Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007327

Physical Location & Seq

Genomic Coordinates Reverse (-)

46225807 .. 46235213

Gene Structure 9407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG343800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCCAACCCGTCTGGGAACCATCAAGAACCGAGCCATGCCTCGTCGTCTTTCAACGGCACCAACCCGACTAACGGAAACTCCACTCCTGTGTCGGCACCCGAGACCATGGCCATGAAGCACAACCCGGGTATTTCTATGGATTGGACCGCAGAGGAGCAGGCCATTCTTGATGATGGGCTCGCCAATTATGCAACAGAAGCTAACATAATCCGGTATGCGAAGATAGCTATGCAGCTACAGAATAAGACGGTTCGAGATGTGGCATTGCGTTGCAGATGGATGACTAAAAAGGAGAACAGCAAGAGAAGGAAGGAAGAACATAACTTAGCAAGGAAAAGCAAAGACAAAAAGGAAAGAGTAGTCGATACTTCAGCAAAGCCGTCACACTTTACAAACCGACCCAGTGTTGCTCCCTATACTCCTCCGATAATATCTATGGACAATGATGATGGCATCTCATACAAAGCTATTGGTGGGGTTACAGGCGAGCTTTTGGAGCAGAATGCACAAGCCTTGAATCAAATTTCTACCAATCTTCAAGCTTTCCAGGTAGATCTAATCATCATGTTTTTTTATTATTATTATTTTTTTAATGTTCTTCTCATCGTTTTAGCTATTAATTTAACATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3755 Myb_DNA-binding

Protein Analysis

211

Amino Acids

23.6

Weight (kDa)

7.77

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07565 AT3G07565 AT3G07565 AT3G07565
fragaria_vesca	FvH4_6g25710 FvH4_6g25710 FvH4_6g25710 FvH4_6g25710
malus_domestica	MD04G1046300.v1.1 MD13G1256700.v1.1
prunus_persica	Prupe.1G199800_v2.0.a1 Prupe.1G199800_v2.0.a1
pyrus_communis	pycom04g04020 pycom13g27240
rosa_chinensis	RchiOBHm_Chr2g0125981
rosa_laevigata	RLG00000018884
rosa_multiflora	Rmu_sc0003948.1_g000003
rosa_roxburghii	Rroxscaffold_2G00117500
rosa_rugosa	Rorug02G0260100 Rorug02G0260200
rosa_samantha	Rh2AG317900 Rh2BG326300 Rh2CG307600 Rh2DG343800 Rh2DG344200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	59, 97
AciI	CCGC	1 cut(s)	150
AcoI	YGGCCR	2 cut(s)	3, 111
AcsI	RAATTY	1 cut(s)	525
AcuI	CTGAAG	1 cut(s)	357
AfiI	CCNNNNNNNGG	1 cut(s)	74
AflIII	ACRYGT	1 cut(s)	629
AgsI	TTSAA	3 cut(s)	55, 520, 542
AjnI	CCWGG	1 cut(s)	549
AleI	CACNNNNGTG	1 cut(s)	89
AluBI	AGCT	7 cut(s)	203, 230, 238, 470, 493, 545, 617
AluI	AGCT	7 cut(s)	203, 230, 238, 470, 493, 545, 617
Alw26I	GTCTC	1 cut(s)	98
Ama87I	CYCGRG	2 cut(s)	101, 127
AoxI	GGCC	3 cut(s)	3, 111, 162
ApeKI	GCWGC	1 cut(s)	235
ApoI	RAATTY	1 cut(s)	525
AseI	ATTAAT	1 cut(s)	621
AspS9I	GGNCC	1 cut(s)	147
AsuC2I	CCSGG	2 cut(s)	128, 129
AvaI	CYCGRG	2 cut(s)	101, 127
AvaII	GGWCC	1 cut(s)	147
BalI	TGGCCA	2 cut(s)	5, 113
BanI	GGYRCC	2 cut(s)	59, 97
BanII	GRGCYC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	4 cut(s)	30, 170, 273, 446
BceAI	ACGGC	2 cut(s)	73, 367
BciT130I	CCWGG	1 cut(s)	551
BcnI	CCSGG	2 cut(s)	128, 129
BcoDI	GTCTC	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	239
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme1390I	CCNGG	3 cut(s)	128, 129, 551
Bme18I	GGWCC	1 cut(s)	147
BmeT110I	CYCGRG	2 cut(s)	101, 127
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	3 cut(s)	20, 61, 99
BmrFI	CCNGG	3 cut(s)	128, 129, 551
BmrI	ACTGGG	1 cut(s)	399
BmsI	GCATC	1 cut(s)	465
BmuI	ACTGGG	1 cut(s)	399
BpuMI	CCSGG	2 cut(s)	128, 129
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	108, 127
BsaWI	WCCGGW	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	405
Bse3DI	GCAATG	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	551
BseDI	CCNNGG	2 cut(s)	108, 127
BseGI	GGATG	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	405
BseRI	GAGGAG	2 cut(s)	170, 414
BseXI	GCAGC	1 cut(s)	247
BshFI	GGCC	3 cut(s)	5, 113, 164
BshNI	GGYRCC	2 cut(s)	59, 97
BsiHKCI	CYCGRG	2 cut(s)	101, 127
BsiSI	CCGG	2 cut(s)	128, 214
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	3 cut(s)	5, 113, 164
Bso31I	GGTCTC	1 cut(s)	98
BsoBI	CYCGRG	2 cut(s)	101, 127
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	556
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	3 cut(s)	5, 113, 164
BspLI	GGNNCC	3 cut(s)	20, 61, 99
BspT107I	GGYRCC	2 cut(s)	59, 97
BspTNI	GGTCTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	405
BssECI	CCNNGG	2 cut(s)	108, 127
BssMI	GATC	1 cut(s)	556
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	551
Bst4CI	ACNGT	1 cut(s)	253
BstC8I	GCNNGC	3 cut(s)	162, 183, 491
BstDEI	CTNAG	1 cut(s)	328
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	288
BstKTI	GATC	1 cut(s)	559
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	556
BstMWI	GCNNNNNNNGC	4 cut(s)	191, 200, 227, 499
BstNI	CCWGG	1 cut(s)	551
BstNSI	RCATGY	1 cut(s)	633
BstSCI	CCNGG	3 cut(s)	126, 127, 549
BstSFI	CTRYAG	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
BsuRI	GGCC	3 cut(s)	5, 113, 164
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	3 cut(s)	162, 183, 491
Cfr13I	GGNCC	1 cut(s)	147
Cfr9I	CCCGGG	1 cut(s)	127
CviAII	CATG	5 cut(s)	38, 109, 115, 568, 630
DdeI	CTNAG	1 cut(s)	328
DpnI	GATC	1 cut(s)	558
DpnII	GATC	1 cut(s)	556
EaeI	YGGCCR	2 cut(s)	3, 111
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	357
Eco88I	CYCGRG	2 cut(s)	101, 127
EcoRII	CCWGG	1 cut(s)	549
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	5 cut(s)	41, 112, 118, 571, 633
FatI	CATG	5 cut(s)	37, 108, 114, 567, 629
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	1 cut(s)	295
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	1 cut(s)	236
GluI	GCNGC	1 cut(s)	236
HaeIII	GGCC	3 cut(s)	5, 113, 164
HapII	CCGG	2 cut(s)	128, 214
Hin1II	CATG	5 cut(s)	41, 112, 118, 571, 633
HindIII	AAGCTT	1 cut(s)	543
HinfI	GANTC	1 cut(s)	520
HpaII	CCGG	2 cut(s)	128, 214
Hpy188I	TCNGA	1 cut(s)	429
Hpy188III	TCNNGA	3 cut(s)	26, 170, 257
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	303, 307
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4V	TGCA	4 cut(s)	194, 235, 276, 509
HpyF10VI	GCNNNNNNNGC	4 cut(s)	191, 200, 227, 499
HpyF3I	CTNAG	1 cut(s)	328
Hsp92II	CATG	5 cut(s)	41, 112, 118, 571, 633
Kzo9I	GATC	1 cut(s)	556
LmnI	GCTCC	3 cut(s)	157, 418, 499
LpnPI	CCDG	8 cut(s)	102, 141, 146, 227, 418, 471, 536, 563
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	1 cut(s)	465
MaeIII	GTNAC	2 cut(s)	384, 481
MalI	GATC	1 cut(s)	558
MboI	GATC	1 cut(s)	556
MboII	GAAGA	4 cut(s)	235, 329, 530, 593
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	1 cut(s)	183
MlsI	TGGCCA	2 cut(s)	5, 113
MluCI	AATT	3 cut(s)	187, 525, 622
MluNI	TGGCCA	2 cut(s)	5, 113
MnlI	CCTC	3 cut(s)	52, 148, 435
Mox20I	TGGCCA	2 cut(s)	5, 113
MscI	TGGCCA	2 cut(s)	5, 113
MseI	TTAA	3 cut(s)	594, 621, 626
MslI	CAYNNNNRTG	2 cut(s)	89, 113
Msp20I	TGGCCA	2 cut(s)	5, 113
MspI	CCGG	2 cut(s)	128, 214
MspR9I	CCNGG	3 cut(s)	128, 129, 551
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	551
MwoI	GCNNNNNNNGC	4 cut(s)	191, 200, 227, 499
NciI	CCSGG	2 cut(s)	128, 129
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	1 cut(s)	556
NlaIII	CATG	5 cut(s)	41, 112, 118, 571, 633
NlaIV	GGNNCC	3 cut(s)	20, 61, 99
NmuCI	GTSAC	1 cut(s)	384
NspI	RCATGY	1 cut(s)	633
OliI	CACNNNNGTG	1 cut(s)	89
PciI	ACATGT	1 cut(s)	629
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	520
PkrI	GCNGC	1 cut(s)	237
PscI	ACATGT	1 cut(s)	629
PshBI	ATTAAT	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	549
PspGI	CCWGG	1 cut(s)	549
PspN4I	GGNNCC	3 cut(s)	20, 61, 99
PspPI	GGNCC	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	556
RseI	CAYNNNNRTG	2 cut(s)	89, 113
SaqAI	TTAA	3 cut(s)	594, 621, 626
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	1 cut(s)	556
Sau96I	GGNCC	1 cut(s)	147
ScrFI	CCNGG	3 cut(s)	128, 129, 551
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	8 cut(s)	205, 232, 240, 472, 495, 547, 555, 619
SfaNI	GCATC	1 cut(s)	465
SfcI	CTRYAG	1 cut(s)	239
SinI	GGWCC	1 cut(s)	147
SmaI	CCCGGG	1 cut(s)	129
SmiMI	CAYNNNNRTG	2 cut(s)	89, 113
Sse9I	AATT	3 cut(s)	187, 525, 622
SsiI	CCGC	1 cut(s)	150
StyD4I	CCNGG	3 cut(s)	126, 127, 549
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	253
TaqI	TCGA	2 cut(s)	256, 366
TasI	AATT	3 cut(s)	187, 525, 622
TfiI	GAWTC	1 cut(s)	520
Tru1I	TTAA	3 cut(s)	594, 621, 626
Tru9I	TTAA	3 cut(s)	594, 621, 626
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	384
TseI	GCWGC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	384
TspDTI	ATGAA	1 cut(s)	131
TspGWI	ACGGA	1 cut(s)	90
TspMI	CCCGGG	1 cut(s)	127
TspRI	CASTG	1 cut(s)	412
VpaK11BI	GGWCC	1 cut(s)	147
VspI	ATTAAT	1 cut(s)	621
XapI	RAATTY	1 cut(s)	525
XceI	RCATGY	1 cut(s)	633
XmaI	CCCGGG	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.