Rh2DG344200
MYB Family

Protein of unknown function (DUF3755)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0007327
Physical Location & Seq
Reverse (-)
46820229 .. 46829250
9022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG344200.1

Sequence Viewer

Length: 744 bp
ATGGCCAACCCGTCTGGGAACCATCAAGAACCGAGCCATGCCTCGTCGTCTTTCAACGGCACCAACCCGACTAACGGAAACTCCACTCCTGTGTCGGCACCCGAGACCATGGCCATGAAGCACAACCCGGGTATTTCTATGGATTGGACCGCAGAGGAGCAGGCCATTCTTGATGATGGGCTCGCCAATTATGCAACAGAAGCTAACATAATCCGGTATGCGAAGATAGCTATGCAGCTACAGAATAAGACGGTTCGAGATGTGGCATTGCGTTGCAGATGGATGACTAAAAAGGAGAACAGCAAGAGAAGGAAGGAAGAACATAACTTAGCAAGGAAAAGCAAAGACAAAAAGGAAAGAGTAGTCGATACTTCAGCAAAGCCGTCACACTTTACAAACCGACCCAGTGTTGCTCCCTATACTCCTCCGATAATATCTATGGACAATGATGATGGCATCTCATACAAAGCTATTGGTGGGGTTACAGGCGAGCTTTTGGAGCAGAATGCACAAGCCTTGAATCAAATTTCTACCAATCTTCAAGCTTTCCAGATACAGGAGAACATCAACCTCTTCTGCCAGGCTCGAGATAACATCCTCAAAATAATGAATGATTGCATAGCCATTTGGAGTTGCTTGTTTTATCTGTATATTCCTAGAAGTACCGTCTCGAGCAATTACAGATGCAATTGCATTGGTATCTATATATGTACTTGTCTTGCTGTCTGTGATCCCATTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3755 Myb_DNA-binding

Protein Analysis

247

Amino Acids

27.55

Weight (kDa)

8.04

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3755 PF12579 182 - 205 7.6e-12 Protein of unknown function (DUF3755)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 59, 97
AciI CCGC 1 cut(s) 150
AclWI GGATC 1 cut(s) 725
AcoI YGGCCR 2 cut(s) 3, 111
AcsI RAATTY 1 cut(s) 525
AcuI CTGAAG 1 cut(s) 357
AfaI GTAC 2 cut(s) 664, 712
AfiI CCNNNNNNNGG 2 cut(s) 74, 556
AgsI TTSAA 3 cut(s) 55, 520, 542
AjnI CCWGG 1 cut(s) 579
AleI CACNNNNGTG 1 cut(s) 89
AluBI AGCT 6 cut(s) 203, 230, 238, 470, 493, 545
AluI AGCT 6 cut(s) 203, 230, 238, 470, 493, 545
Alw26I GTCTC 2 cut(s) 98, 673
AlwI GGATC 1 cut(s) 725
Ama87I CYCGRG 4 cut(s) 101, 127, 585, 670
AoxI GGCC 3 cut(s) 3, 111, 162
ApeKI GCWGC 1 cut(s) 235
ApoI RAATTY 1 cut(s) 525
AspS9I GGNCC 1 cut(s) 147
AsuC2I CCSGG 2 cut(s) 128, 129
AvaI CYCGRG 4 cut(s) 101, 127, 585, 670
AvaII GGWCC 1 cut(s) 147
BalI TGGCCA 2 cut(s) 5, 113
BanI GGYRCC 2 cut(s) 59, 97
BanII GRGCYC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 247
BccI CCATC 4 cut(s) 30, 170, 273, 446
BceAI ACGGC 2 cut(s) 73, 367
BciT130I CCWGG 1 cut(s) 581
BcnI CCSGG 2 cut(s) 128, 129
BcoDI GTCTC 2 cut(s) 98, 673
BfaI CTAG 1 cut(s) 657
BfmI CTRYAG 1 cut(s) 239
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
Bme1390I CCNGG 3 cut(s) 128, 129, 581
Bme18I GGWCC 1 cut(s) 147
BmeT110I CYCGRG 4 cut(s) 101, 127, 585, 670
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 3 cut(s) 20, 61, 99
BmrFI CCNGG 3 cut(s) 128, 129, 581
BmrI ACTGGG 1 cut(s) 399
BmsI GCATC 2 cut(s) 465, 674
BmuI ACTGGG 1 cut(s) 399
BpuMI CCSGG 2 cut(s) 128, 129
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 2 cut(s) 108, 127
BsaWI WCCGGW 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 556
Bse1I ACTGG 1 cut(s) 405
Bse3DI GCAATG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 581
BseDI CCNNGG 2 cut(s) 108, 127
BseGI GGATG 2 cut(s) 288, 594
BseLI CCNNNNNNNGG 2 cut(s) 74, 556
BseMI GCAATG 1 cut(s) 266
BseNI ACTGG 1 cut(s) 405
BseRI GAGGAG 2 cut(s) 170, 414
BseXI GCAGC 1 cut(s) 247
BshFI GGCC 3 cut(s) 5, 113, 164
BshNI GGYRCC 2 cut(s) 59, 97
BsiHKCI CYCGRG 4 cut(s) 101, 127, 585, 670
BsiSI CCGG 2 cut(s) 128, 214
BslI CCNNNNNNNGG 2 cut(s) 74, 556
BsmAI GTCTC 2 cut(s) 98, 673
BsmBI CGTCTC 1 cut(s) 673
BsmI GAATGC 1 cut(s) 511
BsnI GGCC 3 cut(s) 5, 113, 164
Bso31I GGTCTC 1 cut(s) 98
BsoBI CYCGRG 4 cut(s) 101, 127, 585, 670
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 1 cut(s) 730
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 1 cut(s) 150
BspANI GGCC 3 cut(s) 5, 113, 164
BspLI GGNNCC 3 cut(s) 20, 61, 99
BspPI GGATC 1 cut(s) 725
BspT107I GGYRCC 2 cut(s) 59, 97
BspTNI GGTCTC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 266
BsrI ACTGG 1 cut(s) 405
BssECI CCNNGG 2 cut(s) 108, 127
BssMI GATC 1 cut(s) 730
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 581
Bst4CI ACNGT 2 cut(s) 253, 667
Bst6I CTCTTC 1 cut(s) 578
BstC8I GCNNGC 3 cut(s) 162, 183, 491
BstDEI CTNAG 1 cut(s) 328
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 2 cut(s) 288, 594
BstKTI GATC 1 cut(s) 733
BstMAI GTCTC 2 cut(s) 98, 673
BstMBI GATC 1 cut(s) 730
BstMWI GCNNNNNNNGC 4 cut(s) 191, 200, 227, 499
BstNI CCWGG 1 cut(s) 581
BstSCI CCNGG 3 cut(s) 126, 127, 579
BstSFI CTRYAG 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 247
BsuRI GGCC 3 cut(s) 5, 113, 164
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 2 cut(s) 288, 594
BtsIMutI CAGTG 1 cut(s) 412
Cac8I GCNNGC 3 cut(s) 162, 183, 491
Cfr13I GGNCC 1 cut(s) 147
Cfr9I CCCGGG 1 cut(s) 127
Csp6I GTAC 2 cut(s) 663, 711
CviAII CATG 3 cut(s) 38, 109, 115
CviQI GTAC 2 cut(s) 663, 711
DdeI CTNAG 1 cut(s) 328
DpnI GATC 1 cut(s) 732
DpnII GATC 1 cut(s) 730
EaeI YGGCCR 2 cut(s) 3, 111
Eam1104I CTCTTC 1 cut(s) 578
EarI CTCTTC 1 cut(s) 578
Eco130I CCWWGG 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 357
Eco88I CYCGRG 4 cut(s) 101, 127, 585, 670
EcoRII CCWGG 1 cut(s) 579
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 673
FaeI CATG 3 cut(s) 41, 112, 118
FatI CATG 3 cut(s) 37, 108, 114
Fnu4HI GCNGC 1 cut(s) 236
FokI GGATG 2 cut(s) 295, 581
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 236
FspBI CTAG 1 cut(s) 657
GluI GCNGC 1 cut(s) 236
HaeIII GGCC 3 cut(s) 5, 113, 164
HapII CCGG 2 cut(s) 128, 214
Hin1II CATG 3 cut(s) 41, 112, 118
HindIII AAGCTT 1 cut(s) 543
HinfI GANTC 1 cut(s) 520
HpaII CCGG 2 cut(s) 128, 214
Hpy188I TCNGA 1 cut(s) 429
Hpy188III TCNNGA 6 cut(s) 26, 170, 257, 550, 587, 670
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 2 cut(s) 303, 307
HpyCH4III ACNGT 2 cut(s) 253, 667
HpyCH4V TGCA 7 cut(s) 194, 235, 276, 509, 618, 687, 693
HpyF10VI GCNNNNNNNGC 4 cut(s) 191, 200, 227, 499
HpyF3I CTNAG 1 cut(s) 328
Hsp92II CATG 3 cut(s) 41, 112, 118
Kzo9I GATC 1 cut(s) 730
LmnI GCTCC 3 cut(s) 157, 418, 499
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 2 cut(s) 465, 674
MaeI CTAG 1 cut(s) 657
MaeIII GTNAC 2 cut(s) 384, 481
MalI GATC 1 cut(s) 732
MboI GATC 1 cut(s) 730
MboII GAAGA 4 cut(s) 235, 329, 530, 565
MfeI CAATTG 1 cut(s) 688
MhlI GDGCHC 1 cut(s) 183
MlsI TGGCCA 2 cut(s) 5, 113
MluCI AATT 4 cut(s) 187, 525, 676, 688
MluNI TGGCCA 2 cut(s) 5, 113
MnlI CCTC 5 cut(s) 52, 148, 435, 581, 608
Mox20I TGGCCA 2 cut(s) 5, 113
MscI TGGCCA 2 cut(s) 5, 113
MslI CAYNNNNRTG 2 cut(s) 89, 113
Msp20I TGGCCA 2 cut(s) 5, 113
MspI CCGG 2 cut(s) 128, 214
MspR9I CCNGG 3 cut(s) 128, 129, 581
MunI CAATTG 1 cut(s) 688
Mva1269I GAATGC 1 cut(s) 511
MvaI CCWGG 1 cut(s) 581
MwoI GCNNNNNNNGC 4 cut(s) 191, 200, 227, 499
NciI CCSGG 2 cut(s) 128, 129
NcoI CCATGG 1 cut(s) 108
NdeII GATC 1 cut(s) 730
NlaIII CATG 3 cut(s) 41, 112, 118
NlaIV GGNNCC 3 cut(s) 20, 61, 99
NmuCI GTSAC 1 cut(s) 384
OliI CACNNNNGTG 1 cut(s) 89
PaeR7I CTCGAG 2 cut(s) 585, 670
PctI GAATGC 1 cut(s) 511
PfeI GAWTC 1 cut(s) 520
PkrI GCNGC 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 579
PspGI CCWGG 1 cut(s) 579
PspN4I GGNNCC 3 cut(s) 20, 61, 99
PspPI GGNCC 1 cut(s) 147
RsaI GTAC 2 cut(s) 664, 712
RsaNI GTAC 2 cut(s) 663, 711
RseI CAYNNNNRTG 2 cut(s) 89, 113
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 1 cut(s) 730
Sau96I GGNCC 1 cut(s) 147
ScrFI CCNGG 3 cut(s) 128, 129, 581
SduI GDGCHC 1 cut(s) 183
SetI ASST 7 cut(s) 205, 232, 240, 472, 495, 547, 573
SfaNI GCATC 2 cut(s) 465, 674
SfcI CTRYAG 1 cut(s) 239
Sfr274I CTCGAG 2 cut(s) 585, 670
SinI GGWCC 1 cut(s) 147
SlaI CTCGAG 2 cut(s) 585, 670
SmaI CCCGGG 1 cut(s) 129
SmiMI CAYNNNNRTG 2 cut(s) 89, 113
SmlI CTYRAG 2 cut(s) 585, 670
SmoI CTYRAG 2 cut(s) 585, 670
Sse9I AATT 4 cut(s) 187, 525, 676, 688
SsiI CCGC 1 cut(s) 150
SspMI CTAG 1 cut(s) 657
StyD4I CCNGG 3 cut(s) 126, 127, 579
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 253, 667
TaqI TCGA 4 cut(s) 256, 366, 586, 671
TasI AATT 4 cut(s) 187, 525, 676, 688
TatI WGTACW 1 cut(s) 710
TfiI GAWTC 1 cut(s) 520
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 1 cut(s) 384
TseI GCWGC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 384
TspDTI ATGAA 2 cut(s) 131, 623
TspGWI ACGGA 1 cut(s) 90
TspMI CCCGGG 1 cut(s) 127
TspRI CASTG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 147
XapI RAATTY 1 cut(s) 525
XhoI CTCGAG 2 cut(s) 585, 670
XmaI CCCGGG 1 cut(s) 127
XspI CTAG 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.