FvH4_6g26610

Aminotransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
20308865 .. 20313074
4210 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26610.t1

Sequence Viewer

Length: 1293 bp
ATGGAGAATGGGAATGATTATTCCAATCAGAAATGGAATTTCCGAGGGAACGAAGAACTGAACACGGCCTCAATCTCCGTCCGTGGTGTTCTCAACACCTTAGCAAAGAATCTCAACTGCGACGATCCACGACCCACCATTATGCTGGGCCGCGGCGACCCGACTGAGTTTGCTGCATTCCGGACGGCTCCTCCCGCCGCCGATGCCGTCTCGGATGCTCTCCAGTCCTTCAAGTTCAACTCTTATTGTCCGACCGGCGGTGTTTTAGAAGCAAGAAGAGCTATTGCAGAGTATCTCTCCCGTGACCTCTCAGGCCAGTTATTGCCTGAGGATGTATATCTCACTGTGGGTTGCACACAAGCAATCGAGATCATAGTGTCTGTTCTTGCACGTCCTGGTGCCAATATTCTGCTTCCCAAGCCTGGTTACCCACAGTATGAGGCTCGAGCTTCTTTCGACCATCTTGAAGTTCGCCATTTTGATCTTATTCCTGAAGAAGGTTGGGAGGTGGATCTTGATTCTGTTGAAGCTCTTGCGGATAACAACACTGCTGCTATTGTTGTTATTAACCCTAGCAATCCATGCGGAAATGTCTTCACATACCAGCATTTGGAAAAGATTGCAGAAACAGCAAAGAAACTTGGGATCTTTGTAATATCGGATGAAGTTTATGGCGGTCTGGCTTTTGGCAGTAACCCTTTTGTGCCCATGGGGAAGTTCAGTTCAATTGTACCAGTTCTTACGCTTGGTTCTATATCAAAGACATGGATTGTTCCTGGCTGGAGACTTGGTTGGATTGTGAAAAGTGATCCCAATGGCATCCTTGAAAAAACTGGGATCGTTGACAGCATTAAGAACTATCTTGACATCACTTGTGATCCAGCAACCTTTGTTCAGGGAGCAATACCTCAAATCATTAAGCGCACAAAAGAGAGTTTTTTCTCTAACATAATTGGCATAATGAGAGAAGCTGTGGATATGTTATATGACATGATTAATGAAATCTCATGCCTTACTTGCCCAAATAAACCTGAAGGATCCATGGTCGTATTGGTAAAACTTGATTTATCAGCACTTGAAGGCATTGATGATGATGTACAGTTTTGTCTTGAGCTGTCCAAAGAGGAGTCTGTGATTGTTCTGCCAGGTGTCACTGTTGGACTGAAAAACTGGCTCCGCATTACTTTTGCTGTTGAACTTGAAGTACTTAAAGAAGGCCTTCAAAGGATCAAAGCCTTCTCACAAAGACATGCCAAGAAGCAATTAGGTGATGATGAGTTAATTTCCATGTAG

Protein Analysis

431

Amino Acids

47.28

Weight (kDa)

4.8

Isoelectric Point (pI)

31.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 47 - 410 6.7e-56 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 398
AccB7I CCANNNNNTGG 1 cut(s) 610
AccII CGCG 1 cut(s) 153
AccIII TCCGGA 1 cut(s) 180
AciI CCGC 9 cut(s) 151, 153, 195, 198, 258, 536, 585, 675, 1177
AclWI GGATC 9 cut(s) 119, 519, 653, 803, 845, 872, 1032, 1045, 1235
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 2 cut(s) 513, 1053
AfaI GTAC 3 cut(s) 732, 1098, 1206
AfiI CCNNNNNNNGG 4 cut(s) 257, 422, 497, 610
AjiI CACGTC 1 cut(s) 392
AjnI CCWGG 4 cut(s) 394, 421, 775, 1144
AloI GAACNNNNNNTCC 2 cut(s) 706, 738
AluBI AGCT 5 cut(s) 281, 449, 530, 971, 1114
AluI AGCT 5 cut(s) 281, 449, 530, 971, 1114
Alw26I GTCTC 2 cut(s) 214, 778
AlwI GGATC 9 cut(s) 119, 519, 653, 803, 845, 872, 1032, 1045, 1235
Ama87I CYCGRG 1 cut(s) 444
Aor13HI TCCGGA 1 cut(s) 180
AoxI GGCC 4 cut(s) 66, 148, 313, 1216
ApeKI GCWGC 2 cut(s) 173, 551
ApoI RAATTY 1 cut(s) 37
AseI ATTAAT 1 cut(s) 996
Asp700I GAANNNNTTC 1 cut(s) 1218
AspLEI GCGC 1 cut(s) 924
AspS9I GGNCC 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 1280
AvaI CYCGRG 1 cut(s) 444
AxyI CCTNAGG 1 cut(s) 327
BaeGI GKGCMC 1 cut(s) 708
BamHI GGATCC 1 cut(s) 1037
BanI GGYRCC 1 cut(s) 398
BbsI GAAGAC 1 cut(s) 586
BbvI GCAGC 2 cut(s) 160, 538
BccI CCATC 1 cut(s) 468
BceAI ACGGC 3 cut(s) 81, 191, 201
BciT130I CCWGG 4 cut(s) 396, 423, 777, 1146
BcoDI GTCTC 2 cut(s) 214, 778
BfaI CTAG 1 cut(s) 573
BisI GCNGC 5 cut(s) 151, 154, 174, 198, 552
BlsI GCNGC 5 cut(s) 152, 155, 175, 199, 553
BmcAI AGTACT 1 cut(s) 1206
Bme1390I CCNGG 4 cut(s) 396, 423, 777, 1146
BmeT110I CYCGRG 1 cut(s) 444
BmgBI CACGTC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 4 cut(s) 189, 400, 1039, 1175
BmrFI CCNGG 4 cut(s) 396, 423, 777, 1146
BmrI ACTGGG 1 cut(s) 843
BmsI GCATC 3 cut(s) 193, 205, 828
BmuI ACTGGG 1 cut(s) 843
BpiI GAAGAC 1 cut(s) 586
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpmI CTGGAG 2 cut(s) 206, 802
Bpu10I CCTNAGC 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 1130
BsaBI GATNNNNATC 1 cut(s) 336
BsaJI CCNNGG 5 cut(s) 43, 82, 151, 708, 1041
BsaWI WCCGGW 1 cut(s) 180
BsaXI ACNNNNNCTCC 4 cut(s) 175, 205, 775, 805
Bsc4I CCNNNNNNNGG 4 cut(s) 257, 422, 497, 610
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 5 cut(s) 223, 316, 734, 838, 1175
Bse21I CCTNAGG 1 cut(s) 327
Bse8I GATNNNNATC 1 cut(s) 336
BseAI TCCGGA 1 cut(s) 180
BseBI CCWGG 4 cut(s) 396, 423, 777, 1146
BseDI CCNNGG 5 cut(s) 43, 82, 151, 708, 1041
BseGI GGATG 4 cut(s) 220, 337, 667, 819
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 4 cut(s) 257, 422, 497, 610
BseMII CTCAG 3 cut(s) 156, 318, 324
BseNI ACTGG 5 cut(s) 223, 316, 734, 838, 1175
BseRI GAGGAG 2 cut(s) 180, 1139
BseSI GKGCMC 1 cut(s) 708
BseXI GCAGC 2 cut(s) 160, 538
BseYI CCCAGC 1 cut(s) 145
Bsh1236I CGCG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 4 cut(s) 68, 150, 315, 1218
BshNI GGYRCC 1 cut(s) 398
BsiEI CGRYCG 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 444
BsiSI CCGG 2 cut(s) 181, 255
BslI CCNNNNNNNGG 4 cut(s) 257, 422, 497, 610
BsmAI GTCTC 2 cut(s) 214, 778
BsmBI CGTCTC 1 cut(s) 214
BsmI GAATGC 1 cut(s) 176
BsnI GGCC 4 cut(s) 68, 150, 315, 1218
BsoBI CYCGRG 1 cut(s) 444
Bsp1286I GDGCHC 1 cut(s) 708
Bsp13I TCCGGA 1 cut(s) 180
Bsp1407I TGTACA 1 cut(s) 1096
Bsp19I CCATGG 2 cut(s) 708, 1041
BspACI CCGC 9 cut(s) 151, 153, 195, 198, 258, 536, 585, 675, 1177
BspANI GGCC 4 cut(s) 68, 150, 315, 1218
BspCNI CTCAG 3 cut(s) 157, 319, 323
BspEI TCCGGA 1 cut(s) 180
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 4 cut(s) 189, 400, 1039, 1175
BspPI GGATC 9 cut(s) 119, 519, 653, 803, 845, 872, 1032, 1045, 1235
BspQI GCTCTTC 1 cut(s) 271
BspT107I GGYRCC 1 cut(s) 398
BsrFI RCCGGY 1 cut(s) 254
BsrGI TGTACA 1 cut(s) 1096
BsrI ACTGG 5 cut(s) 223, 316, 734, 838, 1175
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 5 cut(s) 43, 82, 151, 708, 1041
BssT1I CCWWGG 2 cut(s) 708, 1041
Bst2UI CCWGG 4 cut(s) 396, 423, 777, 1146
Bst4CI ACNGT 4 cut(s) 346, 435, 1101, 1156
Bst6I CTCTTC 1 cut(s) 271
BstAPI GCANNNNNTGC 1 cut(s) 582
BstAUI TGTACA 1 cut(s) 1096
BstDEI CTNAG 4 cut(s) 100, 165, 310, 327
BstDSI CCRYGG 4 cut(s) 82, 151, 708, 1041
BstEII GGTNACC 1 cut(s) 425
BstENI CCTNNNNNAGG 1 cut(s) 495
BstF5I GGATG 4 cut(s) 220, 337, 667, 819
BstFNI CGCG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 924
BstMAI GTCTC 2 cut(s) 214, 778
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 7 cut(s) 194, 203, 278, 418, 582, 629, 1017
BstNI CCWGG 4 cut(s) 396, 423, 777, 1146
BstNSI RCATGY 1 cut(s) 1253
BstPI GGTNACC 1 cut(s) 425
BstSCI CCNGG 4 cut(s) 394, 421, 775, 1144
BstSLI GKGCMC 1 cut(s) 708
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 160, 538
BstV2I GAAGAC 1 cut(s) 586
BstX2I RGATCY 3 cut(s) 511, 645, 1037
BstXI CCANNNNNNTGG 1 cut(s) 145
BstYI RGATCY 3 cut(s) 511, 645, 1037
Bsu36I CCTNAGG 1 cut(s) 327
BsuRI GGCC 4 cut(s) 68, 150, 315, 1218
BtgI CCRYGG 4 cut(s) 82, 151, 708, 1041
BtrI CACGTC 1 cut(s) 392
BtsCI GGATG 4 cut(s) 220, 337, 667, 819
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 3 cut(s) 342, 546, 1152
CfoI GCGC 1 cut(s) 924
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 148
Cfr42I CCGCGG 1 cut(s) 154
Csp6I GTAC 3 cut(s) 731, 1097, 1205
CviAII CATG 8 cut(s) 582, 709, 765, 991, 1008, 1042, 1250, 1288
CviQI GTAC 3 cut(s) 731, 1097, 1205
DdeI CTNAG 4 cut(s) 100, 165, 310, 327
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
Eco130I CCWWGG 2 cut(s) 708, 1041
Eco147I AGGCCT 1 cut(s) 1218
Eco57I CTGAAG 2 cut(s) 513, 1053
Eco81I CCTNAGG 1 cut(s) 327
Eco88I CYCGRG 1 cut(s) 444
Eco91I GGTNACC 1 cut(s) 425
EcoNI CCTNNNNNAGG 1 cut(s) 495
EcoO65I GGTNACC 1 cut(s) 425
EcoRII CCWGG 4 cut(s) 394, 421, 775, 1144
EcoT14I CCWWGG 2 cut(s) 708, 1041
ErhI CCWWGG 2 cut(s) 708, 1041
Esp3I CGTCTC 1 cut(s) 214
FaeI CATG 8 cut(s) 585, 712, 768, 994, 1011, 1045, 1253, 1291
FalI AAGNNNNNCTT 2 cut(s) 1203, 1235
FatI CATG 8 cut(s) 581, 708, 764, 990, 1007, 1041, 1249, 1287
FauI CCCGC 1 cut(s) 202
Fnu4HI GCNGC 5 cut(s) 151, 154, 174, 198, 552
FokI GGATG 4 cut(s) 227, 344, 674, 806
Fsp4HI GCNGC 5 cut(s) 151, 154, 174, 198, 552
FspBI CTAG 1 cut(s) 573
GlaI GCGC 1 cut(s) 923
GluI GCNGC 5 cut(s) 151, 154, 174, 198, 552
GsaI CCCAGC 1 cut(s) 149
GsuI CTGGAG 2 cut(s) 206, 802
HaeIII GGCC 4 cut(s) 68, 150, 315, 1218
HapII CCGG 2 cut(s) 181, 255
HhaI GCGC 1 cut(s) 924
Hin1II CATG 8 cut(s) 585, 712, 768, 994, 1011, 1045, 1253, 1291
Hin6I GCGC 1 cut(s) 922
HinP1I GCGC 1 cut(s) 922
HincII GTYRAC 1 cut(s) 844
HindII GTYRAC 1 cut(s) 844
HinfI GANTC 3 cut(s) 109, 518, 1127
HpaII CCGG 2 cut(s) 181, 255
HphI GGTGA 1 cut(s) 1280
Hpy166II GTNNAC 1 cut(s) 844
Hpy188I TCNGA 5 cut(s) 30, 44, 214, 252, 661
Hpy188III TCNNGA 7 cut(s) 181, 367, 464, 491, 515, 863, 1109
Hpy8I GTNNAC 1 cut(s) 844
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 7 cut(s) 238, 491, 1028, 1073, 1208, 1229, 1246
HpyCH4III ACNGT 4 cut(s) 346, 435, 1101, 1156
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 5 cut(s) 176, 287, 354, 389, 623
HpyF10VI GCNNNNNNNGC 7 cut(s) 194, 203, 278, 418, 582, 629, 1017
HpyF3I CTNAG 4 cut(s) 100, 165, 310, 327
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 8 cut(s) 585, 712, 768, 994, 1011, 1045, 1253, 1291
HspAI GCGC 1 cut(s) 922
Kpn2I TCCGGA 1 cut(s) 180
KspI CCGCGG 1 cut(s) 154
LguI GCTCTTC 1 cut(s) 271
LmnI GCTCC 3 cut(s) 193, 899, 1179
Lsp1109I GCAGC 2 cut(s) 160, 538
LweI GCATC 3 cut(s) 193, 205, 828
MaeI CTAG 1 cut(s) 573
MaeII ACGT 1 cut(s) 391
MaeIII GTNAC 4 cut(s) 302, 425, 692, 1150
MboII GAAGA 4 cut(s) 65, 288, 506, 586
MfeI CAATTG 1 cut(s) 726
MflI RGATCY 3 cut(s) 511, 645, 1037
MhlI GDGCHC 1 cut(s) 708
MluCI AATT 5 cut(s) 37, 726, 951, 1262, 1281
MlyI GAGTC 1 cut(s) 1136
MmeI TCCRAC 3 cut(s) 275, 773, 1138
MnlI CCTC 9 cut(s) 38, 79, 201, 317, 322, 433, 499, 918, 1117
MroI TCCGGA 1 cut(s) 180
MroXI GAANNNNTTC 1 cut(s) 1218
MseI TTAA 6 cut(s) 567, 852, 918, 996, 1209, 1280
MslI CAYNNNNRTG 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 153
MspI CCGG 2 cut(s) 181, 255
MspR9I CCNGG 4 cut(s) 396, 423, 777, 1146
MunI CAATTG 1 cut(s) 726
Mva1269I GAATGC 1 cut(s) 176
MvaI CCWGG 4 cut(s) 396, 423, 777, 1146
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 7 cut(s) 194, 203, 278, 418, 582, 629, 1017
NcoI CCATGG 2 cut(s) 708, 1041
NlaIII CATG 8 cut(s) 585, 712, 768, 994, 1011, 1045, 1253, 1291
NlaIV GGNNCC 4 cut(s) 189, 400, 1039, 1175
NmuCI GTSAC 2 cut(s) 302, 1150
NspI RCATGY 1 cut(s) 1253
PaeR7I CTCGAG 1 cut(s) 444
PceI AGGCCT 1 cut(s) 1218
PciSI GCTCTTC 1 cut(s) 271
PctI GAATGC 1 cut(s) 176
PdmI GAANNNNTTC 1 cut(s) 1218
PfeI GAWTC 2 cut(s) 109, 518
PflMI CCANNNNNTGG 1 cut(s) 610
PkrI GCNGC 5 cut(s) 152, 155, 175, 199, 553
PleI GAGTC 1 cut(s) 1135
PpsI GAGTC 1 cut(s) 1135
PshBI ATTAAT 1 cut(s) 996
Psp6I CCWGG 4 cut(s) 394, 421, 775, 1144
PspEI GGTNACC 1 cut(s) 425
PspFI CCCAGC 1 cut(s) 145
PspGI CCWGG 4 cut(s) 394, 421, 775, 1144
PspN4I GGNNCC 4 cut(s) 189, 400, 1039, 1175
PspPI GGNCC 1 cut(s) 148
PspXI VCTCGAGB 1 cut(s) 444
PsrI GAACNNNNNNTAC 2 cut(s) 1188, 1220
PsuI RGATCY 3 cut(s) 511, 645, 1037
RsaI GTAC 3 cut(s) 732, 1098, 1206
RsaNI GTAC 3 cut(s) 731, 1097, 1205
RseI CAYNNNNRTG 1 cut(s) 140
SacII CCGCGG 1 cut(s) 154
SapI GCTCTTC 1 cut(s) 271
SaqAI TTAA 6 cut(s) 567, 852, 918, 996, 1209, 1280
SatI GCNGC 5 cut(s) 151, 154, 174, 198, 552
Sau96I GGNCC 1 cut(s) 148
ScaI AGTACT 1 cut(s) 1206
SchI GAGTC 1 cut(s) 1136
ScrFI CCNGG 4 cut(s) 396, 423, 777, 1146
SduI GDGCHC 1 cut(s) 708
SfaNI GCATC 3 cut(s) 193, 205, 828
Sfr274I CTCGAG 1 cut(s) 444
Sfr303I CCGCGG 1 cut(s) 154
SgrBI CCGCGG 1 cut(s) 154
SlaI CTCGAG 1 cut(s) 444
SmiMI CAYNNNNRTG 1 cut(s) 140
SmlI CTYRAG 2 cut(s) 444, 1109
SmoI CTYRAG 2 cut(s) 444, 1109
Sse9I AATT 5 cut(s) 37, 726, 951, 1262, 1281
SseBI AGGCCT 1 cut(s) 1218
SsiI CCGC 9 cut(s) 151, 153, 195, 198, 258, 536, 585, 675, 1177
SspI AATATT 1 cut(s) 406
SspMI CTAG 1 cut(s) 573
StuI AGGCCT 1 cut(s) 1218
StyD4I CCNGG 4 cut(s) 394, 421, 775, 1144
StyI CCWWGG 2 cut(s) 708, 1041
TaaI ACNGT 4 cut(s) 346, 435, 1101, 1156
TaiI ACGT 1 cut(s) 394
TaqI TCGA 3 cut(s) 366, 445, 456
TasI AATT 5 cut(s) 37, 726, 951, 1262, 1281
TatI WGTACW 2 cut(s) 1096, 1204
TauI GCSGC 3 cut(s) 153, 156, 200
TfiI GAWTC 2 cut(s) 109, 518
Tru1I TTAA 6 cut(s) 567, 852, 918, 996, 1209, 1280
Tru9I TTAA 6 cut(s) 567, 852, 918, 996, 1209, 1280
TscAI CASTG 3 cut(s) 349, 553, 1159
TseFI GTSAC 2 cut(s) 302, 1150
TseI GCWGC 2 cut(s) 173, 551
Tsp45I GTSAC 2 cut(s) 302, 1150
TspDTI ATGAA 2 cut(s) 678, 1014
TspGWI ACGGA 2 cut(s) 67, 71
TspRI CASTG 3 cut(s) 349, 553, 1159
Van91I CCANNNNNTGG 1 cut(s) 610
VspI ATTAAT 1 cut(s) 996
XagI CCTNNNNNAGG 1 cut(s) 495
XapI RAATTY 1 cut(s) 37
XceI RCATGY 1 cut(s) 1253
XcmI CCANNNNNNNNNTGG 2 cut(s) 142, 1048
XhoI CTCGAG 1 cut(s) 444
XmnI GAANNNNTTC 1 cut(s) 1218
XspI CTAG 1 cut(s) 573
ZrmI AGTACT 1 cut(s) 1206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.