Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007327

Physical Location & Seq

Genomic Coordinates Reverse (-)

3603230 .. 3610268

Gene Structure 7039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04020.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCGAACCCATCTGGGAACCACCAAGAACCTAGCCACACTTCGTCGTCCTTCAACGGCACCAACCCGAGTAACGGAAACTCCGTGCCGGTGTCGGCTCCGGAGAGTTCCGGCACCGCCATGGCCATGAAACATAACCCGGGTATTTCTATGGATTGGAGCGCAGAGGAGCAGGCAATTCTTGAAGATGGACTCACCAAATATCCAACAGAATCAAACGTAAGCCGGTATGCAAAGATAGCCATGCAGCTGCAGAATAAGACTGTCCGAGATGTGGCTTTACGTTGCAGATGGATGACTAAAAAGGAAATCAGCAAGAGAAGGAAGGAAGAACATAACTTAACAAGGAAAAGCAAGGATAAAAAGGAGAGAGTAAATGATACTTCAGCAAAGCCATCTCACTTTGCTGCCCGGCCTAATGTTGCTCCCTATGCTCCCCCAATGATTACTATGGACAACGATGATGGTATCCCATACAAAGCTATTGGTGGTATTACAGGAGAGCTTCTGGAGCAAAATGCCCAAGCCTTGAATCAAATCTCAGCAAACCTTGCAGCTTTCCAGATACAGGAGAACGTCAACCTCTTCTGCCAAACTCGAGATAACATCCTCAAGATCATGAATGACTTGAATGACATGCCAGACGTAATGAAGCAGATGCCCCCACTTCCGGTGAAAATGAATGAAGAGCTAGCAACCCATGTGGGCATACCACCCCATCAGATGCAATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3755 Myb_DNA-binding

Protein Analysis

245

Amino Acids

27.04

Weight (kDa)

7.06

Isoelectric Point (pI)

52.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07565 AT3G07565 AT3G07565 AT3G07565
fragaria_vesca	FvH4_6g25710 FvH4_6g25710 FvH4_6g25710 FvH4_6g25710
malus_domestica	MD04G1046300.v1.1 MD13G1256700.v1.1
prunus_persica	Prupe.1G199800_v2.0.a1 Prupe.1G199800_v2.0.a1
pyrus_communis	pycom04g04020 pycom13g27240
rosa_chinensis	RchiOBHm_Chr2g0125981
rosa_laevigata	RLG00000018884
rosa_multiflora	Rmu_sc0003948.1_g000003
rosa_roxburghii	Rroxscaffold_2G00117500
rosa_rugosa	Rorug02G0260100 Rorug02G0260200
rosa_samantha	Rh2AG317900 Rh2BG326300 Rh2CG307600 Rh2DG343800 Rh2DG344200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	59, 113
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	1 cut(s)	117
AcoI	YGGCCR	1 cut(s)	123
AcuI	CTGAAG	1 cut(s)	369
AfiI	CCNNNNNNNGG	4 cut(s)	74, 274, 568, 670
AgsI	TTSAA	4 cut(s)	55, 185, 532, 631
AluBI	AGCT	5 cut(s)	250, 482, 505, 557, 691
AluI	AGCT	5 cut(s)	250, 482, 505, 557, 691
Ama87I	CYCGRG	3 cut(s)	67, 139, 597
Aor13HI	TCCGGA	1 cut(s)	100
AoxI	GGCC	2 cut(s)	123, 413
ApeKI	GCWGC	4 cut(s)	247, 250, 407, 554
AspLEI	GCGC	1 cut(s)	164
AsuC2I	CCSGG	3 cut(s)	140, 141, 412
AsuHPI	GGTGA	2 cut(s)	187, 685
AsuNHI	GCTAGC	1 cut(s)	691
AvaI	CYCGRG	3 cut(s)	67, 139, 597
BalI	TGGCCA	1 cut(s)	125
BanI	GGYRCC	2 cut(s)	59, 113
BbvI	GCAGC	4 cut(s)	237, 259, 394, 566
BccI	CCATC	6 cut(s)	19, 182, 285, 403, 458, 726
BceAI	ACGGC	1 cut(s)	73
BciVI	GTATCC	1 cut(s)	479
BcnI	CCSGG	3 cut(s)	140, 141, 412
BfaI	CTAG	2 cut(s)	33, 692
BfmI	CTRYAG	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	479
BisI	GCNGC	4 cut(s)	248, 251, 408, 555
BlsI	GCNGC	4 cut(s)	249, 252, 409, 556
Bme1390I	CCNGG	3 cut(s)	140, 141, 412
BmeT110I	CYCGRG	3 cut(s)	67, 139, 597
BmiI	GGNNCC	4 cut(s)	20, 61, 99, 115
BmrFI	CCNGG	3 cut(s)	140, 141, 412
BmsI	GCATC	2 cut(s)	648, 714
BmtI	GCTAGC	1 cut(s)	695
BpmI	CTGGAG	1 cut(s)	530
BpuEI	CTTGAG	1 cut(s)	596
BpuMI	CCSGG	3 cut(s)	140, 141, 412
BsaJI	CCNNGG	2 cut(s)	120, 139
BsaWI	WCCGGW	2 cut(s)	100, 670
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 274, 568, 670
Bse118I	RCCGGY	2 cut(s)	88, 225
BseAI	TCCGGA	1 cut(s)	100
BseDI	CCNNGG	2 cut(s)	120, 139
BseGI	GGATG	2 cut(s)	300, 606
BseLI	CCNNNNNNNGG	4 cut(s)	74, 274, 568, 670
BseMII	CTCAG	1 cut(s)	555
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	4 cut(s)	237, 259, 394, 566
BshFI	GGCC	2 cut(s)	125, 415
BshNI	GGYRCC	2 cut(s)	59, 113
BsiHKCI	CYCGRG	3 cut(s)	67, 139, 597
BsiSI	CCGG	7 cut(s)	89, 101, 111, 140, 226, 412, 671
BslI	CCNNNNNNNGG	4 cut(s)	74, 274, 568, 670
BsnI	GGCC	2 cut(s)	125, 415
BsoBI	CYCGRG	3 cut(s)	67, 139, 597
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	615
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	2 cut(s)	125, 415
BspCNI	CTCAG	1 cut(s)	554
BspEI	TCCGGA	1 cut(s)	100
BspHI	TCATGA	1 cut(s)	618
BspLI	GGNNCC	4 cut(s)	20, 61, 99, 115
BspMAI	CTGCAG	1 cut(s)	255
BspOI	GCTAGC	1 cut(s)	695
BspQI	GCTCTTC	1 cut(s)	681
BspT107I	GGYRCC	2 cut(s)	59, 113
BsrFI	RCCGGY	2 cut(s)	88, 225
BssAI	RCCGGY	2 cut(s)	88, 225
BssECI	CCNNGG	2 cut(s)	120, 139
BssMI	GATC	1 cut(s)	615
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	2 cut(s)	590, 681
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstC8I	GCNNGC	2 cut(s)	174, 693
BstDEI	CTNAG	1 cut(s)	541
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	2 cut(s)	300, 606
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	1 cut(s)	618
BstMBI	GATC	1 cut(s)	615
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 431, 511, 551
BstNSI	RCATGY	1 cut(s)	640
BstSCI	CCNGG	3 cut(s)	138, 139, 410
BstSFI	CTRYAG	1 cut(s)	251
BstV1I	GCAGC	4 cut(s)	237, 259, 394, 566
BsuI	GTATCC	1 cut(s)	479
BsuRI	GGCC	2 cut(s)	125, 415
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	2 cut(s)	300, 606
Cac8I	GCNNGC	2 cut(s)	174, 693
CciI	TCATGA	1 cut(s)	618
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	2 cut(s)	88, 225
Cfr9I	CCCGGG	1 cut(s)	139
CspCI	CAANNNNNGTGG	2 cut(s)	684, 719
CviAII	CATG	6 cut(s)	121, 127, 244, 619, 637, 701
DdeI	CTNAG	1 cut(s)	541
DpnI	GATC	1 cut(s)	617
DpnII	GATC	1 cut(s)	615
EaeI	YGGCCR	1 cut(s)	123
Eam1104I	CTCTTC	2 cut(s)	590, 681
EarI	CTCTTC	2 cut(s)	590, 681
Eco130I	CCWWGG	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	369
Eco88I	CYCGRG	3 cut(s)	67, 139, 597
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	6 cut(s)	124, 130, 247, 622, 640, 704
FatI	CATG	6 cut(s)	120, 126, 243, 618, 636, 700
Fnu4HI	GCNGC	4 cut(s)	248, 251, 408, 555
FokI	GGATG	2 cut(s)	307, 593
Fsp4HI	GCNGC	4 cut(s)	248, 251, 408, 555
FspBI	CTAG	2 cut(s)	33, 692
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	4 cut(s)	248, 251, 408, 555
GsuI	CTGGAG	1 cut(s)	530
HaeIII	GGCC	2 cut(s)	125, 415
HapII	CCGG	7 cut(s)	89, 101, 111, 140, 226, 412, 671
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	6 cut(s)	124, 130, 247, 622, 640, 704
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HinfI	GANTC	3 cut(s)	192, 212, 532
HpaII	CCGG	7 cut(s)	89, 101, 111, 140, 226, 412, 671
HphI	GGTGA	2 cut(s)	187, 685
Hpy166II	GTNNAC	1 cut(s)	580
Hpy188I	TCNGA	2 cut(s)	269, 723
Hpy188III	TCNNGA	8 cut(s)	101, 182, 509, 562, 599, 613, 619, 732
Hpy8I	GTNNAC	1 cut(s)	580
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	3 cut(s)	61, 315, 319
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	4 cut(s)	219, 283, 576, 645
HpyCH4V	TGCA	6 cut(s)	233, 247, 253, 288, 554, 727
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 431, 511, 551
HpyF3I	CTNAG	1 cut(s)	541
HpySE526I	ACGT	4 cut(s)	219, 283, 576, 645
Hsp92II	CATG	6 cut(s)	124, 130, 247, 622, 640, 704
HspAI	GCGC	1 cut(s)	162
Kpn2I	TCCGGA	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	615
LguI	GCTCTTC	1 cut(s)	681
LmnI	GCTCC	6 cut(s)	103, 159, 169, 430, 439, 511
Lsp1109I	GCAGC	4 cut(s)	237, 259, 394, 566
LweI	GCATC	2 cut(s)	648, 714
MaeI	CTAG	2 cut(s)	33, 692
MaeII	ACGT	4 cut(s)	219, 283, 576, 645
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	1 cut(s)	617
MboI	GATC	1 cut(s)	615
MboII	GAAGA	4 cut(s)	197, 341, 577, 698
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	1 cut(s)	177
MluNI	TGGCCA	1 cut(s)	125
MlyI	GAGTC	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	3 cut(s)	160, 593, 620
Mox20I	TGGCCA	1 cut(s)	125
MroI	TCCGGA	1 cut(s)	100
MscI	TGGCCA	1 cut(s)	125
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	2 cut(s)	119, 125
Msp20I	TGGCCA	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	7 cut(s)	89, 101, 111, 140, 226, 412, 671
MspR9I	CCNGG	3 cut(s)	140, 141, 412
MwoI	GCNNNNNNNGC	4 cut(s)	239, 431, 511, 551
NciI	CCSGG	3 cut(s)	140, 141, 412
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	1 cut(s)	615
NheI	GCTAGC	1 cut(s)	691
NlaIII	CATG	6 cut(s)	124, 130, 247, 622, 640, 704
NlaIV	GGNNCC	4 cut(s)	20, 61, 99, 115
NspI	RCATGY	1 cut(s)	640
PaeR7I	CTCGAG	1 cut(s)	597
PagI	TCATGA	1 cut(s)	618
PciSI	GCTCTTC	1 cut(s)	681
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	2 cut(s)	212, 532
PkrI	GCNGC	4 cut(s)	249, 252, 409, 556
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
PspN4I	GGNNCC	4 cut(s)	20, 61, 99, 115
PstI	CTGCAG	1 cut(s)	255
PvuII	CAGCTG	1 cut(s)	250
RseI	CAYNNNNRTG	2 cut(s)	119, 125
SapI	GCTCTTC	1 cut(s)	681
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	4 cut(s)	248, 251, 408, 555
Sau3AI	GATC	1 cut(s)	615
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	3 cut(s)	140, 141, 412
SfaNI	GCATC	2 cut(s)	648, 714
SfcI	CTRYAG	1 cut(s)	251
Sfr274I	CTCGAG	1 cut(s)	597
SlaI	CTCGAG	1 cut(s)	597
SmaI	CCCGGG	1 cut(s)	141
SmiMI	CAYNNNNRTG	2 cut(s)	119, 125
SmlI	CTYRAG	2 cut(s)	597, 611
SmoI	CTYRAG	2 cut(s)	597, 611
Sse9I	AATT	1 cut(s)	177
SsiI	CCGC	1 cut(s)	117
SspMI	CTAG	2 cut(s)	33, 692
StyD4I	CCNGG	3 cut(s)	138, 139, 410
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	4 cut(s)	222, 286, 579, 648
TaqI	TCGA	1 cut(s)	598
TasI	AATT	1 cut(s)	177
TfiI	GAWTC	2 cut(s)	212, 532
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TseI	GCWGC	4 cut(s)	247, 250, 407, 554
TspDTI	ATGAA	5 cut(s)	143, 635, 665, 695, 699
TspGWI	ACGGA	2 cut(s)	73, 90
TspMI	CCCGGG	1 cut(s)	139
XceI	RCATGY	1 cut(s)	640
XhoI	CTCGAG	1 cut(s)	597
XmaI	CCCGGG	1 cut(s)	139
XspI	CTAG	2 cut(s)	33, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.