Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008956

Physical Location & Seq

Genomic Coordinates Forward (+)

4001526 .. 4008853

Gene Structure 7328 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00081020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAGGCAGGGACTCAGGACGACGACGTGGGAATTCAAATTGTATGCCTTTTCGTGCAGCAGAAAATCCTTCTGCATCGACCGGATTATATTGATACTTTGATAGTACACCAAAAGACTGGGCAACTCGACGGTCAACTCAAGTCCGGTTGGGTTCACATACCACTATGTCTGAGTCAGATTCACATACTAGACCGATTCAGGTCCACAGAGACGAATCAGGGGCAACCCAGACTATGGATGCTTCAATATGAAGCTCGAGCAGCTTTTGACCATCTTGAAGTTCGCCATTTTGATCTTATTCCTGAAAAAGGTTGGGAGGTGGATCTTGATTCAGTTGAAGCTCTTGTGGATAACAACACTGCTGCCATTGTTATCATTAACCCTAGCAATCCTTGTGGAAATGTCTTCACATACCAGCATTTGAAGAAGATTATGAGATTATTGGGAGAACGTTATGAGATTATCGGGAGAACGTCTTCGACTTACAATAAGCAGGCGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016740 GO:0016769 GO:0019439 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

168

Amino Acids

19.28

Weight (kDa)

5.75

Isoelectric Point (pI)

29.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	89 - 149	1.3e-08	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36160
fragaria_vesca	FvH4_6g26610 FvH4_6g26610 FvH4_6g26610 FvH4_6g26610
malus_domestica	MD17G1235000.v1.1
prunus_persica	Prupe.3G133000_v2.0.a1 Prupe.3G133100_v2.0.a1 Prupe.3G133100_v2.0.a1 Prupe.3G133100_v2.0.a1
pyrus_communis	pycom17g23840
rosa_chinensis	RchiOBHm_Chr2g0127461
rosa_laevigata	RLG00000018961
rosa_roxburghii	Rroxscaffold_2G00081020 Rroxscaffold_2G00116410
rosa_rugosa	Rorug02G0274800 Rorug02G0274900
rosa_samantha	Rh2AG325900 Rh2BG335500 Rh2CG313700 Rh2DG353100
rosa_wichuraiana	Rw2G026440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	237
AclI	AACGTT	1 cut(s)	454
AclWI	GGATC	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	33
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	2 cut(s)	237, 311
AgsI	TTSAA	5 cut(s)	38, 248, 281, 341, 427
AjiI	CACGTC	1 cut(s)	28
AluBI	AGCT	3 cut(s)	257, 266, 344
AluI	AGCT	3 cut(s)	257, 266, 344
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	333
Ama87I	CYCGRG	1 cut(s)	258
ApeKI	GCWGC	3 cut(s)	58, 263, 365
ApoI	RAATTY	1 cut(s)	33
Asp700I	GAANNNNTTC	1 cut(s)	478
AspS9I	GGNCC	1 cut(s)	204
AvaI	CYCGRG	1 cut(s)	258
AvaII	GGWCC	1 cut(s)	204
BbsI	GAAGAC	2 cut(s)	400, 471
BbvI	GCAGC	3 cut(s)	70, 275, 352
BccI	CCATC	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	2 cut(s)	191, 387
BisI	GCNGC	3 cut(s)	59, 264, 366
BlsI	GCNGC	3 cut(s)	60, 265, 367
Bme18I	GGWCC	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	258
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	204
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	2 cut(s)	85, 231
BmuI	ACTGGG	1 cut(s)	129
BpiI	GAAGAC	2 cut(s)	400, 471
BpuEI	CTTGAG	1 cut(s)	125
BsaWI	WCCGGW	2 cut(s)	82, 146
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 311
Bse1I	ACTGG	1 cut(s)	124
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	2 cut(s)	237, 311
BseMII	CTCAG	2 cut(s)	29, 164
BseNI	ACTGG	1 cut(s)	124
BseXI	GCAGC	3 cut(s)	70, 275, 352
BsgI	GTGCAG	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	83
BsiEI	CGRYCG	1 cut(s)	83
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	2 cut(s)	83, 147
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	2 cut(s)	237, 311
BsmAI	GTCTC	1 cut(s)	206
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	25
BsoBI	CYCGRG	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	295, 325
BspCNI	CTCAG	2 cut(s)	28, 165
BspPI	GGATC	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	295, 325
Bst4CI	ACNGT	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	2 cut(s)	15, 173
BstENI	CCTNNNNNAGG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	246
BstKTI	GATC	2 cut(s)	298, 328
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	2 cut(s)	295, 325
BstMCI	CGRYCG	1 cut(s)	83
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstV1I	GCAGC	3 cut(s)	70, 275, 352
BstV2I	GAAGAC	2 cut(s)	400, 471
BstX2I	RGATCY	1 cut(s)	325
BstXI	CCANNNNNNTGG	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	325
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	246
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	498
Cfr13I	GGNCC	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	107
CspCI	CAANNNNNGTGG	2 cut(s)	379, 414
CviJI	RGCY	3 cut(s)	257, 266, 344
CviKI_1	RGCY	3 cut(s)	257, 266, 344
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	2 cut(s)	15, 173
DpnI	GATC	2 cut(s)	297, 327
DpnII	GATC	2 cut(s)	295, 325
Eco47I	GGWCC	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	258
EcoNI	CCTNNNNNAGG	1 cut(s)	309
EcoRI	GAATTC	1 cut(s)	33
Esp3I	CGTCTC	1 cut(s)	206
FaqI	GGGAC	1 cut(s)	25
Fnu4HI	GCNGC	3 cut(s)	59, 264, 366
FokI	GGATG	1 cut(s)	253
Fsp4HI	GCNGC	3 cut(s)	59, 264, 366
FspBI	CTAG	2 cut(s)	191, 387
GluI	GCNGC	3 cut(s)	59, 264, 366
HapII	CCGG	2 cut(s)	83, 147
HincII	GTYRAC	1 cut(s)	137
HindII	GTYRAC	1 cut(s)	137
HinfI	GANTC	6 cut(s)	13, 175, 181, 198, 217, 332
HpaII	CCGG	2 cut(s)	83, 147
Hpy166II	GTNNAC	4 cut(s)	109, 137, 157, 207
Hpy188I	TCNGA	2 cut(s)	174, 180
Hpy188III	TCNNGA	5 cut(s)	17, 278, 305, 329, 469
Hpy8I	GTNNAC	4 cut(s)	109, 137, 157, 207
Hpy99I	CGWCG	3 cut(s)	26, 29, 134
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	3 cut(s)	27, 454, 476
HpyCH4V	TGCA	2 cut(s)	58, 76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	2 cut(s)	15, 173
HpySE526I	ACGT	3 cut(s)	27, 454, 476
Kzo9I	GATC	2 cut(s)	295, 325
Lsp1109I	GCAGC	3 cut(s)	70, 275, 352
LweI	GCATC	2 cut(s)	85, 231
MaeI	CTAG	2 cut(s)	191, 387
MaeII	ACGT	3 cut(s)	27, 454, 476
MalI	GATC	2 cut(s)	297, 327
MboI	GATC	2 cut(s)	295, 325
MboII	GAAGA	4 cut(s)	400, 439, 442, 471
MflI	RGATCY	1 cut(s)	325
MluCI	AATT	2 cut(s)	33, 39
MlyI	GAGTC	2 cut(s)	7, 184
MnlI	CCTC	1 cut(s)	313
MroXI	GAANNNNTTC	1 cut(s)	478
MseI	TTAA	1 cut(s)	381
MspI	CCGG	2 cut(s)	83, 147
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeII	GATC	2 cut(s)	295, 325
PaeR7I	CTCGAG	1 cut(s)	258
PdmI	GAANNNNTTC	1 cut(s)	478
PfeI	GAWTC	4 cut(s)	181, 198, 217, 332
PflMI	CCANNNNNTGG	1 cut(s)	237
PkrI	GCNGC	3 cut(s)	60, 265, 367
PleI	GAGTC	2 cut(s)	7, 183
PpsI	GAGTC	2 cut(s)	7, 183
Psp1406I	AACGTT	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	204
PspXI	VCTCGAGB	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	3 cut(s)	59, 264, 366
Sau3AI	GATC	2 cut(s)	295, 325
Sau96I	GGNCC	1 cut(s)	204
SchI	GAGTC	2 cut(s)	7, 184
SetI	ASST	9 cut(s)	30, 206, 259, 268, 316, 324, 346, 457, 479
SfaNI	GCATC	2 cut(s)	85, 231
Sfr274I	CTCGAG	1 cut(s)	258
SinI	GGWCC	1 cut(s)	204
SlaI	CTCGAG	1 cut(s)	258
SmlI	CTYRAG	2 cut(s)	140, 258
SmoI	CTYRAG	2 cut(s)	140, 258
Sse9I	AATT	2 cut(s)	33, 39
SspMI	CTAG	2 cut(s)	191, 387
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	3 cut(s)	30, 457, 479
TaqI	TCGA	4 cut(s)	79, 129, 259, 482
TaqII	GACCGA	1 cut(s)	210
TasI	AATT	2 cut(s)	33, 39
TatI	WGTACW	1 cut(s)	106
TfiI	GAWTC	4 cut(s)	181, 198, 217, 332
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	3 cut(s)	58, 263, 365
TspDTI	ATGAA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	367
Van91I	CCANNNNNTGG	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	204
XagI	CCTNNNNNAGG	1 cut(s)	309
XapI	RAATTY	1 cut(s)	33
XhoI	CTCGAG	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	478
XspI	CTAG	2 cut(s)	191, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.