MD17G1235000.v1.1

Aminotransferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
28380025 .. 28389789
9765 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1235000.v1.1.491

Sequence Viewer

Length: 1281 bp
ATGGAGATGGAGGGTGTGGAGAATGGTTGGCAGAAGAAATGGCAGTTCCGAGGGAACGAAGAACTGAACACGGCGTCGATCTCCGTCCGAGGAGCTCTCACGATGTTAATGAAAAATCTCAGGAACCCAGCTGGTGATGATCAACGGCCCACCATTATGCTTGGCCGCGGGGACCCCACTGAATTCCGATCGTTTTGGACCACTCCGGCGGCTGTTGACGCCGTCGCAGATGCCCTCCATTCCTTCCAGTTCAACTCTTACTGTCCTACCGGCGGTGTTATTCCGGCAAGAAGGGCTATTGCAGAATATCTCTCTCGTGACCAACCAAACAAGTTATCGGCGAATGATGTATATCTCACTGCTGGTTGTACCCAAGCCATTGAAATCATAGTATCTGTTCTTGCACGTCCTGGTGCCAACATTCTTCTTCCAAGGCCTGGTTACCCTCAGTACGAAGCTCGCGCAGCGTTTGACCACCTCGAAGTACGCCATTTCGATCTTCTTCCTGAAAAGGGCTGGGAGGTGGATCTTGATTCTGTTGAATCTCTTGCAGATCACAACACTGCCGCTATGGTTATCATCAATCCTAGCAATCCCTGTGGAAATGTCTTCACTTCTCAGCATTTGAAAAAGATTGCAGAAACAGCAAACAAACTTGGTATCTTCGTAATTTCGGATGAAGTTTACGGGCATCTAGCTTTCGGCAGCAACCCTTTTGTACCTATGGGAAAGTTTAGTTCCATCGTACCAGTTATTACGCTTGGCTCTGTATCAAAGACATGGATTGTTCCTGGTTGGAAACTTGGCTGGATTGTCAAAAATGATCCCAATGGCATCTTTGAAAAAACTGGGATTGTGGAGACACTTAACAACTATCTCGACATCACTACTGACCCAGCAACATTCATTCAGGGAGCTATACCTCAAATGTTTGAGAGAACAAAAGATGTGTTTTTCTCTAACATAATTGGCCTTTTGAGAGAAGCCGCAGATCTTTTATACGAAATGGTGAAGGAAATTCCATGCCTTACTTGCCCAAACAAACCACAAGGATCTATGGTTGTATTGGTAAAGCTAAATCTATCATCACTTGAAGACATTGATGATGATATACAGTTTTGTCTTAAGTTGGCCAAAGAGGAGTCGGTGATTGTTCTTCCAGGGGTCACGGTTGGACTGAAAGATTGGGTCCGCATTACTTTTGCTGTGGAGCTTTCAGTACTTGAAGATGGATTTAAGAGGATAAAAGCCTTCCACCAAAGGCATGCCAAGAAGCTCTAA

Protein Analysis

427

Amino Acids

47.25

Weight (kDa)

5.6

Isoelectric Point (pI)

28.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 52 - 409 3e-53 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 413
AccB7I CCANNNNNTGG 1 cut(s) 437
AccII CGCG 2 cut(s) 168, 462
AciI CCGC 7 cut(s) 166, 168, 209, 273, 567, 987, 1192
AclWI GGATC 3 cut(s) 534, 818, 1060
AcoI YGGCCR 2 cut(s) 163, 1131
AcsI RAATTY 2 cut(s) 182, 1017
AcyI GRCGYC 2 cut(s) 74, 219
AfaI GTAC 6 cut(s) 370, 452, 486, 720, 747, 1221
AfiI CCNNNNNNNGG 3 cut(s) 272, 437, 512
AflII CTTAAG 1 cut(s) 1124
AgsI TTSAA 7 cut(s) 253, 383, 542, 628, 842, 1094, 1226
AjiI CACGTC 1 cut(s) 407
AjnI CCWGG 4 cut(s) 409, 436, 790, 1159
AluBI AGCT 8 cut(s) 95, 131, 458, 698, 917, 1075, 1213, 1276
AluI AGCT 8 cut(s) 95, 131, 458, 698, 917, 1075, 1213, 1276
Alw21I GWGCWC 1 cut(s) 97
Alw26I GTCTC 1 cut(s) 854
AlwI GGATC 3 cut(s) 534, 818, 1060
AoxI GGCC 5 cut(s) 146, 163, 434, 970, 1131
ApeKI GCWGC 2 cut(s) 464, 705
ApoI RAATTY 2 cut(s) 182, 1017
AspLEI GCGC 1 cut(s) 464
AspS9I GGNCC 4 cut(s) 147, 172, 198, 1189
AsuHPI GGTGA 3 cut(s) 146, 1021, 1159
AvaII GGWCC 3 cut(s) 172, 198, 1189
BalI TGGCCA 1 cut(s) 1133
BanI GGYRCC 1 cut(s) 413
BanII GRGCYC 1 cut(s) 97
BauI CACGAG 1 cut(s) 315
BbsI GAAGAC 2 cut(s) 601, 1101
Bbv12I GWGCWC 1 cut(s) 97
BbvI GCAGC 2 cut(s) 476, 717
BccI CCATC 2 cut(s) 749, 1223
BceAI ACGGC 3 cut(s) 87, 161, 206
BciT130I CCWGG 4 cut(s) 411, 438, 792, 1161
BclI TGATCA 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 854
BfaI CTAG 2 cut(s) 588, 695
BfrI CTTAAG 1 cut(s) 1124
BglII AGATCT 1 cut(s) 991
BisI GCNGC 6 cut(s) 166, 210, 465, 567, 706, 987
BlsI GCNGC 6 cut(s) 167, 211, 466, 568, 707, 988
BmcAI AGTACT 1 cut(s) 1221
Bme1390I CCNGG 4 cut(s) 411, 438, 792, 1161
Bme18I GGWCC 3 cut(s) 172, 198, 1189
BmgBI CACGTC 1 cut(s) 407
BmgT120I GGNCC 4 cut(s) 147, 172, 198, 1189
BmiI GGNNCC 5 cut(s) 125, 173, 174, 415, 1190
BmrFI CCNGG 4 cut(s) 411, 438, 792, 1161
BmrI ACTGGG 1 cut(s) 858
BmsI GCATC 3 cut(s) 220, 700, 843
BmuI ACTGGG 1 cut(s) 858
BpiI GAAGAC 2 cut(s) 601, 1101
BplI GAGNNNNNCTC 2 cut(s) 81, 113
BsaBI GATNNNNATC 1 cut(s) 351
BsaHI GRCGYC 2 cut(s) 74, 219
BsaJI CCNNGG 5 cut(s) 49, 88, 166, 431, 1160
Bsc4I CCNNNNNNNGG 3 cut(s) 272, 437, 512
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 3 cut(s) 247, 749, 853
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 4 cut(s) 411, 438, 792, 1161
BseDI CCNNGG 5 cut(s) 49, 88, 166, 431, 1160
BseGI GGATG 1 cut(s) 682
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 3 cut(s) 272, 437, 512
BseMII CTCAG 3 cut(s) 133, 461, 632
BseNI ACTGG 3 cut(s) 247, 749, 853
BseRI GAGGAG 2 cut(s) 105, 1154
BseXI GCAGC 2 cut(s) 476, 717
BseYI CCCAGC 3 cut(s) 127, 516, 895
Bsh1236I CGCG 2 cut(s) 168, 462
Bsh1285I CGRYCG 1 cut(s) 191
BshFI GGCC 5 cut(s) 148, 165, 436, 972, 1133
BshNI GGYRCC 1 cut(s) 413
BsiEI CGRYCG 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 97
BsiSI CCGG 3 cut(s) 206, 270, 284
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 3 cut(s) 272, 437, 512
BsmAI GTCTC 1 cut(s) 854
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 5 cut(s) 148, 165, 436, 972, 1133
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 9 cut(s) 78, 139, 188, 496, 526, 553, 823, 991, 1052
BspACI CCGC 7 cut(s) 166, 168, 209, 273, 567, 987, 1192
BspANI GGCC 5 cut(s) 148, 165, 436, 972, 1133
BspCNI CTCAG 3 cut(s) 132, 460, 631
BspFNI CGCG 2 cut(s) 168, 462
BspLI GGNNCC 5 cut(s) 125, 173, 174, 415, 1190
BspPI GGATC 3 cut(s) 534, 818, 1060
BspT107I GGYRCC 1 cut(s) 413
BspTI CTTAAG 1 cut(s) 1124
BsrFI RCCGGY 1 cut(s) 269
BsrI ACTGG 3 cut(s) 247, 749, 853
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 5 cut(s) 49, 88, 166, 431, 1160
BssMI GATC 9 cut(s) 78, 139, 188, 496, 526, 553, 823, 991, 1052
BssNI GRCGYC 2 cut(s) 74, 219
BssSI CACGAG 1 cut(s) 315
BssT1I CCWWGG 1 cut(s) 431
Bst2BI CACGAG 1 cut(s) 315
Bst2UI CCWGG 4 cut(s) 411, 438, 792, 1161
Bst4CI ACNGT 3 cut(s) 263, 1116, 1171
BstACI GRCGYC 2 cut(s) 74, 219
BstAFI CTTAAG 1 cut(s) 1124
BstC8I GCNNGC 2 cut(s) 460, 1266
BstDEI CTNAG 3 cut(s) 119, 447, 618
BstDSI CCRYGG 1 cut(s) 166
BstEII GGTNACC 1 cut(s) 440
BstF5I GGATG 1 cut(s) 682
BstFNI CGCG 2 cut(s) 168, 462
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 9 cut(s) 81, 142, 191, 499, 529, 556, 826, 994, 1055
BstMAI GTCTC 1 cut(s) 854
BstMBI GATC 9 cut(s) 78, 139, 188, 496, 526, 553, 823, 991, 1052
BstMCI CGRYCG 1 cut(s) 191
BstMWI GCNNNNNNNGC 5 cut(s) 218, 293, 464, 644, 1032
BstNI CCWGG 4 cut(s) 411, 438, 792, 1161
BstNSI RCATGY 1 cut(s) 1268
BstPI GGTNACC 1 cut(s) 440
BstSCI CCNGG 4 cut(s) 409, 436, 790, 1159
BstUI CGCG 2 cut(s) 168, 462
BstV1I GCAGC 2 cut(s) 476, 717
BstV2I GAAGAC 2 cut(s) 601, 1101
BstX2I RGATCY 3 cut(s) 526, 991, 1052
BstYI RGATCY 3 cut(s) 526, 991, 1052
BsuRI GGCC 5 cut(s) 148, 165, 436, 972, 1133
BtgI CCRYGG 1 cut(s) 166
BtrI CACGTC 1 cut(s) 407
BtsCI GGATG 1 cut(s) 682
BtsI GCAGTG 2 cut(s) 357, 561
BtsIMutI CAGTG 3 cut(s) 177, 357, 561
Cac8I GCNNGC 2 cut(s) 460, 1266
CfoI GCGC 1 cut(s) 464
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 4 cut(s) 147, 172, 198, 1189
Cfr42I CCGCGG 1 cut(s) 169
CseI GACGC 2 cut(s) 63, 227
Csp6I GTAC 6 cut(s) 369, 451, 485, 719, 746, 1220
CspCI CAANNNNNGTGG 2 cut(s) 580, 615
CviAII CATG 3 cut(s) 780, 1023, 1265
CviQI GTAC 6 cut(s) 369, 451, 485, 719, 746, 1220
DdeI CTNAG 3 cut(s) 119, 447, 618
DpnI GATC 9 cut(s) 80, 141, 190, 498, 528, 555, 825, 993, 1054
DpnII GATC 9 cut(s) 78, 139, 188, 496, 526, 553, 823, 991, 1052
EaeI YGGCCR 2 cut(s) 163, 1131
Ecl136II GAGCTC 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 431
Eco147I AGGCCT 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 97
Eco47I GGWCC 3 cut(s) 172, 198, 1189
Eco53kI GAGCTC 1 cut(s) 95
Eco91I GGTNACC 1 cut(s) 440
EcoICRI GAGCTC 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 172
EcoO65I GGTNACC 1 cut(s) 440
EcoRI GAATTC 1 cut(s) 182
EcoRII CCWGG 4 cut(s) 409, 436, 790, 1159
EcoT14I CCWWGG 1 cut(s) 431
EcoT38I GRGCYC 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 431
FaeI CATG 3 cut(s) 783, 1026, 1268
FaqI GGGAC 1 cut(s) 185
FatI CATG 3 cut(s) 779, 1022, 1264
FauI CCCGC 1 cut(s) 161
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 6 cut(s) 166, 210, 465, 567, 706, 987
FokI GGATG 1 cut(s) 689
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 6 cut(s) 166, 210, 465, 567, 706, 987
FspBI CTAG 2 cut(s) 588, 695
GlaI GCGC 1 cut(s) 463
GluI GCNGC 6 cut(s) 166, 210, 465, 567, 706, 987
GsaI CCCAGC 3 cut(s) 131, 520, 899
HaeIII GGCC 5 cut(s) 148, 165, 436, 972, 1133
HapII CCGG 3 cut(s) 206, 270, 284
HgaI GACGC 2 cut(s) 63, 227
HhaI GCGC 1 cut(s) 464
Hin1I GRCGYC 2 cut(s) 74, 219
Hin1II CATG 3 cut(s) 783, 1026, 1268
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 3 cut(s) 533, 542, 1142
HpaII CCGG 3 cut(s) 206, 270, 284
HphI GGTGA 3 cut(s) 146, 1021, 1159
Hpy166II GTNNAC 2 cut(s) 217, 685
Hpy188I TCNGA 4 cut(s) 50, 89, 188, 676
Hpy188III TCNNGA 6 cut(s) 100, 121, 317, 506, 530, 878
Hpy8I GTNNAC 2 cut(s) 217, 685
Hpy99I CGWCG 2 cut(s) 79, 227
HpyAV CCTTC 4 cut(s) 253, 285, 1006, 1261
HpyCH4III ACNGT 3 cut(s) 263, 1116, 1171
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 4 cut(s) 302, 404, 551, 638
HpyF10VI GCNNNNNNNGC 5 cut(s) 218, 293, 464, 644, 1032
HpyF3I CTNAG 3 cut(s) 119, 447, 618
HpySE526I ACGT 1 cut(s) 406
Hsp92I GRCGYC 2 cut(s) 74, 219
Hsp92II CATG 3 cut(s) 783, 1026, 1268
HspAI GCGC 1 cut(s) 462
KflI GGGWCCC 1 cut(s) 172
Ksp22I TGATCA 1 cut(s) 139
KspI CCGCGG 1 cut(s) 169
Kzo9I GATC 9 cut(s) 78, 139, 188, 496, 526, 553, 823, 991, 1052
LmnI GCTCC 3 cut(s) 92, 914, 1210
Lsp1109I GCAGC 2 cut(s) 476, 717
LweI GCATC 3 cut(s) 220, 700, 843
MaeI CTAG 2 cut(s) 588, 695
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 3 cut(s) 317, 440, 1165
MalI GATC 9 cut(s) 80, 141, 190, 498, 528, 555, 825, 993, 1054
MboI GATC 9 cut(s) 78, 139, 188, 496, 526, 553, 823, 991, 1052
MflI RGATCY 3 cut(s) 526, 991, 1052
MhlI GDGCHC 1 cut(s) 97
MlsI TGGCCA 1 cut(s) 1133
MluCI AATT 4 cut(s) 182, 669, 966, 1017
MluNI TGGCCA 1 cut(s) 1133
MlyI GAGTC 1 cut(s) 1151
MmeI TCCRAC 2 cut(s) 776, 1153
Mox20I TGGCCA 1 cut(s) 1133
MscI TGGCCA 1 cut(s) 1133
MseI TTAA 4 cut(s) 107, 867, 1125, 1236
MslI CAYNNNNRTG 1 cut(s) 155
Msp20I TGGCCA 1 cut(s) 1133
MspA1I CMGCKG 2 cut(s) 131, 168
MspCI CTTAAG 1 cut(s) 1124
MspI CCGG 3 cut(s) 206, 270, 284
MspR9I CCNGG 4 cut(s) 411, 438, 792, 1161
MvaI CCWGG 4 cut(s) 411, 438, 792, 1161
MvnI CGCG 2 cut(s) 168, 462
MwoI GCNNNNNNNGC 5 cut(s) 218, 293, 464, 644, 1032
NdeII GATC 9 cut(s) 78, 139, 188, 496, 526, 553, 823, 991, 1052
NlaIII CATG 3 cut(s) 783, 1026, 1268
NlaIV GGNNCC 5 cut(s) 125, 173, 174, 415, 1190
NmuCI GTSAC 2 cut(s) 317, 1165
NspI RCATGY 1 cut(s) 1268
PaeI GCATGC 1 cut(s) 1268
PceI AGGCCT 1 cut(s) 436
PfeI GAWTC 2 cut(s) 533, 542
PflFI GACNNNGTC 1 cut(s) 221
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 6 cut(s) 167, 211, 466, 568, 707, 988
Ple19I CGATCG 1 cut(s) 191
PleI GAGTC 1 cut(s) 1150
PpsI GAGTC 1 cut(s) 1150
PpuMI RGGWCCY 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 97
Psp5II RGGWCCY 1 cut(s) 172
Psp6I CCWGG 4 cut(s) 409, 436, 790, 1159
PspEI GGTNACC 1 cut(s) 440
PspFI CCCAGC 3 cut(s) 127, 516, 895
PspGI CCWGG 4 cut(s) 409, 436, 790, 1159
PspN4I GGNNCC 5 cut(s) 125, 173, 174, 415, 1190
PspPI GGNCC 4 cut(s) 147, 172, 198, 1189
PspPPI RGGWCCY 1 cut(s) 172
PsuI RGATCY 3 cut(s) 526, 991, 1052
PsyI GACNNNGTC 1 cut(s) 221
PvuI CGATCG 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 131
RsaI GTAC 6 cut(s) 370, 452, 486, 720, 747, 1221
RsaNI GTAC 6 cut(s) 369, 451, 485, 719, 746, 1220
RseI CAYNNNNRTG 1 cut(s) 155
SacI GAGCTC 1 cut(s) 97
SacII CCGCGG 1 cut(s) 169
SaqAI TTAA 4 cut(s) 107, 867, 1125, 1236
SatI GCNGC 6 cut(s) 166, 210, 465, 567, 706, 987
Sau3AI GATC 9 cut(s) 78, 139, 188, 496, 526, 553, 823, 991, 1052
Sau96I GGNCC 4 cut(s) 147, 172, 198, 1189
ScaI AGTACT 1 cut(s) 1221
SchI GAGTC 1 cut(s) 1151
ScrFI CCNGG 4 cut(s) 411, 438, 792, 1161
SduI GDGCHC 1 cut(s) 97
SfaNI GCATC 3 cut(s) 220, 700, 843
Sfr303I CCGCGG 1 cut(s) 169
SgrBI CCGCGG 1 cut(s) 169
SinI GGWCC 3 cut(s) 172, 198, 1189
SmiMI CAYNNNNRTG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 1124
SmoI CTYRAG 1 cut(s) 1124
SphI GCATGC 1 cut(s) 1268
Sse9I AATT 4 cut(s) 182, 669, 966, 1017
SseBI AGGCCT 1 cut(s) 436
SsiI CCGC 7 cut(s) 166, 168, 209, 273, 567, 987, 1192
SspMI CTAG 2 cut(s) 588, 695
SstI GAGCTC 1 cut(s) 97
StuI AGGCCT 1 cut(s) 436
StyD4I CCNGG 4 cut(s) 409, 436, 790, 1159
StyI CCWWGG 1 cut(s) 431
TaaI ACNGT 3 cut(s) 263, 1116, 1171
TaiI ACGT 1 cut(s) 409
TaqI TCGA 4 cut(s) 77, 480, 495, 879
TasI AATT 4 cut(s) 182, 669, 966, 1017
TatI WGTACW 1 cut(s) 1219
TauI GCSGC 4 cut(s) 168, 212, 569, 989
TfiI GAWTC 2 cut(s) 533, 542
Tru1I TTAA 4 cut(s) 107, 867, 1125, 1236
Tru9I TTAA 4 cut(s) 107, 867, 1125, 1236
TscAI CASTG 3 cut(s) 184, 364, 568
TseFI GTSAC 2 cut(s) 317, 1165
TseI GCWGC 2 cut(s) 464, 705
Tsp45I GTSAC 2 cut(s) 317, 1165
TspDTI ATGAA 3 cut(s) 125, 693, 895
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 3 cut(s) 184, 364, 568
Tth111I GACNNNGTC 1 cut(s) 221
Van91I CCANNNNNTGG 1 cut(s) 437
Vha464I CTTAAG 1 cut(s) 1124
VpaK11BI GGWCC 3 cut(s) 172, 198, 1189
XapI RAATTY 2 cut(s) 182, 1017
XceI RCATGY 1 cut(s) 1268
XspI CTAG 2 cut(s) 588, 695
ZrmI AGTACT 1 cut(s) 1221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.