Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008956

Physical Location & Seq

Genomic Coordinates Forward (+)

29422323 .. 29422568

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0274800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGCCGGAGGAGGTAGCTCTCACCTATGACGGCGCCACCAGGTCTCTCCGCAGCAACAAGGCCAAGACCAACTTCCTGACACCGTTGACCAGAGGATATCTCTCCCTCGACCTTAACATCTCCTCAGCCCAGTCGGCCTCCCACTCCAGCTATCTAGTTGAGTTTCTTCACACCGGCGTCCTAAACGACGTCATGAAGAGAAAGGAGGCGGCGGGGACGTCGTTTGTTGTGTCCGGTGTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016740 GO:0016769 GO:0019439 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

81

Amino Acids

8.75

Weight (kDa)

8.11

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36160
fragaria_vesca	FvH4_6g26610 FvH4_6g26610 FvH4_6g26610 FvH4_6g26610
malus_domestica	MD17G1235000.v1.1
prunus_persica	Prupe.3G133000_v2.0.a1 Prupe.3G133100_v2.0.a1 Prupe.3G133100_v2.0.a1 Prupe.3G133100_v2.0.a1
pyrus_communis	pycom17g23840
rosa_chinensis	RchiOBHm_Chr2g0127461
rosa_laevigata	RLG00000018961
rosa_roxburghii	Rroxscaffold_2G00081020 Rroxscaffold_2G00116410
rosa_rugosa	Rorug02G0274800 Rorug02G0274900
rosa_samantha	Rh2AG325900 Rh2BG335500 Rh2CG313700 Rh2DG353100
rosa_wichuraiana	Rw2G026440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	192, 221
AccB1I	GGYRCC	1 cut(s)	32
AciI	CCGC	3 cut(s)	49, 209, 212
AcyI	GRCGYC	4 cut(s)	33, 177, 189, 218
AjnI	CCWGG	1 cut(s)	38
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	2 cut(s)	17, 150
AluI	AGCT	2 cut(s)	17, 150
Alw26I	GTCTC	1 cut(s)	48
AoxI	GGCC	2 cut(s)	60, 135
ApeKI	GCWGC	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	32
BbvCI	CCTCAGC	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	63
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	36
BglI	GCCNNNNNGGC	1 cut(s)	134
BisI	GCNGC	2 cut(s)	52, 210
BlsI	GCNGC	2 cut(s)	53, 211
Bme1390I	CCNGG	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	40
BmrI	ACTGGG	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	124
BplI	GAGNNNNNCTC	2 cut(s)	84, 116
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	124
BsaHI	GRCGYC	4 cut(s)	33, 177, 189, 218
BsaI	GGTCTC	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	233
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	2 cut(s)	23, 112
BseXI	GCAGC	1 cut(s)	63
BshFI	GGCC	2 cut(s)	62, 137
BshNI	GGYRCC	1 cut(s)	32
BsiSI	CCGG	3 cut(s)	5, 174, 234
BslFI	GGGAC	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	2 cut(s)	62, 137
Bso31I	GGTCTC	1 cut(s)	48
BspACI	CCGC	3 cut(s)	49, 209, 212
BspANI	GGCC	2 cut(s)	62, 137
BspCNI	CTCAG	1 cut(s)	137
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	32
BspTNI	GGTCTC	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	173
BssNI	GRCGYC	4 cut(s)	33, 177, 189, 218
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	191
BstACI	GRCGYC	4 cut(s)	33, 177, 189, 218
BstDEI	CTNAG	1 cut(s)	124
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstMAI	GTCTC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	62, 137
CciI	TCATGA	1 cut(s)	192
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	1 cut(s)	173
CseI	GACGC	1 cut(s)	166
CsiI	ACCWGGT	1 cut(s)	38
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	5 cut(s)	17, 62, 128, 137, 150
CviKI_1	RGCY	5 cut(s)	17, 62, 128, 137, 150
DdeI	CTNAG	1 cut(s)	124
DinI	GGCGCC	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	48
Eco32I	GATATC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	38
EcoRV	GATATC	1 cut(s)	98
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
FaeI	CATG	1 cut(s)	196
FaiI	YATR	2 cut(s)	27, 194
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	1 cut(s)	192
FauI	CCCGC	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	52, 210
Fsp4HI	GCNGC	2 cut(s)	52, 210
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	2 cut(s)	52, 210
GsuI	CTGGAG	1 cut(s)	130
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	62, 137
HapII	CCGG	3 cut(s)	5, 174, 234
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	4 cut(s)	33, 177, 189, 218
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HpaII	CCGG	3 cut(s)	5, 174, 234
HphI	GGTGA	1 cut(s)	13
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	2 cut(s)	76, 193
Hpy8I	GTNNAC	1 cut(s)	87
Hpy99I	CGWCG	2 cut(s)	191, 223
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4IV	ACGT	2 cut(s)	189, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	124
HpySE526I	ACGT	2 cut(s)	189, 218
Hsp92I	GRCGYC	4 cut(s)	33, 177, 189, 218
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	1 cut(s)	33
KasI	GGCGCC	1 cut(s)	32
LpnPI	CCDG	8 cut(s)	18, 25, 52, 89, 103, 143, 160, 187
Lsp1109I	GCAGC	1 cut(s)	63
MabI	ACCWGGT	1 cut(s)	38
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	2 cut(s)	189, 218
MboII	GAAGA	2 cut(s)	158, 208
Mly113I	GGCGCC	1 cut(s)	33
MnlI	CCTC	6 cut(s)	4, 86, 116, 133, 148, 199
MseI	TTAA	1 cut(s)	114
MspI	CCGG	3 cut(s)	5, 174, 234
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	134
NarI	GGCGCC	1 cut(s)	33
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	1 cut(s)	34
PagI	TCATGA	1 cut(s)	192
PkrI	GCNGC	2 cut(s)	53, 211
PluTI	GGCGCC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	2 cut(s)	52, 210
ScrFI	CCNGG	1 cut(s)	40
SetI	ASST	8 cut(s)	15, 19, 26, 44, 114, 152, 192, 221
SexAI	ACCWGGT	1 cut(s)	38
SfoI	GGCGCC	1 cut(s)	34
SgrAI	CRCCGGYG	1 cut(s)	173
SsiI	CCGC	3 cut(s)	49, 209, 212
SspDI	GGCGCC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	84
TaiI	ACGT	2 cut(s)	192, 221
TaqI	TCGA	1 cut(s)	108
TauI	GCSGC	1 cut(s)	212
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseI	GCWGC	1 cut(s)	51
TspDTI	ATGAA	1 cut(s)	209
XspI	CTAG	1 cut(s)	155
ZraI	GACGTC	2 cut(s)	190, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.