Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008956

Physical Location & Seq

Genomic Coordinates Reverse (-)

22101420 .. 22103198

Gene Structure 1779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g23840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGTTATCATCAATCCTAGCAATCCCTGTGGAAATGTCTTCACTTCTCAGCATTTGAAAAAGATTGCAGAAACAGCAAACAAACTTGGCATCTTCGTAATTTCGGATGAAGTTTATGGGCATCTAGCTTTCGGCAGCAACCCTTTTGTACCTATGGGAAAGTTTAGTTCCATCGTGCCAGTTATTACGCTTGGCTCTATATCAAAGACATGGATTGTTCCTGGTTGGAAACTTGGCTGGATTGTCAAAAATGATCCCAATGGCATCTTTGAAAAAACTGGGATTGTGGACACACTTAACAACTATCTCGACATCACTACTGACCCAGCAACATTCATTCAGGGAGCTATACCTCAAATGTTTGAGAGAACAAAAGATGTATTTTTCTCAAACATAATTGGCCTTTTGAGAGAAGCCGCAGATCTTTTATATGAAATGGTGAAGGAAATTCCATGCCTTACTTGCCCAAACAAACCACAAGGATCTATGGTTGTATTGGTAAAGCTAAATCTATCAGCACTTGAAGACATTGATGATGATATACAGTTTTGTCTTAAGTTGGCCGAAGAGGAGTCGGTGATTGTTCTTCCAGGTAAAAATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016740 GO:0016769 GO:0019439 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

202

Amino Acids

22.13

Weight (kDa)

4.92

Isoelectric Point (pI)

21.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36160
fragaria_vesca	FvH4_6g26610 FvH4_6g26610 FvH4_6g26610 FvH4_6g26610
malus_domestica	MD17G1235000.v1.1
prunus_persica	Prupe.3G133000_v2.0.a1 Prupe.3G133100_v2.0.a1 Prupe.3G133100_v2.0.a1 Prupe.3G133100_v2.0.a1
pyrus_communis	pycom17g23840
rosa_chinensis	RchiOBHm_Chr2g0127461
rosa_laevigata	RLG00000018961
rosa_roxburghii	Rroxscaffold_2G00081020 Rroxscaffold_2G00116410
rosa_rugosa	Rorug02G0274800 Rorug02G0274900
rosa_samantha	Rh2AG325900 Rh2BG335500 Rh2CG313700 Rh2DG353100
rosa_wichuraiana	Rw2G026440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	417
AclWI	GGATC	2 cut(s)	248, 490
AcoI	YGGCCR	1 cut(s)	561
AcsI	RAATTY	1 cut(s)	447
AfaI	GTAC	1 cut(s)	150
AflII	CTTAAG	1 cut(s)	554
AgsI	TTSAA	3 cut(s)	58, 272, 524
AjnI	CCWGG	2 cut(s)	220, 589
AluBI	AGCT	3 cut(s)	128, 347, 505
AluI	AGCT	3 cut(s)	128, 347, 505
AlwI	GGATC	2 cut(s)	248, 490
AoxI	GGCC	2 cut(s)	400, 561
ApeKI	GCWGC	1 cut(s)	135
ApoI	RAATTY	1 cut(s)	447
AsuHPI	GGTGA	2 cut(s)	451, 589
BbsI	GAAGAC	2 cut(s)	31, 531
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	2 cut(s)	222, 591
BfaI	CTAG	2 cut(s)	18, 125
BfrI	CTTAAG	1 cut(s)	554
BglII	AGATCT	1 cut(s)	421
BisI	GCNGC	2 cut(s)	136, 417
BlsI	GCNGC	2 cut(s)	137, 418
Bme1390I	CCNGG	2 cut(s)	222, 591
BmrFI	CCNGG	2 cut(s)	222, 591
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	3 cut(s)	99, 130, 273
BmuI	ACTGGG	1 cut(s)	288
BpiI	GAAGAC	2 cut(s)	31, 531
Bse1I	ACTGG	2 cut(s)	179, 283
BseBI	CCWGG	2 cut(s)	222, 591
BseGI	GGATG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	62
BseNI	ACTGG	2 cut(s)	179, 283
BseRI	GAGGAG	1 cut(s)	584
BseXI	GCAGC	1 cut(s)	147
BseYI	CCCAGC	1 cut(s)	325
BshFI	GGCC	2 cut(s)	402, 563
BsnI	GGCC	2 cut(s)	402, 563
Bsp143I	GATC	3 cut(s)	253, 421, 482
BspACI	CCGC	1 cut(s)	417
BspANI	GGCC	2 cut(s)	402, 563
BspCNI	CTCAG	1 cut(s)	61
BspPI	GGATC	2 cut(s)	248, 490
BspTI	CTTAAG	1 cut(s)	554
BsrI	ACTGG	2 cut(s)	179, 283
BssMI	GATC	3 cut(s)	253, 421, 482
Bst2UI	CCWGG	2 cut(s)	222, 591
Bst4CI	ACNGT	1 cut(s)	546
Bst6I	CTCTTC	1 cut(s)	561
BstAFI	CTTAAG	1 cut(s)	554
BstDEI	CTNAG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	3 cut(s)	256, 424, 485
BstMBI	GATC	3 cut(s)	253, 421, 482
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 462
BstNI	CCWGG	2 cut(s)	222, 591
BstSCI	CCNGG	2 cut(s)	220, 589
BstV1I	GCAGC	1 cut(s)	147
BstV2I	GAAGAC	2 cut(s)	31, 531
BstX2I	RGATCY	2 cut(s)	421, 482
BstYI	RGATCY	2 cut(s)	421, 482
BsuRI	GGCC	2 cut(s)	402, 563
BtsCI	GGATG	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	149
CspCI	CAANNNNNGTGG	2 cut(s)	10, 45
CviAII	CATG	2 cut(s)	210, 453
CviJI	RGCY	8 cut(s)	128, 195, 237, 347, 402, 416, 505, 563
CviKI_1	RGCY	8 cut(s)	128, 195, 237, 347, 402, 416, 505, 563
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	3 cut(s)	255, 423, 484
DpnII	GATC	3 cut(s)	253, 421, 482
EaeI	YGGCCR	1 cut(s)	561
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
EcoRII	CCWGG	2 cut(s)	220, 589
FaeI	CATG	2 cut(s)	213, 456
FatI	CATG	2 cut(s)	209, 452
Fnu4HI	GCNGC	2 cut(s)	136, 417
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	2 cut(s)	136, 417
FspBI	CTAG	2 cut(s)	18, 125
GluI	GCNGC	2 cut(s)	136, 417
GsaI	CCCAGC	1 cut(s)	329
HaeIII	GGCC	2 cut(s)	402, 563
Hin1II	CATG	2 cut(s)	213, 456
HinfI	GANTC	1 cut(s)	572
HphI	GGTGA	2 cut(s)	451, 589
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	1 cut(s)	436
HpyCH4III	ACNGT	1 cut(s)	546
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 462
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	213, 456
Kzo9I	GATC	3 cut(s)	253, 421, 482
LmnI	GCTCC	1 cut(s)	344
LpnPI	CCDG	9 cut(s)	40, 192, 207, 223, 234, 264, 326, 339, 576
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	3 cut(s)	99, 130, 273
MaeI	CTAG	2 cut(s)	18, 125
MalI	GATC	3 cut(s)	255, 423, 484
MboI	GATC	3 cut(s)	253, 421, 482
MboII	GAAGA	5 cut(s)	31, 85, 536, 578, 578
MflI	RGATCY	2 cut(s)	421, 482
MluCI	AATT	4 cut(s)	99, 396, 447, 601
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	2 cut(s)	363, 562
MseI	TTAA	2 cut(s)	297, 555
MspCI	CTTAAG	1 cut(s)	554
MspR9I	CCNGG	2 cut(s)	222, 591
MvaI	CCWGG	2 cut(s)	222, 591
MwoI	GCNNNNNNNGC	2 cut(s)	74, 462
NdeII	GATC	3 cut(s)	253, 421, 482
NlaIII	CATG	2 cut(s)	213, 456
PkrI	GCNGC	2 cut(s)	137, 418
PleI	GAGTC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	580
Psp6I	CCWGG	2 cut(s)	220, 589
PspFI	CCCAGC	1 cut(s)	325
PspGI	CCWGG	2 cut(s)	220, 589
PsuI	RGATCY	2 cut(s)	421, 482
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	297, 555
SatI	GCNGC	2 cut(s)	136, 417
Sau3AI	GATC	3 cut(s)	253, 421, 482
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	2 cut(s)	222, 591
SetI	ASST	6 cut(s)	130, 154, 349, 355, 507, 595
SfaNI	GCATC	3 cut(s)	99, 130, 273
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	4 cut(s)	99, 396, 447, 601
SsiI	CCGC	1 cut(s)	417
SspMI	CTAG	2 cut(s)	18, 125
StyD4I	CCNGG	2 cut(s)	220, 589
TaaI	ACNGT	1 cut(s)	546
TaqI	TCGA	1 cut(s)	309
TasI	AATT	4 cut(s)	99, 396, 447, 601
TauI	GCSGC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	297, 555
Tru9I	TTAA	2 cut(s)	297, 555
TseI	GCWGC	1 cut(s)	135
TspDTI	ATGAA	3 cut(s)	123, 325, 447
Vha464I	CTTAAG	1 cut(s)	554
XapI	RAATTY	1 cut(s)	447
XspI	CTAG	2 cut(s)	18, 125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.