Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007327

Physical Location & Seq

Genomic Coordinates Forward (+)

28501661 .. 28511357

Gene Structure 9697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1256700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCGAACCCATCTGGGAACCACCAAGAACCGAGCCACGCCTCCTCGTCCTTCAACGGCAACAACCCAAGTAATGGAAACTCCACGCCGGTTTCGGTGCCGGAGAGTTCTGGCGCCGCCATGACCATGAAACACAACCCGGGTATTTCTATGGATTGGAGCGCAGAGGAGCAGGCAATTCTCGAAGATGGACTCGCCAAATATGCAACAGAATCAAACATAATCCGGTATGCAAAGATAGCCATGCTGCTGCAGAATAAGACTGTCCGAGATGTGGCTTTACGTTGCAGATGGATGACTAAAAAAGAAAACAGCAAGAGAAGGAAGGAAGACCATAACTTATCAAGGAAAAACAAGGATAAAAAGGAGAGAGTAAATGATACTTCAGCGAAGCCATCTCACCCTGCTGGGCGGCCTAATGTTGCTCCCTATGCTCCCCCAATGATTACTATGGACAATGATGATGGTATCCCATATAAAGCCATTGGCGGTATTACAGGAGAGCTTCTGGAGCAAAATGCCCAAGCCTTGAATCAAATTTCAGCAAACCTTTCAGCTTTCCAGATACAGGAGAACATCAACCTCTTCTGCCAAAGTCGAGATAACAACATCAACCTCTTCTGCCAAACTCGAGACAACATCCTCAAAATTATGAATGACTTGAATGACATGCCAGACGTAATGAAGCAGATGCCACCACTTCCAGTGAAAATGAATGAAGAGCTAGCAACCCATGTCGGCATCCCACCCCATCAGATGCAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3755 Myb_DNA-binding

Protein Analysis

256

Amino Acids

28.29

Weight (kDa)

7.06

Isoelectric Point (pI)

59.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3755	PF12579	186 - 202	8e-07	Protein of unknown function (DUF3755)
DUF3755	PF12579	202 - 230	3.5e-15	Protein of unknown function (DUF3755)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07565 AT3G07565 AT3G07565 AT3G07565
fragaria_vesca	FvH4_6g25710 FvH4_6g25710 FvH4_6g25710 FvH4_6g25710
malus_domestica	MD04G1046300.v1.1 MD13G1256700.v1.1
prunus_persica	Prupe.1G199800_v2.0.a1 Prupe.1G199800_v2.0.a1
pyrus_communis	pycom04g04020 pycom13g27240
rosa_chinensis	RchiOBHm_Chr2g0125981
rosa_laevigata	RLG00000018884
rosa_multiflora	Rmu_sc0003948.1_g000003
rosa_roxburghii	Rroxscaffold_2G00117500
rosa_rugosa	Rorug02G0260100 Rorug02G0260200
rosa_samantha	Rh2AG317900 Rh2BG326300 Rh2CG307600 Rh2DG343800 Rh2DG344200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	97, 113
AccB7I	CCANNNNNTGG	1 cut(s)	74
AciI	CCGC	3 cut(s)	117, 412, 489
AcsI	RAATTY	1 cut(s)	537
AcuI	CTGAAG	1 cut(s)	369
AcyI	GRCGYC	1 cut(s)	114
AfiI	CCNNNNNNNGG	3 cut(s)	74, 274, 568
AgsI	TTSAA	3 cut(s)	55, 532, 664
AluBI	AGCT	3 cut(s)	505, 557, 724
AluI	AGCT	3 cut(s)	505, 557, 724
Alw26I	GTCTC	1 cut(s)	627
Ama87I	CYCGRG	2 cut(s)	139, 630
AoxI	GGCC	1 cut(s)	413
ApeKI	GCWGC	2 cut(s)	247, 250
ApoI	RAATTY	1 cut(s)	537
AspLEI	GCGC	2 cut(s)	116, 164
AsuC2I	CCSGG	2 cut(s)	140, 141
AsuHPI	GGTGA	1 cut(s)	392
AsuNHI	GCTAGC	1 cut(s)	724
AvaI	CYCGRG	2 cut(s)	139, 630
BanI	GGYRCC	2 cut(s)	97, 113
BbsI	GAAGAC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	234, 237
BccI	CCATC	6 cut(s)	19, 182, 285, 403, 458, 759
BceAI	ACGGC	1 cut(s)	73
BciVI	GTATCC	1 cut(s)	479
BcnI	CCSGG	2 cut(s)	140, 141
BcoDI	GTCTC	1 cut(s)	627
BfaI	CTAG	1 cut(s)	725
BfmI	CTRYAG	1 cut(s)	251
BfoI	RGCGCY	1 cut(s)	117
BfuI	GTATCC	1 cut(s)	479
BisI	GCNGC	4 cut(s)	117, 248, 251, 413
BlsI	GCNGC	4 cut(s)	118, 249, 252, 414
Bme1390I	CCNGG	2 cut(s)	140, 141
BmeT110I	CYCGRG	2 cut(s)	139, 630
BmiI	GGNNCC	3 cut(s)	20, 99, 115
BmrFI	CCNGG	2 cut(s)	140, 141
BmsI	GCATC	3 cut(s)	681, 747, 750
BmtI	GCTAGC	1 cut(s)	728
BpiI	GAAGAC	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	530
BpuMI	CCSGG	2 cut(s)	140, 141
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	139
BsaWI	WCCGGW	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 274, 568
Bse118I	RCCGGY	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	704
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	3 cut(s)	300, 639, 741
BseLI	CCNNNNNNNGG	3 cut(s)	74, 274, 568
BseNI	ACTGG	1 cut(s)	704
BseRI	GAGGAG	2 cut(s)	34, 182
BseXI	GCAGC	2 cut(s)	234, 237
BseYI	CCCAGC	1 cut(s)	407
BshFI	GGCC	1 cut(s)	415
BshNI	GGYRCC	2 cut(s)	97, 113
BsiHKCI	CYCGRG	2 cut(s)	139, 630
BsiSI	CCGG	4 cut(s)	89, 101, 140, 226
BslI	CCNNNNNNNGG	3 cut(s)	74, 274, 568
BsmAI	GTCTC	1 cut(s)	627
BsnI	GGCC	1 cut(s)	415
BsoBI	CYCGRG	2 cut(s)	139, 630
BspACI	CCGC	3 cut(s)	117, 412, 489
BspANI	GGCC	1 cut(s)	415
BspHI	TCATGA	1 cut(s)	764
BspLI	GGNNCC	3 cut(s)	20, 99, 115
BspMAI	CTGCAG	1 cut(s)	255
BspOI	GCTAGC	1 cut(s)	728
BspQI	GCTCTTC	1 cut(s)	714
BspT107I	GGYRCC	2 cut(s)	97, 113
BsrFI	RCCGGY	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	704
BssAI	RCCGGY	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	139
BssNI	GRCGYC	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	3 cut(s)	590, 623, 714
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	174, 726
BstF5I	GGATG	3 cut(s)	300, 639, 741
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	2 cut(s)	116, 164
BstMAI	GTCTC	1 cut(s)	627
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 239, 431, 511
BstNSI	RCATGY	1 cut(s)	673
BstSCI	CCNGG	2 cut(s)	138, 139
BstSFI	CTRYAG	1 cut(s)	251
BstV1I	GCAGC	2 cut(s)	234, 237
BstV2I	GAAGAC	1 cut(s)	336
BsuI	GTATCC	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	415
BtsCI	GGATG	3 cut(s)	300, 639, 741
BtsIMutI	CAGTG	1 cut(s)	711
Cac8I	GCNNGC	2 cut(s)	174, 726
CciI	TCATGA	1 cut(s)	764
CfoI	GCGC	2 cut(s)	116, 164
Cfr10I	RCCGGY	1 cut(s)	88
Cfr9I	CCCGGG	1 cut(s)	139
CviAII	CATG	6 cut(s)	121, 127, 244, 670, 734, 765
DinI	GGCGCC	1 cut(s)	115
Eam1104I	CTCTTC	3 cut(s)	590, 623, 714
EarI	CTCTTC	3 cut(s)	590, 623, 714
Eco57I	CTGAAG	1 cut(s)	369
Eco88I	CYCGRG	2 cut(s)	139, 630
EgeI	GGCGCC	1 cut(s)	115
EheI	GGCGCC	1 cut(s)	115
FaeI	CATG	6 cut(s)	124, 130, 247, 673, 737, 768
FatI	CATG	6 cut(s)	120, 126, 243, 669, 733, 764
Fnu4HI	GCNGC	4 cut(s)	117, 248, 251, 413
FokI	GGATG	3 cut(s)	307, 626, 728
Fsp4HI	GCNGC	4 cut(s)	117, 248, 251, 413
FspBI	CTAG	1 cut(s)	725
GlaI	GCGC	2 cut(s)	115, 163
GluI	GCNGC	4 cut(s)	117, 248, 251, 413
GsaI	CCCAGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	530
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	415
HapII	CCGG	4 cut(s)	89, 101, 140, 226
HhaI	GCGC	2 cut(s)	116, 164
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	6 cut(s)	124, 130, 247, 673, 737, 768
Hin6I	GCGC	2 cut(s)	114, 162
HinP1I	GCGC	2 cut(s)	114, 162
HinfI	GANTC	3 cut(s)	192, 212, 532
HpaII	CCGG	4 cut(s)	89, 101, 140, 226
HphI	GGTGA	1 cut(s)	392
Hpy188I	TCNGA	2 cut(s)	269, 756
Hpy188III	TCNNGA	6 cut(s)	182, 509, 562, 599, 632, 765
HpyAV	CCTTC	3 cut(s)	61, 315, 319
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	2 cut(s)	283, 678
HpyCH4V	TGCA	5 cut(s)	206, 233, 253, 288, 760
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 239, 431, 511
HpySE526I	ACGT	2 cut(s)	283, 678
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	6 cut(s)	124, 130, 247, 673, 737, 768
HspAI	GCGC	2 cut(s)	114, 162
KasI	GGCGCC	1 cut(s)	113
LguI	GCTCTTC	1 cut(s)	714
LmnI	GCTCC	5 cut(s)	159, 169, 430, 439, 511
Lsp1109I	GCAGC	2 cut(s)	234, 237
LweI	GCATC	3 cut(s)	681, 747, 750
MaeI	CTAG	1 cut(s)	725
MaeII	ACGT	2 cut(s)	283, 678
MboII	GAAGA	5 cut(s)	197, 341, 577, 610, 731
MluCI	AATT	3 cut(s)	177, 537, 648
Mly113I	GGCGCC	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	186
MnlI	CCTC	6 cut(s)	52, 55, 160, 593, 626, 653
MslI	CAYNNNNRTG	1 cut(s)	125
MspI	CCGG	4 cut(s)	89, 101, 140, 226
MspR9I	CCNGG	2 cut(s)	140, 141
MwoI	GCNNNNNNNGC	4 cut(s)	203, 239, 431, 511
NarI	GGCGCC	1 cut(s)	114
NciI	CCSGG	2 cut(s)	140, 141
NheI	GCTAGC	1 cut(s)	724
NlaIII	CATG	6 cut(s)	124, 130, 247, 673, 737, 768
NlaIV	GGNNCC	3 cut(s)	20, 99, 115
NspI	RCATGY	1 cut(s)	673
PaeR7I	CTCGAG	1 cut(s)	630
PagI	TCATGA	1 cut(s)	764
PciSI	GCTCTTC	1 cut(s)	714
PfeI	GAWTC	2 cut(s)	212, 532
PflMI	CCANNNNNTGG	1 cut(s)	74
PkrI	GCNGC	4 cut(s)	118, 249, 252, 414
PleI	GAGTC	1 cut(s)	186
PluTI	GGCGCC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	407
PspN4I	GGNNCC	3 cut(s)	20, 99, 115
PstI	CTGCAG	1 cut(s)	255
RseI	CAYNNNNRTG	1 cut(s)	125
SapI	GCTCTTC	1 cut(s)	714
SatI	GCNGC	4 cut(s)	117, 248, 251, 413
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	2 cut(s)	140, 141
SetI	ASST	8 cut(s)	286, 507, 552, 559, 585, 618, 681, 726
SfaNI	GCATC	3 cut(s)	681, 747, 750
SfcI	CTRYAG	1 cut(s)	251
SfoI	GGCGCC	1 cut(s)	115
Sfr274I	CTCGAG	1 cut(s)	630
SlaI	CTCGAG	1 cut(s)	630
SmaI	CCCGGG	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	630
SmoI	CTYRAG	1 cut(s)	630
Sse9I	AATT	3 cut(s)	177, 537, 648
SsiI	CCGC	3 cut(s)	117, 412, 489
SspDI	GGCGCC	1 cut(s)	113
SspMI	CTAG	1 cut(s)	725
StyD4I	CCNGG	2 cut(s)	138, 139
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	2 cut(s)	286, 681
TaqI	TCGA	3 cut(s)	183, 598, 631
TasI	AATT	3 cut(s)	177, 537, 648
TauI	GCSGC	2 cut(s)	119, 415
TfiI	GAWTC	2 cut(s)	212, 532
TscAI	CASTG	1 cut(s)	711
TseI	GCWGC	2 cut(s)	247, 250
TspDTI	ATGAA	5 cut(s)	143, 668, 698, 728, 732
TspMI	CCCGGG	1 cut(s)	139
TspRI	CASTG	1 cut(s)	711
Van91I	CCANNNNNTGG	1 cut(s)	74
XapI	RAATTY	1 cut(s)	537
XceI	RCATGY	1 cut(s)	673
XhoI	CTCGAG	1 cut(s)	630
XmaI	CCCGGG	1 cut(s)	139
XspI	CTAG	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.