Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008956

Physical Location & Seq

Genomic Coordinates Forward (+)

42263711 .. 42271358

Gene Structure 7648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49931

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAATAAGAATATTAGCCATGTTGTATTGTGCGGTGATAGAAAGAAAAAGTTGGACAAATTTAATATTCATGTACTTATCTTCGTACTCTATCACAATAGAGCTATTGCAGAGTTTCTCTCCCGTGACCTCTCAAGCCAGTTATTGCCTGAAGATGTATATCTCACTGTTGGTTGCACACAAGCAATCGAGATCATAGTGTCTGTTCTTGCACGTCCTGGTGCCAATATTCTGCTTCCCAAGCCTGGTTACCCACAGTATGAAGCTCGAGCAGCTTTTGACCATCTTGAAGTTCGCCATTTTGATCTTATTCCTGAAAAAGGTTGGGAGGTGGATCTTGATTCTGTTGAAGCTCTTGTGGATAACAACACTGCCGCCATTGTTGTCATTAACCCTAGCAATCCTTGTGGAAATGTCTTCACATACCAGCATTTGAAGAAGATTGCAGAAACAGCAAAGAAACTCGGGATCTTTGTGATTTCGGATGAAGTTTATGGCCGTTTGGCTTTTGCCAGTAACCCTTTTGTGCCTATGGGAAAGTTCAGTTCAATTGTACCAGTTCTTACACTTGGTTCTATATCAAAGACATGGATTGTTCCTGGCTGGAGACTTGGCTGGATTGTGAAAAATGATCCCGAGGGCATCCTTGAAAAGACTGGGGTCGTGGACAGCATTAAGAACTATCTTGATATCACTTGTGACCCGGCGACCTTTGTTCAGGGAGCAATACCTCAAATCATTGAGCGCACAAAAGAGAGTTTTTTCTCCAATATAATTGGCATAATGAGAGAAGCTGTGGATATATTATATGACATGATTAAGGAAATCCCATGCATTACTTGCCCACATAAACCTGAAGGTTCCATGGTTGTATTGGTTAAACTAAACCTATCGGCACTTGAAGGCATTGATGATGATATACAGTTTTGTCTTAAGCTGTCCAAAGAGGAGTCTGTGATTGTTCTGCCAGGGGTCACTGTTGGACTGAAAAATTGGCTCCGCATTACTTTTGCTGTGGAACCTCAAGTACTTAAAGAAGGCCTTGAAAGGATCAAAGCCTTCTCCCAAAGACATGCCAAGAAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016740 GO:0016769 GO:0019439 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

362

Amino Acids

40.4

Weight (kDa)

6.47

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	34 - 351	1.4e-49	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36160
fragaria_vesca	FvH4_6g26610 FvH4_6g26610 FvH4_6g26610 FvH4_6g26610
malus_domestica	MD17G1235000.v1.1
prunus_persica	Prupe.3G133000_v2.0.a1 Prupe.3G133100_v2.0.a1 Prupe.3G133100_v2.0.a1 Prupe.3G133100_v2.0.a1
pyrus_communis	pycom17g23840
rosa_chinensis	RchiOBHm_Chr2g0127461
rosa_laevigata	RLG00000018961
rosa_roxburghii	Rroxscaffold_2G00081020 Rroxscaffold_2G00116410
rosa_rugosa	Rorug02G0274800 Rorug02G0274900
rosa_samantha	Rh2AG325900 Rh2BG335500 Rh2CG313700 Rh2DG353100
rosa_wichuraiana	Rw2G026440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AciI	CCGC	3 cut(s)	33, 375, 1000
AclWI	GGATC	4 cut(s)	342, 476, 626, 1058
AcoI	YGGCCR	1 cut(s)	496
AcsI	RAATTY	1 cut(s)	59
AcuI	CTGAAG	2 cut(s)	171, 876
AfaI	GTAC	4 cut(s)	75, 87, 555, 1029
AfiI	CCNNNNNNNGG	2 cut(s)	245, 320
AflII	CTTAAG	1 cut(s)	932
AgsI	TTSAA	7 cut(s)	290, 350, 436, 549, 650, 902, 1046
AjiI	CACGTC	1 cut(s)	215
AjnI	CCWGG	4 cut(s)	217, 244, 598, 967
AluBI	AGCT	6 cut(s)	104, 266, 275, 353, 794, 937
AluI	AGCT	6 cut(s)	104, 266, 275, 353, 794, 937
Alw26I	GTCTC	1 cut(s)	601
AlwI	GGATC	4 cut(s)	342, 476, 626, 1058
Ama87I	CYCGRG	3 cut(s)	267, 464, 635
AoxI	GGCC	2 cut(s)	496, 1039
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	747
AsuC2I	CCSGG	1 cut(s)	704
AsuHPI	GGTGA	1 cut(s)	47
AvaI	CYCGRG	3 cut(s)	267, 464, 635
BanI	GGYRCC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	409
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	1 cut(s)	291
BceAI	ACGGC	1 cut(s)	483
BciT130I	CCWGG	4 cut(s)	219, 246, 600, 969
BcnI	CCSGG	1 cut(s)	704
BcoDI	GTCTC	1 cut(s)	601
BfaI	CTAG	1 cut(s)	396
BfrI	CTTAAG	1 cut(s)	932
BisI	GCNGC	2 cut(s)	273, 375
BlsI	GCNGC	2 cut(s)	274, 376
BmcAI	AGTACT	1 cut(s)	1029
Bme1390I	CCNGG	5 cut(s)	219, 246, 600, 704, 969
BmeT110I	CYCGRG	3 cut(s)	267, 464, 635
BmgBI	CACGTC	1 cut(s)	215
BmiI	GGNNCC	4 cut(s)	223, 862, 998, 1020
BmrFI	CCNGG	5 cut(s)	219, 246, 600, 704, 969
BmrI	ACTGGG	1 cut(s)	666
BmsI	GCATC	1 cut(s)	651
BmuI	ACTGGG	1 cut(s)	666
BoxI	GACNNNNGTC	1 cut(s)	659
BpiI	GAAGAC	1 cut(s)	409
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BpmI	CTGGAG	1 cut(s)	625
BpuEI	CTTGAG	2 cut(s)	118, 1008
BpuMI	CCSGG	1 cut(s)	704
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	3 cut(s)	636, 864, 968
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 320
Bse1I	ACTGG	4 cut(s)	139, 513, 557, 661
Bse8I	GATNNNNATC	1 cut(s)	159
BseBI	CCWGG	4 cut(s)	219, 246, 600, 969
BseDI	CCNNGG	3 cut(s)	636, 864, 968
BseGI	GGATG	2 cut(s)	490, 642
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	245, 320
BseNI	ACTGG	4 cut(s)	139, 513, 557, 661
BseRI	GAGGAG	1 cut(s)	962
BseXI	GCAGC	1 cut(s)	284
BshFI	GGCC	2 cut(s)	498, 1041
BshNI	GGYRCC	1 cut(s)	221
BsiHKCI	CYCGRG	3 cut(s)	267, 464, 635
BsiSI	CCGG	1 cut(s)	704
BslI	CCNNNNNNNGG	2 cut(s)	245, 320
BsmAI	GTCTC	1 cut(s)	601
BsnI	GGCC	2 cut(s)	498, 1041
BsoBI	CYCGRG	3 cut(s)	267, 464, 635
Bsp143I	GATC	6 cut(s)	192, 304, 334, 468, 631, 1050
Bsp19I	CCATGG	1 cut(s)	864
BspACI	CCGC	3 cut(s)	33, 375, 1000
BspANI	GGCC	2 cut(s)	498, 1041
BspLI	GGNNCC	4 cut(s)	223, 862, 998, 1020
BspPI	GGATC	4 cut(s)	342, 476, 626, 1058
BspT107I	GGYRCC	1 cut(s)	221
BspTI	CTTAAG	1 cut(s)	932
BsrI	ACTGG	4 cut(s)	139, 513, 557, 661
BssECI	CCNNGG	3 cut(s)	636, 864, 968
BssMI	GATC	6 cut(s)	192, 304, 334, 468, 631, 1050
BssT1I	CCWWGG	1 cut(s)	864
Bst2UI	CCWGG	4 cut(s)	219, 246, 600, 969
Bst4CI	ACNGT	4 cut(s)	169, 258, 924, 979
BstAFI	CTTAAG	1 cut(s)	932
BstAPI	GCANNNNNTGC	1 cut(s)	840
BstDSI	CCRYGG	1 cut(s)	864
BstEII	GGTNACC	1 cut(s)	248
BstENI	CCTNNNNNAGG	1 cut(s)	318
BstF5I	GGATG	2 cut(s)	490, 642
BstHHI	GCGC	1 cut(s)	747
BstKTI	GATC	6 cut(s)	195, 307, 337, 471, 634, 1053
BstMAI	GTCTC	1 cut(s)	601
BstMBI	GATC	6 cut(s)	192, 304, 334, 468, 631, 1050
BstMWI	GCNNNNNNNGC	4 cut(s)	241, 272, 452, 840
BstNI	CCWGG	4 cut(s)	219, 246, 600, 969
BstNSI	RCATGY	1 cut(s)	1076
BstPAI	GACNNNNGTC	1 cut(s)	659
BstPI	GGTNACC	1 cut(s)	248
BstSCI	CCNGG	5 cut(s)	217, 244, 598, 702, 967
BstV1I	GCAGC	1 cut(s)	284
BstV2I	GAAGAC	1 cut(s)	409
BstX2I	RGATCY	2 cut(s)	334, 468
BstYI	RGATCY	2 cut(s)	334, 468
BsuRI	GGCC	2 cut(s)	498, 1041
BtgI	CCRYGG	1 cut(s)	864
BtrI	CACGTC	1 cut(s)	215
BtsCI	GGATG	2 cut(s)	490, 642
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	3 cut(s)	165, 369, 975
CfoI	GCGC	1 cut(s)	747
Csp6I	GTAC	4 cut(s)	74, 86, 554, 1028
CspCI	CAANNNNNGTGG	2 cut(s)	388, 423
CviAII	CATG	7 cut(s)	20, 71, 588, 814, 831, 865, 1073
CviQI	GTAC	4 cut(s)	74, 86, 554, 1028
DpnI	GATC	6 cut(s)	194, 306, 336, 470, 633, 1052
DpnII	GATC	6 cut(s)	192, 304, 334, 468, 631, 1050
EaeI	YGGCCR	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	864
Eco147I	AGGCCT	1 cut(s)	1041
Eco32I	GATATC	1 cut(s)	691
Eco57I	CTGAAG	2 cut(s)	171, 876
Eco88I	CYCGRG	3 cut(s)	267, 464, 635
Eco91I	GGTNACC	1 cut(s)	248
EcoNI	CCTNNNNNAGG	1 cut(s)	318
EcoO65I	GGTNACC	1 cut(s)	248
EcoRII	CCWGG	4 cut(s)	217, 244, 598, 967
EcoRV	GATATC	1 cut(s)	691
EcoT14I	CCWWGG	1 cut(s)	864
EcoT22I	ATGCAT	1 cut(s)	836
ErhI	CCWWGG	1 cut(s)	864
FaeI	CATG	7 cut(s)	23, 74, 591, 817, 834, 868, 1076
FalI	AAGNNNNNCTT	2 cut(s)	1026, 1058
FatI	CATG	7 cut(s)	19, 70, 587, 813, 830, 864, 1072
Fnu4HI	GCNGC	2 cut(s)	273, 375
FokI	GGATG	2 cut(s)	497, 629
Fsp4HI	GCNGC	2 cut(s)	273, 375
FspBI	CTAG	1 cut(s)	396
GlaI	GCGC	1 cut(s)	746
GluI	GCNGC	2 cut(s)	273, 375
GsuI	CTGGAG	1 cut(s)	625
HaeIII	GGCC	2 cut(s)	498, 1041
HapII	CCGG	1 cut(s)	704
HhaI	GCGC	1 cut(s)	747
Hin1II	CATG	7 cut(s)	23, 74, 591, 817, 834, 868, 1076
Hin6I	GCGC	1 cut(s)	745
HinP1I	GCGC	1 cut(s)	745
HinfI	GANTC	2 cut(s)	341, 950
HpaII	CCGG	1 cut(s)	704
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	667
Hpy188I	TCNGA	1 cut(s)	484
Hpy188III	TCNNGA	7 cut(s)	190, 287, 314, 338, 466, 635, 686
Hpy8I	GTNNAC	1 cut(s)	667
HpyAV	CCTTC	4 cut(s)	851, 896, 1031, 1069
HpyCH4III	ACNGT	4 cut(s)	169, 258, 924, 979
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	5 cut(s)	110, 177, 212, 446, 834
HpyF10VI	GCNNNNNNNGC	4 cut(s)	241, 272, 452, 840
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	7 cut(s)	23, 74, 591, 817, 834, 868, 1076
HspAI	GCGC	1 cut(s)	745
Kzo9I	GATC	6 cut(s)	192, 304, 334, 468, 631, 1050
LmnI	GCTCC	2 cut(s)	722, 1002
Lsp1109I	GCAGC	1 cut(s)	284
LweI	GCATC	1 cut(s)	651
MaeI	CTAG	1 cut(s)	396
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	5 cut(s)	125, 248, 515, 698, 973
MalI	GATC	6 cut(s)	194, 306, 336, 470, 633, 1052
MboI	GATC	6 cut(s)	192, 304, 334, 468, 631, 1050
MboII	GAAGA	5 cut(s)	73, 164, 409, 448, 451
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	2 cut(s)	334, 468
MluCI	AATT	4 cut(s)	59, 549, 774, 991
MlyI	GAGTC	1 cut(s)	959
MmeI	TCCRAC	2 cut(s)	33, 961
MnlI	CCTC	6 cut(s)	140, 322, 631, 741, 940, 1032
Mph1103I	ATGCAT	1 cut(s)	836
MseI	TTAA	7 cut(s)	63, 390, 675, 819, 879, 933, 1032
MspCI	CTTAAG	1 cut(s)	932
MspI	CCGG	1 cut(s)	704
MspR9I	CCNGG	5 cut(s)	219, 246, 600, 704, 969
MunI	CAATTG	1 cut(s)	549
MvaI	CCWGG	4 cut(s)	219, 246, 600, 969
MwoI	GCNNNNNNNGC	4 cut(s)	241, 272, 452, 840
NciI	CCSGG	1 cut(s)	704
NcoI	CCATGG	1 cut(s)	864
NdeII	GATC	6 cut(s)	192, 304, 334, 468, 631, 1050
NlaIII	CATG	7 cut(s)	23, 74, 591, 817, 834, 868, 1076
NlaIV	GGNNCC	4 cut(s)	223, 862, 998, 1020
NmuCI	GTSAC	3 cut(s)	125, 698, 973
NsiI	ATGCAT	1 cut(s)	836
NspI	RCATGY	1 cut(s)	1076
PaeR7I	CTCGAG	1 cut(s)	267
PceI	AGGCCT	1 cut(s)	1041
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	274, 376
PleI	GAGTC	1 cut(s)	958
PpsI	GAGTC	1 cut(s)	958
PshAI	GACNNNNGTC	1 cut(s)	659
Psp6I	CCWGG	4 cut(s)	217, 244, 598, 967
PspEI	GGTNACC	1 cut(s)	248
PspGI	CCWGG	4 cut(s)	217, 244, 598, 967
PspN4I	GGNNCC	4 cut(s)	223, 862, 998, 1020
PspXI	VCTCGAGB	1 cut(s)	267
PsrI	GAACNNNNNNTAC	2 cut(s)	1011, 1043
PsuI	RGATCY	2 cut(s)	334, 468
RsaI	GTAC	4 cut(s)	75, 87, 555, 1029
RsaNI	GTAC	4 cut(s)	74, 86, 554, 1028
SaqAI	TTAA	7 cut(s)	63, 390, 675, 819, 879, 933, 1032
SatI	GCNGC	2 cut(s)	273, 375
Sau3AI	GATC	6 cut(s)	192, 304, 334, 468, 631, 1050
ScaI	AGTACT	1 cut(s)	1029
SchI	GAGTC	1 cut(s)	959
ScrFI	CCNGG	5 cut(s)	219, 246, 600, 704, 969
SfaNI	GCATC	1 cut(s)	651
Sfr274I	CTCGAG	1 cut(s)	267
SlaI	CTCGAG	1 cut(s)	267
SmlI	CTYRAG	4 cut(s)	133, 267, 932, 1023
SmoI	CTYRAG	4 cut(s)	133, 267, 932, 1023
Sse9I	AATT	4 cut(s)	59, 549, 774, 991
SseBI	AGGCCT	1 cut(s)	1041
SsiI	CCGC	3 cut(s)	33, 375, 1000
SspI	AATATT	3 cut(s)	13, 67, 229
SspMI	CTAG	1 cut(s)	396
StuI	AGGCCT	1 cut(s)	1041
StyD4I	CCNGG	5 cut(s)	217, 244, 598, 702, 967
StyI	CCWWGG	1 cut(s)	864
TaaI	ACNGT	4 cut(s)	169, 258, 924, 979
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	2 cut(s)	189, 268
TasI	AATT	4 cut(s)	59, 549, 774, 991
TatI	WGTACW	2 cut(s)	73, 1027
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	7 cut(s)	63, 390, 675, 819, 879, 933, 1032
Tru9I	TTAA	7 cut(s)	63, 390, 675, 819, 879, 933, 1032
TscAI	CASTG	3 cut(s)	172, 376, 982
TseFI	GTSAC	3 cut(s)	125, 698, 973
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	3 cut(s)	125, 698, 973
TspDTI	ATGAA	4 cut(s)	17, 59, 276, 501
TspRI	CASTG	3 cut(s)	172, 376, 982
Vha464I	CTTAAG	1 cut(s)	932
XagI	CCTNNNNNAGG	1 cut(s)	318
XapI	RAATTY	1 cut(s)	59
XceI	RCATGY	1 cut(s)	1076
XcmI	CCANNNNNNNNNTGG	1 cut(s)	871
XhoI	CTCGAG	1 cut(s)	267
XspI	CTAG	1 cut(s)	396
ZrmI	AGTACT	1 cut(s)	1029
Zsp2I	ATGCAT	1 cut(s)	836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.