Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008956

Physical Location & Seq

Genomic Coordinates Reverse (-)

49446376 .. 49459770

Gene Structure 13395 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG353100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGAATAAGAATATTAGCCATGTTGTATTGTGCGGTGATAGAAAGAAAAAGTTGGACAAATTTAATATTCATGTACTTATCTTCGTACTCTATCACAATAGAGCTATTGCAGAGTTTCTCTCCCGTGACCTCTCAAGCCAGTTATTGCCTGAAGATGTATATCTCACTGTTGGTTGCACACAAGCAATCGAGATCATAGTGTCTGTTCTTGCACGTCCTGGTGCCAATATTCTGCTTCCCAAGCCTGGTTACCCACAGTATGAAGCTCGAGCAGCTTTTGACCATCTTGAAGTTCGCCATTTTGATCTTATTCCTGAAAAAGGTTGGGAGGTGGATCTTGATTCTGTTGAAGCTCTTGTGGATAACAACACTGCCGCCATTGTTGTCATTAACCCTAGCAATCCTTGTGGAAATGTCTTCACATACCAGCATTTGAAGAAGATTGCAGAAACAGCAAAGAAACTCGGGATCTTTGTGATTTCGGATGAAGTTTATGGCCGTTTGGCTTTTGGCAGTAACCCTTTTGTGCCTATGGGAAAGTTCAGTTCAATTGTACCAGTTCTTACACTTGGTTCTATATCAAAGGCATGGATTGTTCCTGGCTGGAGACTTGGCTGGATTGTGAAAAATGATCCCGAGGGCATCCTTGAAAAGACTGGGGTCGTGGACAGCATTAAGAACTATCTTGATATCACTTGTGACCCGGCGACCTTTGTTCAGGGAGCAATACCTCAAATCATTGAGCGCACAAAAGAGAGTTTTTTCTCCAATATAATTGGCATAATGAGAGAAGCTGTGGATATATTATATGACATGATTAAGGAAATCCCATGCATTACTTGCCCACATAAACCTGAAGGTTCCATGGTTGTATTGGTTAAACTAAACCTATCGGCACTTGAAGGCATTGATGATGATATACAGTTTTGTCTTAAGCTGTCCAAAGAGGAGTCTGTGATTGTTCTGCCAGACATCTTTGCTGGAGTTGATGACATTGGCCATGACTGCAGCATACGAGGTAATGCGGATGCTATCTTCAGTCAGCATGCTTTGATCATCACGCTATTCGTATGCAATGAGGTTCCTCAAGAGAGACTCTACATTCTTCCAATGGAAAATGGTGAAATATCCATCACCTCATTTTTGAAGCTTTCGTACGTGGAGCGAGTTCTCTTTCTTTTGGCATGTAAATTTAACGCCAACTTCCATAAGCTCCGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016740 GO:0016769 GO:0019439 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

407

Amino Acids

45.41

Weight (kDa)

5.53

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	34 - 323	6.9e-43	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36160
fragaria_vesca	FvH4_6g26610 FvH4_6g26610 FvH4_6g26610 FvH4_6g26610
malus_domestica	MD17G1235000.v1.1
prunus_persica	Prupe.3G133000_v2.0.a1 Prupe.3G133100_v2.0.a1 Prupe.3G133100_v2.0.a1 Prupe.3G133100_v2.0.a1
pyrus_communis	pycom17g23840
rosa_chinensis	RchiOBHm_Chr2g0127461
rosa_laevigata	RLG00000018961
rosa_roxburghii	Rroxscaffold_2G00081020 Rroxscaffold_2G00116410
rosa_rugosa	Rorug02G0274800 Rorug02G0274900
rosa_samantha	Rh2AG325900 Rh2BG335500 Rh2CG313700 Rh2DG353100
rosa_wichuraiana	Rw2G026440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AciI	CCGC	3 cut(s)	33, 375, 1025
AclWI	GGATC	3 cut(s)	342, 476, 626
AcoI	YGGCCR	2 cut(s)	496, 997
AcsI	RAATTY	2 cut(s)	59, 1190
AcuI	CTGAAG	3 cut(s)	171, 876, 1021
AfaI	GTAC	4 cut(s)	75, 87, 555, 1157
AfiI	CCNNNNNNNGG	2 cut(s)	245, 320
AflII	CTTAAG	1 cut(s)	932
AgsI	TTSAA	7 cut(s)	290, 350, 436, 549, 650, 902, 1147
AjiI	CACGTC	1 cut(s)	215
AjnI	CCWGG	3 cut(s)	217, 244, 598
AluBI	AGCT	8 cut(s)	104, 266, 275, 353, 794, 937, 1150, 1213
AluI	AGCT	8 cut(s)	104, 266, 275, 353, 794, 937, 1150, 1213
Alw26I	GTCTC	2 cut(s)	601, 1087
AlwI	GGATC	3 cut(s)	342, 476, 626
Ama87I	CYCGRG	3 cut(s)	267, 464, 635
AoxI	GGCC	2 cut(s)	496, 997
ApeKI	GCWGC	2 cut(s)	272, 1008
ApoI	RAATTY	2 cut(s)	59, 1190
AspLEI	GCGC	1 cut(s)	747
AsuC2I	CCSGG	1 cut(s)	704
AsuHPI	GGTGA	3 cut(s)	47, 1126, 1133
AvaI	CYCGRG	3 cut(s)	267, 464, 635
BalI	TGGCCA	1 cut(s)	999
BanI	GGYRCC	1 cut(s)	221
BarI	GAAGNNNNNNTAC	2 cut(s)	1139, 1171
BbsI	GAAGAC	1 cut(s)	409
BbvI	GCAGC	2 cut(s)	284, 1020
BccI	CCATC	2 cut(s)	291, 1139
BceAI	ACGGC	1 cut(s)	483
BciT130I	CCWGG	3 cut(s)	219, 246, 600
BclI	TGATCA	1 cut(s)	1053
BcnI	CCSGG	1 cut(s)	704
BcoDI	GTCTC	2 cut(s)	601, 1087
BfaI	CTAG	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	1006
BfrI	CTTAAG	1 cut(s)	932
BisI	GCNGC	3 cut(s)	273, 375, 1009
BlsI	GCNGC	3 cut(s)	274, 376, 1010
Bme1390I	CCNGG	4 cut(s)	219, 246, 600, 704
BmeT110I	CYCGRG	3 cut(s)	267, 464, 635
BmgBI	CACGTC	1 cut(s)	215
BmiI	GGNNCC	3 cut(s)	223, 862, 1083
BmrFI	CCNGG	4 cut(s)	219, 246, 600, 704
BmrI	ACTGGG	1 cut(s)	666
BmsI	GCATC	2 cut(s)	651, 1018
BmuI	ACTGGG	1 cut(s)	666
BoxI	GACNNNNGTC	1 cut(s)	659
BpiI	GAAGAC	1 cut(s)	409
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BpmI	CTGGAG	2 cut(s)	625, 1002
BpuEI	CTTGAG	2 cut(s)	118, 1071
BpuMI	CCSGG	1 cut(s)	704
BsaAI	YACGTR	1 cut(s)	1159
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	636, 864
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 320
Bse1I	ACTGG	3 cut(s)	139, 557, 661
Bse3DI	GCAATG	1 cut(s)	1081
Bse8I	GATNNNNATC	1 cut(s)	159
BseBI	CCWGG	3 cut(s)	219, 246, 600
BseDI	CCNNGG	2 cut(s)	636, 864
BseGI	GGATG	3 cut(s)	490, 642, 1033
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	245, 320
BseMI	GCAATG	1 cut(s)	1081
BseNI	ACTGG	3 cut(s)	139, 557, 661
BseRI	GAGGAG	1 cut(s)	962
BseXI	GCAGC	2 cut(s)	284, 1020
BshFI	GGCC	2 cut(s)	498, 999
BshNI	GGYRCC	1 cut(s)	221
BsiHKCI	CYCGRG	3 cut(s)	267, 464, 635
BsiSI	CCGG	1 cut(s)	704
BsiWI	CGTACG	1 cut(s)	1155
BslI	CCNNNNNNNGG	2 cut(s)	245, 320
BsmAI	GTCTC	2 cut(s)	601, 1087
BsnI	GGCC	2 cut(s)	498, 999
BsoBI	CYCGRG	3 cut(s)	267, 464, 635
Bsp143I	GATC	6 cut(s)	192, 304, 334, 468, 631, 1053
Bsp19I	CCATGG	1 cut(s)	864
BspACI	CCGC	3 cut(s)	33, 375, 1025
BspANI	GGCC	2 cut(s)	498, 999
BspLI	GGNNCC	3 cut(s)	223, 862, 1083
BspMAI	CTGCAG	1 cut(s)	1010
BspPI	GGATC	3 cut(s)	342, 476, 626
BspT107I	GGYRCC	1 cut(s)	221
BspTI	CTTAAG	1 cut(s)	932
BsrDI	GCAATG	1 cut(s)	1081
BsrI	ACTGG	3 cut(s)	139, 557, 661
BssECI	CCNNGG	2 cut(s)	636, 864
BssMI	GATC	6 cut(s)	192, 304, 334, 468, 631, 1053
BssT1I	CCWWGG	1 cut(s)	864
Bst2UI	CCWGG	3 cut(s)	219, 246, 600
Bst4CI	ACNGT	3 cut(s)	169, 258, 924
BstAFI	CTTAAG	1 cut(s)	932
BstAPI	GCANNNNNTGC	1 cut(s)	840
BstBAI	YACGTR	1 cut(s)	1159
BstC8I	GCNNGC	1 cut(s)	1047
BstDSI	CCRYGG	1 cut(s)	864
BstEII	GGTNACC	1 cut(s)	248
BstENI	CCTNNNNNAGG	1 cut(s)	318
BstF5I	GGATG	3 cut(s)	490, 642, 1033
BstHHI	GCGC	1 cut(s)	747
BstKTI	GATC	6 cut(s)	195, 307, 337, 471, 634, 1056
BstMAI	GTCTC	2 cut(s)	601, 1087
BstMBI	GATC	6 cut(s)	192, 304, 334, 468, 631, 1053
BstMWI	GCNNNNNNNGC	5 cut(s)	241, 272, 452, 840, 1005
BstNI	CCWGG	3 cut(s)	219, 246, 600
BstNSI	RCATGY	2 cut(s)	1049, 1188
BstPAI	GACNNNNGTC	1 cut(s)	659
BstPI	GGTNACC	1 cut(s)	248
BstSCI	CCNGG	4 cut(s)	217, 244, 598, 702
BstSFI	CTRYAG	1 cut(s)	1006
BstV1I	GCAGC	2 cut(s)	284, 1020
BstV2I	GAAGAC	1 cut(s)	409
BstX2I	RGATCY	2 cut(s)	334, 468
BstYI	RGATCY	2 cut(s)	334, 468
BsuRI	GGCC	2 cut(s)	498, 999
BtgI	CCRYGG	1 cut(s)	864
BtrI	CACGTC	1 cut(s)	215
BtsCI	GGATG	3 cut(s)	490, 642, 1033
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	2 cut(s)	165, 369
Cac8I	GCNNGC	1 cut(s)	1047
CfoI	GCGC	1 cut(s)	747
Csp6I	GTAC	4 cut(s)	74, 86, 554, 1156
CspCI	CAANNNNNGTGG	2 cut(s)	388, 423
CviAII	CATG	9 cut(s)	20, 71, 588, 814, 831, 865, 1001, 1046, 1185
CviQI	GTAC	4 cut(s)	74, 86, 554, 1156
DpnI	GATC	6 cut(s)	194, 306, 336, 470, 633, 1055
DpnII	GATC	6 cut(s)	192, 304, 334, 468, 631, 1053
EaeI	YGGCCR	2 cut(s)	496, 997
Eco130I	CCWWGG	1 cut(s)	864
Eco32I	GATATC	1 cut(s)	691
Eco57I	CTGAAG	3 cut(s)	171, 876, 1021
Eco88I	CYCGRG	3 cut(s)	267, 464, 635
Eco91I	GGTNACC	1 cut(s)	248
EcoNI	CCTNNNNNAGG	1 cut(s)	318
EcoO65I	GGTNACC	1 cut(s)	248
EcoRII	CCWGG	3 cut(s)	217, 244, 598
EcoRV	GATATC	1 cut(s)	691
EcoT14I	CCWWGG	1 cut(s)	864
EcoT22I	ATGCAT	1 cut(s)	836
ErhI	CCWWGG	1 cut(s)	864
FaeI	CATG	9 cut(s)	23, 74, 591, 817, 834, 868, 1004, 1049, 1188
FatI	CATG	9 cut(s)	19, 70, 587, 813, 830, 864, 1000, 1045, 1184
FbaI	TGATCA	1 cut(s)	1053
Fnu4HI	GCNGC	3 cut(s)	273, 375, 1009
FokI	GGATG	3 cut(s)	497, 629, 1040
Fsp4HI	GCNGC	3 cut(s)	273, 375, 1009
FspBI	CTAG	1 cut(s)	396
GlaI	GCGC	1 cut(s)	746
GluI	GCNGC	3 cut(s)	273, 375, 1009
GsuI	CTGGAG	2 cut(s)	625, 1002
HaeIII	GGCC	2 cut(s)	498, 999
HapII	CCGG	1 cut(s)	704
HhaI	GCGC	1 cut(s)	747
Hin1II	CATG	9 cut(s)	23, 74, 591, 817, 834, 868, 1004, 1049, 1188
Hin6I	GCGC	1 cut(s)	745
HinP1I	GCGC	1 cut(s)	745
HindIII	AAGCTT	1 cut(s)	1148
HinfI	GANTC	3 cut(s)	341, 950, 1095
HpaII	CCGG	1 cut(s)	704
HphI	GGTGA	3 cut(s)	47, 1126, 1133
Hpy166II	GTNNAC	1 cut(s)	667
Hpy188I	TCNGA	2 cut(s)	484, 1223
Hpy188III	TCNNGA	8 cut(s)	190, 287, 314, 338, 466, 635, 686, 1088
Hpy8I	GTNNAC	1 cut(s)	667
HpyAV	CCTTC	2 cut(s)	851, 896
HpyCH4III	ACNGT	3 cut(s)	169, 258, 924
HpyCH4IV	ACGT	2 cut(s)	214, 1158
HpyCH4V	TGCA	7 cut(s)	110, 177, 212, 446, 834, 1008, 1074
HpyF10VI	GCNNNNNNNGC	5 cut(s)	241, 272, 452, 840, 1005
HpySE526I	ACGT	2 cut(s)	214, 1158
Hsp92II	CATG	9 cut(s)	23, 74, 591, 817, 834, 868, 1004, 1049, 1188
HspAI	GCGC	1 cut(s)	745
Ksp22I	TGATCA	1 cut(s)	1053
Kzo9I	GATC	6 cut(s)	192, 304, 334, 468, 631, 1053
LmnI	GCTCC	3 cut(s)	722, 1162, 1218
Lsp1109I	GCAGC	2 cut(s)	284, 1020
LweI	GCATC	2 cut(s)	651, 1018
MaeI	CTAG	1 cut(s)	396
MaeII	ACGT	2 cut(s)	214, 1158
MaeIII	GTNAC	4 cut(s)	125, 248, 515, 698
MalI	GATC	6 cut(s)	194, 306, 336, 470, 633, 1055
MboI	GATC	6 cut(s)	192, 304, 334, 468, 631, 1053
MboII	GAAGA	7 cut(s)	73, 164, 409, 448, 451, 1027, 1097
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	2 cut(s)	334, 468
MlsI	TGGCCA	1 cut(s)	999
MluCI	AATT	4 cut(s)	59, 549, 774, 1190
MluNI	TGGCCA	1 cut(s)	999
MlyI	GAGTC	2 cut(s)	959, 1089
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	9 cut(s)	140, 322, 631, 741, 940, 1010, 1072, 1095, 1147
Mox20I	TGGCCA	1 cut(s)	999
Mph1103I	ATGCAT	1 cut(s)	836
MscI	TGGCCA	1 cut(s)	999
MseI	TTAA	7 cut(s)	63, 390, 675, 819, 879, 933, 1194
Msp20I	TGGCCA	1 cut(s)	999
MspCI	CTTAAG	1 cut(s)	932
MspI	CCGG	1 cut(s)	704
MspR9I	CCNGG	4 cut(s)	219, 246, 600, 704
MunI	CAATTG	1 cut(s)	549
MvaI	CCWGG	3 cut(s)	219, 246, 600
MwoI	GCNNNNNNNGC	5 cut(s)	241, 272, 452, 840, 1005
NciI	CCSGG	1 cut(s)	704
NcoI	CCATGG	1 cut(s)	864
NdeII	GATC	6 cut(s)	192, 304, 334, 468, 631, 1053
NlaIII	CATG	9 cut(s)	23, 74, 591, 817, 834, 868, 1004, 1049, 1188
NlaIV	GGNNCC	3 cut(s)	223, 862, 1083
NmuCI	GTSAC	2 cut(s)	125, 698
NsiI	ATGCAT	1 cut(s)	836
NspI	RCATGY	2 cut(s)	1049, 1188
PaeI	GCATGC	1 cut(s)	1049
PaeR7I	CTCGAG	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	341
Pfl23II	CGTACG	1 cut(s)	1155
PkrI	GCNGC	3 cut(s)	274, 376, 1010
PleI	GAGTC	2 cut(s)	958, 1089
PpsI	GAGTC	2 cut(s)	958, 1089
Ppu21I	YACGTR	1 cut(s)	1159
PshAI	GACNNNNGTC	1 cut(s)	659
Psp6I	CCWGG	3 cut(s)	217, 244, 598
PspEI	GGTNACC	1 cut(s)	248
PspGI	CCWGG	3 cut(s)	217, 244, 598
PspLI	CGTACG	1 cut(s)	1155
PspN4I	GGNNCC	3 cut(s)	223, 862, 1083
PspXI	VCTCGAGB	1 cut(s)	267
PstI	CTGCAG	1 cut(s)	1010
PsuI	RGATCY	2 cut(s)	334, 468
RsaI	GTAC	4 cut(s)	75, 87, 555, 1157
RsaNI	GTAC	4 cut(s)	74, 86, 554, 1156
SaqAI	TTAA	7 cut(s)	63, 390, 675, 819, 879, 933, 1194
SatI	GCNGC	3 cut(s)	273, 375, 1009
Sau3AI	GATC	6 cut(s)	192, 304, 334, 468, 631, 1053
SchI	GAGTC	2 cut(s)	959, 1089
ScrFI	CCNGG	4 cut(s)	219, 246, 600, 704
SfaNI	GCATC	2 cut(s)	651, 1018
SfcI	CTRYAG	1 cut(s)	1006
Sfr274I	CTCGAG	1 cut(s)	267
SlaI	CTCGAG	1 cut(s)	267
SmlI	CTYRAG	4 cut(s)	133, 267, 932, 1086
SmoI	CTYRAG	4 cut(s)	133, 267, 932, 1086
SphI	GCATGC	1 cut(s)	1049
Sse9I	AATT	4 cut(s)	59, 549, 774, 1190
SsiI	CCGC	3 cut(s)	33, 375, 1025
SspI	AATATT	3 cut(s)	13, 67, 229
SspMI	CTAG	1 cut(s)	396
StyD4I	CCNGG	4 cut(s)	217, 244, 598, 702
StyI	CCWWGG	1 cut(s)	864
TaaI	ACNGT	3 cut(s)	169, 258, 924
TaiI	ACGT	2 cut(s)	217, 1161
TaqI	TCGA	2 cut(s)	189, 268
TasI	AATT	4 cut(s)	59, 549, 774, 1190
TatI	WGTACW	1 cut(s)	73
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	7 cut(s)	63, 390, 675, 819, 879, 933, 1194
Tru9I	TTAA	7 cut(s)	63, 390, 675, 819, 879, 933, 1194
TscAI	CASTG	2 cut(s)	172, 376
TseFI	GTSAC	2 cut(s)	125, 698
TseI	GCWGC	2 cut(s)	272, 1008
Tsp45I	GTSAC	2 cut(s)	125, 698
TspDTI	ATGAA	4 cut(s)	17, 59, 276, 501
TspGWI	ACGGA	1 cut(s)	1205
TspRI	CASTG	2 cut(s)	172, 376
Vha464I	CTTAAG	1 cut(s)	932
XagI	CCTNNNNNAGG	1 cut(s)	318
XapI	RAATTY	2 cut(s)	59, 1190
XceI	RCATGY	2 cut(s)	1049, 1188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	871
XhoI	CTCGAG	1 cut(s)	267
XspI	CTAG	1 cut(s)	396
Zsp2I	ATGCAT	1 cut(s)	836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.