s) 128, 214
HhaI GCGC 1 cut(s) 508
Hin1II CATG 4 cut(s) 41, 112, 118, 625
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HindIII AAGCTT 1 cut(s) 540
HinfI GANTC 1 cut(s) 517
HpaII CCGG 2 cut(s) 128, 214
Hpy166II GTNNAC 1 cut(s) 682
Hpy188I TCNGA 1 cut(s) 426
Hpy188III TCNNGA 5 cut(s) 26, 170, 257, 547, 584
Hpy8I GTNNAC 1 cut(s) 682
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 3 cut(s) 21, 303, 307
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 2 cut(s) 630, 687
HpyCH4V TGCA 5 cut(s) 194, 235, 276, 704, 715
HpyF10VI GCNNNNNNNGC 5 cut(s) 191, 200, 227, 496, 505
HpyF3I CTNAG 1 cut(s) 328
HpySE526I ACGT 2 cut(s) 630, 687
Hsp92II CATG 4 cut(s) 41, 112, 118, 625
HspAI GCGC 1 cut(s) 506
LguI GCTCTTC 1 cut(s) 666
LmnI GCTCC 3 cut(s) 157, 418, 496
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 2 cut(s) 462, 633
MaeII ACGT 2 cut(s) 630, 687
MaeIII GTNAC 2 cut(s) 384, 478
MboII GAAGA 5 cut(s) 235, 329, 527, 562, 683
MhlI GDGCHC 2 cut(s) 183, 678
MlsI TGGCCA 2 cut(s) 5, 113
MluCI AATT 2 cut(s) 187, 522
MluNI TGGCCA 2 cut(s) 5, 113
MnlI CCTC 5 cut(s) 52, 148, 578, 605, 701
Mox20I TGGCCA 2 cut(s) 5, 113
MscI TGGCCA 2 cut(s) 5, 113
MslI CAYNNNNRTG 2 cut(s) 89, 113
Msp20I TGGCCA 2 cut(s) 5, 113
MspI CCGG 2 cut(s) 128, 214
MspR9I CCNGG 3 cut(s) 128, 129, 578
Mva1269I GAATGC 1 cut(s) 508
MvaI CCWGG 1 cut(s) 578
MwoI GCNNNNNNNGC 5 cut(s) 191, 200, 227, 496, 505
NciI CCSGG 2 cut(s) 128, 129
NcoI CCATGG 1 cut(s) 108
NlaIII CATG 4 cut(s) 41, 112, 118, 625
NlaIV GGNNCC 3 cut(s) 20, 61, 99
NmuCI GTSAC 1 cut(s) 384
NsbI TGCGCA 1 cut(s) 507
NspI RCATGY 1 cut(s) 625
OliI CACNNNNGTG 1 cut(s) 89
PaeR7I CTCGAG 1 cut(s) 582
PaqCI CACCTGC 1 cut(s) 709
PciSI GCTCTTC 1 cut(s) 666
PcsI WCGNNNNNNNCGW 1 cut(s) 684
PctI GAATGC 1 cut(s) 508
PfeI GAWTC 1 cut(s) 517
PkrI GCNGC 1 cut(s) 237
Psp124BI GAGCTC 1 cut(s) 678
Psp6I CCWGG 1 cut(s) 576
PspGI CCWGG 1 cut(s) 576
PspN4I GGNNCC 3 cut(s) 20, 61, 99
PspPI GGNCC 1 cut(s) 147
RseI CAYNNNNRTG 2 cut(s) 89, 113
SacI GAGCTC 1 cut(s) 678
SapI GCTCTTC 1 cut(s) 666
SatI GCNGC 1 cut(s) 236
Sau96I GGNCC 1 cut(s) 147
ScrFI CCNGG 3 cut(s) 128, 129, 578
SduI GDGCHC 2 cut(s) 183, 678
SfaNI GCATC 2 cut(s) 462, 633
SfcI CTRYAG 1 cut(s) 239
Sfr274I CTCGAG 1 cut(s) 582
SinI GGWCC 1 cut(s) 147
SlaI CTCGAG 1 cut(s) 582
SmaI CCCGGG 1 cut(s) 129
SmiMI CAYNNNNRTG 2 cut(s) 89, 113
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
Sse9I AATT 2 cut(s) 187, 522
SsiI CCGC 1 cut(s) 150
SstI GAGCTC 1 cut(s) 678
StyD4I CCNGG 3 cut(s) 126, 127, 576
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 2 cut(s) 633, 690
TaqI TCGA 3 cut(s) 256, 366, 583
TasI AATT 2 cut(s) 187, 522
TfiI GAWTC 1 cut(s) 517
TscAI CASTG 2 cut(s) 412, 663
TseFI GTSAC 1 cut(s) 384
TseI GCWGC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 384
TspDTI ATGAA 4 cut(s) 131, 620, 650, 684
TspGWI ACGGA 1 cut(s) 90
TspMI CCCGGG 1 cut(s) 127
TspRI CASTG 2 cut(s) 412, 663
VpaK11BI GGWCC 1 cut(s) 147
XapI RAATTY 1 cut(s) 522
XceI RCATGY 1 cut(s) 625
XhoI CTCGAG 1 cut(s) 582
XmaI CCCGGG 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.