Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013045

Physical Location & Seq

Genomic Coordinates Reverse (-)

21174257 .. 21178232

Gene Structure 3976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2055 bp

ATGCCACCCCTCACACCCAACTCCCTCGCCGCCCTTCTCCAATCCGCCATCGCCACCCGCTCCTCTCTCACCGGGCGAGCCGCCCACGCCCACATCATCAGAACCCTCCAACCCCCTCACCCCAGCTTCCTCTCCAACCACCTCATCAACATGTACTCCAAACTCGACCTCCCCAACTCCGCCCAGCTCCTCCTCCACCTGACCCCCTCCCGCTCCGTCGTCACCTGGACCGCCCTCATCGCTGGTCTTGTCCAAAACCGTCATTTCGCCTCCGCTCTCCTCAACTTCATCAACATGCGCCGCGACTCTGTCGTCCCCAATGACTTCACCTTCCCCTGCGCCTTCAAGGCCTCCGGGCTGCTTCGCCGGCCGGTGATCGGAAAACAGGTCCACGCCCTTGCCGTCAAGGCCGGGCAGATATGTGACGTGTTTGTTGGGTGCAGTGCTTTTGACATGTACTGCAAGACTGGTCTGGGCGATGATGCAGGGAAGGTGTTTGATGAAATGCCTGAGAGGAACCTTGCGACTTGGAATGCCTACATGTCGAATGCGGTGCTTGACCGGCGCCCGGTGAGCGCTGTGGAGAAGTTTGTTGAGTTTGTGAGGGCGGGTGGGGAGCCGAATTCCATTACCTTCTGTGCGTTTCTGAATGCGTGTTCGGATTTGTCGGCATTAGAACTTGGGAGGCAGTTGCATGGGTTTGTGATGCGGTTTGGGTTTGGGAGAGATGTGTCAGTGATGAATGGGCTTGTGGATTTTTATGGCAAGTGTCGGGATGTTGGGTTGGCTAGGATGGTTTTTGAGAGAATTGGTCAGGCTAATCATGTGTCTTGGTGCTCCATGGTGGCTGCTTATGTGCAGAATAATGAGGAGGAGAAGGCTTGCGAGTTGTTTTTGCGGGCAAGGAGGGAGGGTGTTGAGCCGACTGATTTCATGGTTTCGAGTGTTCTGAGTGCTTGTTCCGGACTTGCGTGGCTTGAACAGGGTAGGTCAATTCATGCGCTTGCGGTGAAGGCTTGTGTGGATGGAAATGTCTTTGTTGGGAGTGCGTTGGTTGACATGTATGGAAAATGTGGGAGTATAGAAGATGCCGAGTGTGCATTTGACATGATGCCTTCAAGGAATTTGATCAGTTGGAATGCGATGGTAGGTGGGTATACACATCAAGGACATGCCAACACGGCTTTGGCCTTGTTCGAGGAGATGAGTGACAGGAGCCATGAACTTAAACCTAATTATGTCACATTGGTGTGTGTATTATCGGCATGTAGTAGAGCGGGTGATGTGCAAAAAGGCATGCAGATCTTTGATTCAATGAAATCACGGTATGGCGTTGAACCAGGGGCAGAGCATTATGCATGTGTTGTGGACTTGCTAGGGCGAGCTGGGATGGTAGAACGCGCTTATGAGTTTATTACAAAGATGCCAATTCGTCCAACAATTTCCATTTGGGGGGCTCTTCTCGGGGCTTGTAAAATGTATAAGAAGCCAGAATTAGGGAAAATTGCGGCTGACAAGTTATTTGAACTTGATCCTAAAGACTCTGGTAACCATGTGGTGCTTTCTAACTTGCTTGCTGCTACTGGCAGGTGGGAAGAAGCCACTCTTGTCAGAAAGGAAATGAAAGATGTTGGCATAAAAAAGGGTGCAGGCTACAGTTGGATTGCAGTCAAGAATGCAGTCCACATCTTCCAAGCAAAGGACACCTCTCATGAAATGAACTCTGAGATTCAGGCAATGCTGATCTATTTAAGGACGAAAATGGAGGAAGCTGGGTACGTTCCGGACACCAATTTTGCCCTGTTTGATTTAGAAGAAGAAGAGAAAGTATCAGAAGTTTGGTACCACAGCGAGAAGATTGCCCTTGCCTTTGGCCTCATAGCTATCCCTTCTGGGTTGCCTATAAGGATTAACAAAAACCTTAGGATTTGTGGAGATTGCCACGGTGCAATCAAATTCATTTCAGGTATTGTAGACAGAGAAATTATTGTCAGAGACAACAATCGTTTTCATCGCTTTAGAGAAGGTCATTGCTCCTGTAGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006081 GO:0006082 GO:0006084 GO:0006090 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009451 GO:0009987 GO:0016070 GO:0016125 GO:0016787 GO:0016788 GO:0019287 GO:0019288 GO:0019637 GO:0019682 GO:0019693 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0032787 GO:0033865 GO:0033875 GO:0034032 GO:0034046 GO:0034641 GO:0035383 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0048364 GO:0048731 GO:0048856 GO:0050790 GO:0051186 GO:0055086 GO:0065007 GO:0065009 GO:0070717 GO:0071704 GO:0072521 GO:0090304 GO:0090305 GO:0090407 GO:0097159 GO:0099402 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

685

Amino Acids

75.7

Weight (kDa)

7.26

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	72 - 116	1.5e-07	PPR repeat family
PPR_2	PF13041	375 - 415	8.7e-06	PPR repeat family
E_motif	PF20431	494 - 555	4.7e-18	E motif
DYW_deaminase	PF14432	592 - 684	1.2e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14850
fragaria_vesca	FvH4_6g27530
malus_domestica	MD13G1194200.v1.1
prunus_persica	Prupe.1G015100_v2.0.a1
pyrus_communis	pycom13g16650
rosa_chinensis	RchiOBHm_Chr2g0129921
rosa_laevigata	RLG00000019107 RLG00000019111
rosa_multiflora	Rmu_co8468659.1_g000001 Rmu_sc0009663.1_g000015
rosa_roxburghii	Rroxscaffold_2G00114230
rosa_rugosa	Rorug02G0290300 Rorug02G0290300 Rorug02G0290300
rosa_samantha	Rh2AG341700 Rh2BG349700 Rh2CG328900
rosa_wichuraiana	Rw2G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1578
AasI	GACNNNNNNGTC	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	1578
Acc65I	GGTACC	1 cut(s)	1842
AccB1I	GGYRCC	2 cut(s)	564, 1842
AccBSI	CCGCTC	4 cut(s)	60, 213, 275, 1277
AccI	GTMKAC	2 cut(s)	1157, 1974
AccII	CGCG	2 cut(s)	303, 1401
AccIII	TCCGGA	2 cut(s)	962, 1783
AclWI	GGATC	1 cut(s)	1526
AcoI	YGGCCR	1 cut(s)	368
AcsI	RAATTY	3 cut(s)	622, 1123, 1955
AcyI	GRCGYC	1 cut(s)	565
AfaI	GTAC	4 cut(s)	155, 458, 1778, 1844
AfeI	AGCGCT	1 cut(s)	577
AfiI	CCNNNNNNNGG	5 cut(s)	377, 568, 1452, 1496, 1699
AflIII	ACRYGT	5 cut(s)	150, 426, 453, 540, 1059
AgsI	TTSAA	6 cut(s)	346, 980, 1119, 1314, 1337, 1526
AjiI	CACGTC	1 cut(s)	427
AjnI	CCWGG	2 cut(s)	224, 1339
AleI	CACNNNNGTG	1 cut(s)	1247
AluBI	AGCT	5 cut(s)	126, 187, 1385, 1772, 1883
AluI	AGCT	5 cut(s)	126, 187, 1385, 1772, 1883
Alw21I	GWGCWC	1 cut(s)	839
Alw26I	GTCTC	1 cut(s)	1989
AlwI	GGATC	1 cut(s)	1526
Ama87I	CYCGRG	1 cut(s)	1463
Aor13HI	TCCGGA	2 cut(s)	962, 1783
Aor51HI	AGCGCT	1 cut(s)	577
AoxI	GGCC	5 cut(s)	348, 368, 408, 1188, 1873
ApeKI	GCWGC	3 cut(s)	358, 848, 1577
ApoI	RAATTY	3 cut(s)	622, 1123, 1955
ArsI	GACNNNNNNTTYG	4 cut(s)	1505, 1537, 1778, 1810
Asp718I	GGTACC	1 cut(s)	1842
AspLEI	GCGC	6 cut(s)	300, 341, 567, 578, 1003, 1403
AspS9I	GGNCC	2 cut(s)	228, 388
AsuC2I	CCSGG	4 cut(s)	73, 355, 412, 569
AsuHPI	GGTGA	8 cut(s)	61, 110, 214, 319, 385, 583, 1021, 1292
AvaI	CYCGRG	1 cut(s)	1463
AvaII	GGWCC	2 cut(s)	228, 388
AxyI	CCTNAGG	1 cut(s)	1922
BanI	GGYRCC	2 cut(s)	564, 1842
BanII	GRGCYC	1 cut(s)	1459
Bbv12I	GWGCWC	1 cut(s)	839
BbvI	GCAGC	3 cut(s)	345, 835, 1564
BccI	CCATC	5 cut(s)	56, 787, 1019, 1138, 1384
BceAI	ACGGC	2 cut(s)	386, 1197
BcgI	CGANNNNNNTGC	4 cut(s)	535, 569, 1841, 1875
BciT130I	CCWGG	2 cut(s)	226, 1341
BclI	TGATCA	1 cut(s)	1128
BcnI	CCSGG	4 cut(s)	73, 355, 412, 569
BcoDI	GTCTC	1 cut(s)	1989
BfaI	CTAG	2 cut(s)	789, 1376
BfmI	CTRYAG	2 cut(s)	1654, 2038
BfoI	RGCGCY	2 cut(s)	568, 579
BfuAI	ACCTGC	1 cut(s)	1578
BglI	GCCNNNNNGGC	3 cut(s)	347, 407, 1181
BglII	AGATCT	1 cut(s)	1302
BisI	GCNGC	7 cut(s)	30, 81, 301, 359, 849, 1509, 1578
BlsI	GCNGC	7 cut(s)	31, 82, 302, 360, 850, 1510, 1579
Bme1390I	CCNGG	6 cut(s)	73, 226, 355, 412, 569, 1341
Bme18I	GGWCC	2 cut(s)	228, 388
BmeT110I	CYCGRG	1 cut(s)	1463
BmgBI	CACGTC	1 cut(s)	427
BmgT120I	GGNCC	2 cut(s)	228, 388
BmiI	GGNNCC	5 cut(s)	518, 566, 618, 1217, 1844
BmrFI	CCNGG	6 cut(s)	73, 226, 355, 412, 569, 1341
BmsI	GCATC	5 cut(s)	472, 696, 1078, 1101, 1413
BpuMI	CCSGG	4 cut(s)	73, 355, 412, 569
BsaHI	GRCGYC	1 cut(s)	565
BsaJI	CCNNGG	3 cut(s)	840, 1340, 1942
BsaWI	WCCGGW	2 cut(s)	962, 1783
BsaXI	ACNNNNNCTCC	6 cut(s)	140, 153, 170, 183, 898, 928
Bsc4I	CCNNNNNNNGG	5 cut(s)	377, 568, 1452, 1496, 1699
Bse118I	RCCGGY	3 cut(s)	366, 370, 561
Bse1I	ACTGG	2 cut(s)	472, 1588
Bse21I	CCTNAGG	1 cut(s)	1922
Bse3DI	GCAATG	2 cut(s)	1743, 2029
BseAI	TCCGGA	2 cut(s)	962, 1783
BseBI	CCWGG	2 cut(s)	226, 1341
BseDI	CCNNGG	3 cut(s)	840, 1340, 1942
BseGI	GGATG	4 cut(s)	781, 798, 1030, 1395
BseLI	CCNNNNNNNGG	5 cut(s)	377, 568, 1452, 1496, 1699
BseMI	GCAATG	2 cut(s)	1743, 2029
BseMII	CTCAG	3 cut(s)	501, 941, 1716
BseNI	ACTGG	2 cut(s)	472, 1588
BseRI	GAGGAG	7 cut(s)	52, 179, 182, 269, 884, 887, 1214
BseX3I	CGGCCG	1 cut(s)	368
BseXI	GCAGC	3 cut(s)	345, 835, 1564
BseYI	CCCAGC	4 cut(s)	122, 183, 1385, 1772
BsgI	GTGCAG	3 cut(s)	460, 878, 1668
Bsh1236I	CGCG	2 cut(s)	303, 1401
Bsh1285I	CGRYCG	1 cut(s)	371
BshFI	GGCC	5 cut(s)	350, 370, 410, 1190, 1875
BshNI	GGYRCC	2 cut(s)	564, 1842
BsiEI	CGRYCG	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	839
BsiHKCI	CYCGRG	1 cut(s)	1463
BsiSI	CCGG	9 cut(s)	72, 354, 367, 371, 411, 562, 569, 963, 1784
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	5 cut(s)	377, 568, 1452, 1496, 1699
BsmAI	GTCTC	1 cut(s)	1989
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	5 cut(s)	538, 553, 655, 1144, 1681
BsnI	GGCC	5 cut(s)	350, 370, 410, 1190, 1875
BsoBI	CYCGRG	1 cut(s)	1463
Bsp1286I	GDGCHC	2 cut(s)	839, 1459
Bsp13I	TCCGGA	2 cut(s)	962, 1783
Bsp143I	GATC	5 cut(s)	375, 1128, 1302, 1531, 1743
Bsp19I	CCATGG	1 cut(s)	840
BspANI	GGCC	5 cut(s)	350, 370, 410, 1190, 1875
BspCNI	CTCAG	3 cut(s)	502, 942, 1717
BspEI	TCCGGA	2 cut(s)	962, 1783
BspFNI	CGCG	2 cut(s)	303, 1401
BspHI	TCATGA	1 cut(s)	1711
BspLI	GGNNCC	5 cut(s)	518, 566, 618, 1217, 1844
BspMI	ACCTGC	1 cut(s)	1578
BspPI	GGATC	1 cut(s)	1526
BspQI	GCTCTTC	1 cut(s)	1464
BspT107I	GGYRCC	2 cut(s)	564, 1842
BsrBI	CCGCTC	4 cut(s)	60, 213, 275, 1277
BsrDI	GCAATG	2 cut(s)	1743, 2029
BsrFI	RCCGGY	3 cut(s)	366, 370, 561
BsrI	ACTGG	2 cut(s)	472, 1588
BssAI	RCCGGY	3 cut(s)	366, 370, 561
BssECI	CCNNGG	3 cut(s)	840, 1340, 1942
BssMI	GATC	5 cut(s)	375, 1128, 1302, 1531, 1743
BssNAI	GTATAC	1 cut(s)	1158
BssNI	GRCGYC	1 cut(s)	565
BssT1I	CCWWGG	1 cut(s)	840
Bst1107I	GTATAC	1 cut(s)	1158
Bst2UI	CCWGG	2 cut(s)	226, 1341
Bst4CI	ACNGT	4 cut(s)	260, 1326, 1658, 1946
Bst6I	CTCTTC	2 cut(s)	1464, 1815
BstACI	GRCGYC	1 cut(s)	565
BstC8I	GCNNGC	9 cut(s)	78, 368, 883, 900, 1005, 1298, 1383, 1575, 1651
BstDEI	CTNAG	4 cut(s)	510, 950, 1725, 1922
BstDSI	CCRYGG	2 cut(s)	840, 1942
BstEII	GGTNACC	1 cut(s)	1547
BstF5I	GGATG	4 cut(s)	781, 798, 1030, 1395
BstFNI	CGCG	2 cut(s)	303, 1401
BstH2I	RGCGCY	2 cut(s)	568, 579
BstHHI	GCGC	6 cut(s)	300, 341, 567, 578, 1003, 1403
BstKTI	GATC	5 cut(s)	378, 1131, 1305, 1534, 1746
BstMAI	GTCTC	1 cut(s)	1989
BstMBI	GATC	5 cut(s)	375, 1128, 1302, 1531, 1743
BstMCI	CGRYCG	1 cut(s)	371
BstNI	CCWGG	2 cut(s)	226, 1341
BstNSI	RCATGY	9 cut(s)	154, 298, 457, 544, 1063, 1175, 1269, 1300, 1362
BstPI	GGTNACC	1 cut(s)	1547
BstSCI	CCNGG	6 cut(s)	71, 224, 353, 410, 567, 1339
BstSFI	CTRYAG	2 cut(s)	1654, 2038
BstUI	CGCG	2 cut(s)	303, 1401
BstV1I	GCAGC	3 cut(s)	345, 835, 1564
BstX2I	RGATCY	1 cut(s)	1302
BstYI	RGATCY	1 cut(s)	1302
BstZ17I	GTATAC	1 cut(s)	1158
BstZI	CGGCCG	1 cut(s)	368
Bsu36I	CCTNAGG	1 cut(s)	1922
BsuRI	GGCC	5 cut(s)	350, 370, 410, 1190, 1875
BtgI	CCRYGG	2 cut(s)	840, 1942
BtgZI	GCGATG	5 cut(s)	34, 223, 492, 1157, 1997
BtrI	CACGTC	1 cut(s)	427
BtsCI	GGATG	4 cut(s)	781, 798, 1030, 1395
BtsI	GCAGTG	1 cut(s)	448
BtsIMutI	CAGTG	2 cut(s)	448, 741
BveI	ACCTGC	1 cut(s)	1578
Cac8I	GCNNGC	9 cut(s)	78, 368, 883, 900, 1005, 1298, 1383, 1575, 1651
CciI	TCATGA	1 cut(s)	1711
CfoI	GCGC	6 cut(s)	300, 341, 567, 578, 1003, 1403
Cfr10I	RCCGGY	3 cut(s)	366, 370, 561
Cfr13I	GGNCC	2 cut(s)	228, 388
Csp6I	GTAC	4 cut(s)	154, 457, 1777, 1843
CviQI	GTAC	4 cut(s)	154, 457, 1777, 1843
DdeI	CTNAG	4 cut(s)	510, 950, 1725, 1922
DinI	GGCGCC	1 cut(s)	566
DpnI	GATC	5 cut(s)	377, 1130, 1304, 1533, 1745
DpnII	GATC	5 cut(s)	375, 1128, 1302, 1531, 1743
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
EaeI	YGGCCR	1 cut(s)	368
EagI	CGGCCG	1 cut(s)	368
Eam1104I	CTCTTC	2 cut(s)	1464, 1815
EarI	CTCTTC	2 cut(s)	1464, 1815
EciI	GGCGGA	2 cut(s)	34, 169
EclXI	CGGCCG	1 cut(s)	368
Eco130I	CCWWGG	1 cut(s)	840
Eco147I	AGGCCT	1 cut(s)	350
Eco24I	GRGCYC	1 cut(s)	1459
Eco47I	GGWCC	2 cut(s)	228, 388
Eco47III	AGCGCT	1 cut(s)	577
Eco52I	CGGCCG	1 cut(s)	368
Eco81I	CCTNAGG	1 cut(s)	1922
Eco88I	CYCGRG	1 cut(s)	1463
Eco91I	GGTNACC	1 cut(s)	1547
EcoO65I	GGTNACC	1 cut(s)	1547
EcoRI	GAATTC	1 cut(s)	622
EcoRII	CCWGG	2 cut(s)	224, 1339
EcoT14I	CCWWGG	1 cut(s)	840
EcoT22I	ATGCAT	1 cut(s)	1360
EcoT38I	GRGCYC	1 cut(s)	1459
EgeI	GGCGCC	1 cut(s)	566
EheI	GGCGCC	1 cut(s)	566
ErhI	CCWWGG	1 cut(s)	840
FalI	AAGNNNNNCTT	2 cut(s)	1590, 1622
FaqI	GGGAC	1 cut(s)	299
FauI	CCCGC	5 cut(s)	65, 218, 601, 891, 1270
FbaI	TGATCA	1 cut(s)	1128
FblI	GTMKAC	2 cut(s)	1157, 1974
Fnu4HI	GCNGC	7 cut(s)	30, 81, 301, 359, 849, 1509, 1578
FokI	GGATG	4 cut(s)	788, 805, 1037, 1402
FriOI	GRGCYC	1 cut(s)	1459
Fsp4HI	GCNGC	7 cut(s)	30, 81, 301, 359, 849, 1509, 1578
FspBI	CTAG	2 cut(s)	789, 1376
GlaI	GCGC	6 cut(s)	299, 340, 566, 577, 1002, 1402
GluI	GCNGC	7 cut(s)	30, 81, 301, 359, 849, 1509, 1578
GsaI	CCCAGC	4 cut(s)	126, 187, 1389, 1776
HaeII	RGCGCY	2 cut(s)	568, 579
HaeIII	GGCC	5 cut(s)	350, 370, 410, 1190, 1875
HapII	CCGG	9 cut(s)	72, 354, 367, 371, 411, 562, 569, 963, 1784
HhaI	GCGC	6 cut(s)	300, 341, 567, 578, 1003, 1403
Hin1I	GRCGYC	1 cut(s)	565
Hin6I	GCGC	6 cut(s)	298, 339, 565, 576, 1001, 1401
HinP1I	GCGC	6 cut(s)	298, 339, 565, 576, 1001, 1401
HincII	GTYRAC	1 cut(s)	1057
HindII	GTYRAC	1 cut(s)	1057
HinfI	GANTC	4 cut(s)	305, 1310, 1541, 1729
HpaII	CCGG	9 cut(s)	72, 354, 367, 371, 411, 562, 569, 963, 1784
HphI	GGTGA	8 cut(s)	61, 110, 214, 319, 385, 583, 1021, 1292
Hpy166II	GTNNAC	6 cut(s)	391, 1057, 1158, 1369, 1684, 1975
Hpy188I	TCNGA	9 cut(s)	101, 380, 648, 661, 951, 1613, 1726, 1834, 1994
Hpy188III	TCNNGA	5 cut(s)	773, 963, 1672, 1712, 1784
Hpy8I	GTNNAC	6 cut(s)	391, 1057, 1158, 1369, 1684, 1975
Hpy99I	CGWCG	1 cut(s)	221
HpyCH4III	ACNGT	4 cut(s)	260, 1326, 1658, 1946
HpyCH4IV	ACGT	2 cut(s)	426, 1779
HpyF3I	CTNAG	4 cut(s)	510, 950, 1725, 1922
HpySE526I	ACGT	2 cut(s)	426, 1779
Hsp92I	GRCGYC	1 cut(s)	565
HspAI	GCGC	6 cut(s)	298, 339, 565, 576, 1001, 1401
KasI	GGCGCC	1 cut(s)	564
Kpn2I	TCCGGA	2 cut(s)	962, 1783
KpnI	GGTACC	1 cut(s)	1846
KroI	GCCGGC	1 cut(s)	366
KroNI	GCCGGC	1 cut(s)	368
Ksp22I	TGATCA	1 cut(s)	1128
Kzo9I	GATC	5 cut(s)	375, 1128, 1302, 1531, 1743
LguI	GCTCTTC	1 cut(s)	1464
LmnI	GCTCC	7 cut(s)	65, 192, 218, 616, 842, 1215, 2039
Lsp1109I	GCAGC	3 cut(s)	345, 835, 1564
LweI	GCATC	5 cut(s)	472, 696, 1078, 1101, 1413
MaeI	CTAG	2 cut(s)	789, 1376
MaeII	ACGT	2 cut(s)	426, 1779
MaeIII	GTNAC	5 cut(s)	220, 422, 1208, 1240, 1547
MalI	GATC	5 cut(s)	377, 1130, 1304, 1533, 1745
MbiI	CCGCTC	4 cut(s)	60, 213, 275, 1277
MboI	GATC	5 cut(s)	375, 1128, 1302, 1531, 1743
MboII	GAAGA	8 cut(s)	1097, 1451, 1607, 1681, 1826, 1829, 1832, 1867
MflI	RGATCY	1 cut(s)	1302
MhlI	GDGCHC	2 cut(s)	839, 1459
Mly113I	GGCGCC	1 cut(s)	565
MlyI	GAGTC	2 cut(s)	299, 1535
MmeI	TCCRAC	5 cut(s)	133, 159, 1115, 1460, 1640
Mph1103I	ATGCAT	1 cut(s)	1360
MroI	TCCGGA	2 cut(s)	962, 1783
MroNI	GCCGGC	1 cut(s)	366
MseI	TTAA	3 cut(s)	1227, 1751, 1911
MslI	CAYNNNNRTG	4 cut(s)	149, 293, 1247, 1249
MspI	CCGG	9 cut(s)	72, 354, 367, 371, 411, 562, 569, 963, 1784
MspR9I	CCNGG	6 cut(s)	73, 226, 355, 412, 569, 1341
Mva1269I	GAATGC	5 cut(s)	538, 553, 655, 1144, 1681
MvaI	CCWGG	2 cut(s)	226, 1341
MvnI	CGCG	2 cut(s)	303, 1401
NaeI	GCCGGC	1 cut(s)	368
NarI	GGCGCC	1 cut(s)	565
NciI	CCSGG	4 cut(s)	73, 355, 412, 569
NcoI	CCATGG	1 cut(s)	840
NdeII	GATC	5 cut(s)	375, 1128, 1302, 1531, 1743
NgoMIV	GCCGGC	1 cut(s)	366
NlaIV	GGNNCC	5 cut(s)	518, 566, 618, 1217, 1844
NmeAIII	GCCGAG	1 cut(s)	1117
NmuCI	GTSAC	4 cut(s)	220, 422, 1208, 1240
NsiI	ATGCAT	1 cut(s)	1360
NspI	RCATGY	9 cut(s)	154, 298, 457, 544, 1063, 1175, 1269, 1300, 1362
OliI	CACNNNNGTG	1 cut(s)	1247
PaeI	GCATGC	1 cut(s)	1300
PagI	TCATGA	1 cut(s)	1711
PaqCI	CACCTGC	1 cut(s)	1578
PceI	AGGCCT	1 cut(s)	350
PciI	ACATGT	4 cut(s)	150, 453, 540, 1059
PciSI	GCTCTTC	1 cut(s)	1464
PcsI	WCGNNNNNNNCGW	1 cut(s)	399
PctI	GAATGC	5 cut(s)	538, 553, 655, 1144, 1681
PdiI	GCCGGC	1 cut(s)	368
PfeI	GAWTC	2 cut(s)	1310, 1729
PflFI	GACNNNGTC	1 cut(s)	308
PkrI	GCNGC	7 cut(s)	31, 82, 302, 360, 850, 1510, 1579
PleI	GAGTC	2 cut(s)	299, 1535
PluTI	GGCGCC	1 cut(s)	568
PpsI	GAGTC	2 cut(s)	299, 1535
PscI	ACATGT	4 cut(s)	150, 453, 540, 1059
Psp6I	CCWGG	2 cut(s)	224, 1339
PspEI	GGTNACC	1 cut(s)	1547
PspFI	CCCAGC	4 cut(s)	122, 183, 1385, 1772
PspGI	CCWGG	2 cut(s)	224, 1339
PspN4I	GGNNCC	5 cut(s)	518, 566, 618, 1217, 1844
PspPI	GGNCC	2 cut(s)	228, 388
PsuI	RGATCY	1 cut(s)	1302
PsyI	GACNNNGTC	1 cut(s)	308
RsaI	GTAC	4 cut(s)	155, 458, 1778, 1844
RsaNI	GTAC	4 cut(s)	154, 457, 1777, 1843
RseI	CAYNNNNRTG	4 cut(s)	149, 293, 1247, 1249
SapI	GCTCTTC	1 cut(s)	1464
SaqAI	TTAA	3 cut(s)	1227, 1751, 1911
SatI	GCNGC	7 cut(s)	30, 81, 301, 359, 849, 1509, 1578
Sau3AI	GATC	5 cut(s)	375, 1128, 1302, 1531, 1743
Sau96I	GGNCC	2 cut(s)	228, 388
SchI	GAGTC	2 cut(s)	299, 1535
ScrFI	CCNGG	6 cut(s)	73, 226, 355, 412, 569, 1341
SduI	GDGCHC	2 cut(s)	839, 1459
SfaNI	GCATC	5 cut(s)	472, 696, 1078, 1101, 1413
SfcI	CTRYAG	2 cut(s)	1654, 2038
SfoI	GGCGCC	1 cut(s)	566
SinI	GGWCC	2 cut(s)	228, 388
SmiMI	CAYNNNNRTG	4 cut(s)	149, 293, 1247, 1249
SphI	GCATGC	1 cut(s)	1300
SseBI	AGGCCT	1 cut(s)	350
SspDI	GGCGCC	1 cut(s)	564
SspMI	CTAG	2 cut(s)	789, 1376
StuI	AGGCCT	1 cut(s)	350
StyD4I	CCNGG	6 cut(s)	71, 224, 353, 410, 567, 1339
StyI	CCWWGG	1 cut(s)	840
TaaI	ACNGT	4 cut(s)	260, 1326, 1658, 1946
TaiI	ACGT	2 cut(s)	429, 1782
TaqI	TCGA	4 cut(s)	165, 545, 941, 1197
TatI	WGTACW	2 cut(s)	153, 456
TauI	GCSGC	4 cut(s)	32, 83, 303, 1511
TfiI	GAWTC	2 cut(s)	1310, 1729
Tru1I	TTAA	3 cut(s)	1227, 1751, 1911
Tru9I	TTAA	3 cut(s)	1227, 1751, 1911
TscAI	CASTG	2 cut(s)	448, 741
TseFI	GTSAC	4 cut(s)	220, 422, 1208, 1240
TseI	GCWGC	3 cut(s)	358, 848, 1577
Tsp45I	GTSAC	4 cut(s)	220, 422, 1208, 1240
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	2 cut(s)	448, 741
Tth111I	GACNNNGTC	1 cut(s)	308
VpaK11BI	GGWCC	2 cut(s)	228, 388
XapI	RAATTY	3 cut(s)	622, 1123, 1955
XceI	RCATGY	9 cut(s)	154, 298, 457, 544, 1063, 1175, 1269, 1300, 1362
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1183
XmiI	GTMKAC	2 cut(s)	1157, 1974
XspI	CTAG	2 cut(s)	789, 1376
Zsp2I	ATGCAT	1 cut(s)	1360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.