Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0013045

Physical Location & Seq

Genomic Coordinates Forward (+)

43841628 .. 43844096

Gene Structure 2469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G027750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1974 bp

ATGCCATCCCTCACTCCCAACTCCCTCGCCTCCCTTCTCCAATCCGCCGTCTCCACTCGCTCTTCTCTTCTGGGCCGAGCCGCCCACGCCCATATCATCAGAACCCTCCAACCCCCACACCCCTCCTTCCTCTCCAACCACCTCGTCAACATGTACGCCAAACTCGACCTCCCCAACTCCGCCCAACTCGTCCTCCACCTCACCCCCTCCCCCTCCGTCGTCACCTGGACCGCCCTCATCGCCGGCCTTGTCCACAACCGTCATTTCGCCTCCGCTCTCCTCCACTTCGCTAACATGCGTCGCCACTCCGTCCGCCCCAACGACTTCACATTCCCCTGCGCCTTCAAGGCCTCCGGCTTGCTTCGTCTCCCGGTGGTCGGAAAACAGATATGTGATGTCTTTGTTGGGTGCAGTGCTTTTGATATGTACTGCAAAACTGGGCTGAGAGACGATGCAGGGAAGTGTTTGATGAAATGCCTGAGAGAAACCTTGCTACTTGGAATGCCTACATTTCGAATGCGGTGCTTGACGGCGGCCGGTGAGTGCTCCGAATTCGATTACCTTCTGTGCATTTCTCAATGCCTGTTCGGATACGTCCGCTTTGGAACTTGGGAGGCAGTTACATGGGTTTGTGATGCGATGTGGGTTGGGAAAGATGTGTCAGTGCTCAATGGGCTTGTGGATTTTTATGGCAAGTGTCGGGATGTTGGGTCGTCTAAGATGGTTTTCGATAGAATTGGTGAGGCTAATCATGTCTCTTGGTGCTCCATGGTGGCTGCTTATGTGCAAAACTATGAGGAGGAGAAGGCTTGTGAGTTGTTTTTGCGGGCTAGGAGAGAAAGGGTTGAGCCGACGGATTTCATGGTTTCAAGTGTTTTGAGTGCTTGTTCTGGACTCGCGTGGCTTGAACAGGGTAGGTCAGTTCATGCGCTTGCGGTGAAGGCTTGTGTGGACGGAAATGTCTTTGTTGGGAGTGCACTCGTTGACATGTATGGAAAATGTGGGAGTATAGAAGATGCCGAGTGTGCATTTGATGCGATGCCTACAAGGAACCTGATCAGTTGGAATGCGATGGTGGGTGGGTATACGCATCAAGGACATGCCGACATGGCTCTTGCATTGTTTGAGGAGATGAGTGCGGGAAGCCATGAGGTTAAACCGAATTATGTCACATTGGTGTGTGTATTGTCAGCATGTAGCAGGGCGGGGGCTGTTCAAAAGGGCATGCAGATCTTTGATTCAATGAAACACAGGTATGGTGTTGAACCAGGGGCAGAGCATTATGCATGTGTTGTGGACTTGCTAGGGCGAGCTGGGATGGTAGAGCATGCTTACGAGTTTATTACAAAGATGCCAATTAATCCAACAATTTCCATTTGGGGTGCTCTTCTTGGGGCTTGTAAAATGTATAGGAAGCCAGAATTGGGGAAGATTGCGGCTCACAAGTTATTTGAACTTGATCCTAAAGACTCTGGCAACCATGTGGTGCTTTCTAATTTGCTTGCAGCAACTGGCAGAAGCCACTCTTGTGAGAAAGGAGATGAAAGATGTTGGCATAAAAAGGGTGCAGGCTACAGTTGGATCGCAGTCAAGAATGCAGTCCACATCTTCCAAGCAAAGGACACCTCCCATGAAATGAATTCTGAAATTCAGGCAATGCTGACCTATTTAAGGAGGAAAATGCAGGAAGCTGGGTACGTTCCAGATACAAATTTTGCTCTGTTTGATTTAGAAGAAGAAGAGAAAGTATCGGAAGTTTGGTACCACAGCGAGAAGATTGCCCTTGCCTTTGGCCTCATATCTATCCCTTCTGGGTTGCCAATAAGGATTAACAAAAACCTTAGGATCTGTGGAGATTGCCATGGTGCAATCAAATTCATATCAGGTATTGTGGACAGAGAAATTATTGTCAGGGATAACAATCGTTTTCATTGCTTTAGAGATGGCCATTGCTCCTGTAGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006081 GO:0006082 GO:0006084 GO:0006090 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009451 GO:0009987 GO:0016070 GO:0016125 GO:0016787 GO:0016788 GO:0019287 GO:0019288 GO:0019637 GO:0019682 GO:0019693 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0032787 GO:0033865 GO:0033875 GO:0034032 GO:0034046 GO:0034641 GO:0035383 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0048364 GO:0048731 GO:0048856 GO:0050790 GO:0051186 GO:0055086 GO:0065007 GO:0065009 GO:0070717 GO:0071704 GO:0072521 GO:0090304 GO:0090305 GO:0090407 GO:0097159 GO:0099402 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

657

Amino Acids

72.9

Weight (kDa)

7.51

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	71 - 116	1.6e-08	PPR repeat family
PPR_2	PF13041	351 - 399	9.3e-07	PPR repeat family
E_motif	PF20431	471 - 512	4.8e-07	E motif
DYW_deaminase	PF14432	565 - 657	1e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14850
fragaria_vesca	FvH4_6g27530
malus_domestica	MD13G1194200.v1.1
prunus_persica	Prupe.1G015100_v2.0.a1
pyrus_communis	pycom13g16650
rosa_chinensis	RchiOBHm_Chr2g0129921
rosa_laevigata	RLG00000019107 RLG00000019111
rosa_multiflora	Rmu_co8468659.1_g000001 Rmu_sc0009663.1_g000015
rosa_roxburghii	Rroxscaffold_2G00114230
rosa_rugosa	Rorug02G0290300 Rorug02G0290300 Rorug02G0290300
rosa_samantha	Rh2AG341700 Rh2BG349700 Rh2CG328900
rosa_wichuraiana	Rw2G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	959
Acc65I	GGTACC	1 cut(s)	1761
AccB1I	GGYRCC	1 cut(s)	1761
AccBSI	CCGCTC	1 cut(s)	275
AccI	GTMKAC	1 cut(s)	1085
AccII	CGCG	1 cut(s)	899
AclWI	GGATC	3 cut(s)	1454, 1589, 1853
AcoI	YGGCCR	2 cut(s)	534, 1945
AcsI	RAATTY	5 cut(s)	551, 1639, 1647, 1711, 1874
AfaI	GTAC	4 cut(s)	155, 428, 1697, 1763
AfiI	CCNNNNNNNGG	4 cut(s)	377, 1424, 1618, 1671
AflIII	ACRYGT	2 cut(s)	150, 987
AgsI	TTSAA	7 cut(s)	346, 870, 908, 1217, 1242, 1265, 1454
AjnI	CCWGG	2 cut(s)	224, 1267
AjuI	GAANNNNNNNTTGG	2 cut(s)	1406, 1438
AleI	CACNNNNGTG	2 cut(s)	1175, 1527
AluBI	AGCT	2 cut(s)	1313, 1691
AluI	AGCT	2 cut(s)	1313, 1691
Alw21I	GWGCWC	5 cut(s)	548, 669, 767, 979, 1387
Alw26I	GTCTC	4 cut(s)	55, 371, 441, 760
Alw44I	GTGCAC	1 cut(s)	975
AlwI	GGATC	3 cut(s)	1454, 1589, 1853
AlwNI	CAGNNNCTG	1 cut(s)	1511
AoxI	GGCC	6 cut(s)	73, 244, 348, 534, 1792, 1945
ApaLI	GTGCAC	1 cut(s)	975
ApeKI	GCWGC	2 cut(s)	776, 1505
ApoI	RAATTY	5 cut(s)	551, 1639, 1647, 1711, 1874
AseI	ATTAAT	1 cut(s)	1359
Asp718I	GGTACC	1 cut(s)	1761
AspLEI	GCGC	2 cut(s)	341, 931
AspS9I	GGNCC	2 cut(s)	73, 228
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	5 cut(s)	193, 214, 551, 752, 949
AsuII	TTCGAA	1 cut(s)	514
AvaII	GGWCC	1 cut(s)	228
AxyI	CCTNAGG	1 cut(s)	1841
BaeGI	GKGCMC	1 cut(s)	979
BalI	TGGCCA	1 cut(s)	1947
BanI	GGYRCC	1 cut(s)	1761
Bbv12I	GWGCWC	5 cut(s)	548, 669, 767, 979, 1387
BbvI	GCAGC	2 cut(s)	763, 1517
BccI	CCATC	5 cut(s)	13, 715, 1066, 1312, 1937
BceAI	ACGGC	2 cut(s)	32, 546
BcgI	CGANNNNNNTGC	4 cut(s)	504, 538, 1760, 1794
BciT130I	CCWGG	2 cut(s)	226, 1269
BciVI	GTATCC	1 cut(s)	584
BclI	TGATCA	1 cut(s)	1056
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	4 cut(s)	55, 371, 441, 760
BfaI	CTAG	2 cut(s)	831, 1304
BfmI	CTRYAG	2 cut(s)	1573, 1957
BfuI	GTATCC	1 cut(s)	584
BglI	GCCNNNNNGGC	2 cut(s)	347, 1109
BglII	AGATCT	1 cut(s)	1230
BisI	GCNGC	5 cut(s)	81, 534, 777, 1437, 1506
BlsI	GCNGC	5 cut(s)	82, 535, 778, 1438, 1507
Bme1390I	CCNGG	3 cut(s)	226, 371, 1269
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	73, 228
BmiI	GGNNCC	2 cut(s)	1052, 1763
BmrFI	CCNGG	3 cut(s)	226, 371, 1269
BmrI	ACTGGG	1 cut(s)	447
BmsI	GCATC	7 cut(s)	442, 625, 1006, 1024, 1029, 1099, 1341
BmuI	ACTGGG	1 cut(s)	447
Bpu14I	TTCGAA	1 cut(s)	514
BpuMI	CCSGG	1 cut(s)	371
BsaBI	GATNNNNATC	1 cut(s)	1920
BsaJI	CCNNGG	3 cut(s)	768, 1268, 1861
BsaXI	ACNNNNNCTCC	4 cut(s)	153, 177, 183, 207
Bsc4I	CCNNNNNNNGG	4 cut(s)	377, 1424, 1618, 1671
Bse118I	RCCGGY	2 cut(s)	242, 536
Bse1I	ACTGG	2 cut(s)	442, 1516
Bse21I	CCTNAGG	1 cut(s)	1841
Bse3DI	GCAATG	3 cut(s)	1662, 1930, 1948
Bse8I	GATNNNNATC	1 cut(s)	1920
BseBI	CCWGG	2 cut(s)	226, 1269
BseDI	CCNNGG	3 cut(s)	768, 1268, 1861
BseGI	GGATG	3 cut(s)	5, 709, 1323
BseJI	GATNNNNATC	1 cut(s)	1920
BseLI	CCNNNNNNNGG	4 cut(s)	377, 1424, 1618, 1671
BseMI	GCAATG	3 cut(s)	1662, 1930, 1948
BseMII	CTCAG	2 cut(s)	434, 470
BseNI	ACTGG	2 cut(s)	442, 1516
BseRI	GAGGAG	4 cut(s)	269, 812, 815, 1142
BseSI	GKGCMC	1 cut(s)	979
BseX3I	CGGCCG	1 cut(s)	534
BseXI	GCAGC	2 cut(s)	763, 1517
BseYI	CCCAGC	2 cut(s)	1313, 1691
BsgI	GTGCAG	2 cut(s)	430, 1587
Bsh1236I	CGCG	1 cut(s)	899
Bsh1285I	CGRYCG	1 cut(s)	537
BshFI	GGCC	6 cut(s)	75, 246, 350, 536, 1794, 1947
BshNI	GGYRCC	1 cut(s)	1761
BsiEI	CGRYCG	1 cut(s)	537
BsiHKAI	GWGCWC	5 cut(s)	548, 669, 767, 979, 1387
BsiSI	CCGG	4 cut(s)	243, 354, 371, 537
BslI	CCNNNNNNNGG	4 cut(s)	377, 1424, 1618, 1671
BsmAI	GTCTC	4 cut(s)	55, 371, 441, 760
BsmBI	CGTCTC	3 cut(s)	55, 371, 441
BsmI	GAATGC	4 cut(s)	507, 522, 1072, 1600
BsnI	GGCC	6 cut(s)	75, 246, 350, 536, 1794, 1947
Bsp119I	TTCGAA	1 cut(s)	514
Bsp1286I	GDGCHC	5 cut(s)	548, 669, 767, 979, 1387
Bsp143I	GATC	5 cut(s)	1056, 1230, 1459, 1581, 1845
Bsp19I	CCATGG	2 cut(s)	768, 1861
BspANI	GGCC	6 cut(s)	75, 246, 350, 536, 1794, 1947
BspCNI	CTCAG	2 cut(s)	435, 471
BspFNI	CGCG	1 cut(s)	899
BspLI	GGNNCC	2 cut(s)	1052, 1763
BspPI	GGATC	3 cut(s)	1454, 1589, 1853
BspQI	GCTCTTC	2 cut(s)	67, 1392
BspT104I	TTCGAA	1 cut(s)	514
BspT107I	GGYRCC	1 cut(s)	1761
BsrBI	CCGCTC	1 cut(s)	275
BsrDI	GCAATG	3 cut(s)	1662, 1930, 1948
BsrFI	RCCGGY	2 cut(s)	242, 536
BsrI	ACTGG	2 cut(s)	442, 1516
BssAI	RCCGGY	2 cut(s)	242, 536
BssECI	CCNNGG	3 cut(s)	768, 1268, 1861
BssMI	GATC	5 cut(s)	1056, 1230, 1459, 1581, 1845
BssNAI	GTATAC	1 cut(s)	1086
BssT1I	CCWWGG	2 cut(s)	768, 1861
Bst1107I	GTATAC	1 cut(s)	1086
Bst2UI	CCWGG	2 cut(s)	226, 1269
Bst4CI	ACNGT	2 cut(s)	260, 1577
Bst6I	CTCTTC	4 cut(s)	67, 72, 1392, 1734
BstAPI	GCANNNNNTGC	1 cut(s)	1034
BstBI	TTCGAA	1 cut(s)	514
BstC8I	GCNNGC	9 cut(s)	244, 359, 828, 933, 1226, 1311, 1329, 1503, 1570
BstDEI	CTNAG	4 cut(s)	443, 479, 717, 1841
BstDSI	CCRYGG	2 cut(s)	768, 1861
BstENI	CCTNNNNNAGG	1 cut(s)	1669
BstF5I	GGATG	3 cut(s)	5, 709, 1323
BstFNI	CGCG	1 cut(s)	899
BstHHI	GCGC	2 cut(s)	341, 931
BstKTI	GATC	5 cut(s)	1059, 1233, 1462, 1584, 1848
BstMAI	GTCTC	4 cut(s)	55, 371, 441, 760
BstMBI	GATC	5 cut(s)	1056, 1230, 1459, 1581, 1845
BstMCI	CGRYCG	1 cut(s)	537
BstMWI	GCNNNNNNNGC	8 cut(s)	86, 239, 347, 673, 941, 1025, 1034, 1109
BstNI	CCWGG	2 cut(s)	226, 1269
BstNSI	RCATGY	8 cut(s)	154, 298, 991, 1103, 1197, 1228, 1290, 1331
BstSCI	CCNGG	3 cut(s)	224, 369, 1267
BstSFI	CTRYAG	2 cut(s)	1573, 1957
BstSLI	GKGCMC	1 cut(s)	979
BstUI	CGCG	1 cut(s)	899
BstV1I	GCAGC	2 cut(s)	763, 1517
BstX2I	RGATCY	2 cut(s)	1230, 1845
BstYI	RGATCY	2 cut(s)	1230, 1845
BstZ17I	GTATAC	1 cut(s)	1086
BstZI	CGGCCG	1 cut(s)	534
Bsu36I	CCTNAGG	1 cut(s)	1841
BsuI	GTATCC	1 cut(s)	584
BsuRI	GGCC	6 cut(s)	75, 246, 350, 536, 1794, 1947
BtgI	CCRYGG	2 cut(s)	768, 1861
BtgZI	GCGATG	4 cut(s)	223, 653, 1052, 1085
BtsCI	GGATG	3 cut(s)	5, 709, 1323
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	418, 669
Cac8I	GCNNGC	9 cut(s)	244, 359, 828, 933, 1226, 1311, 1329, 1503, 1570
CaiI	CAGNNNCTG	1 cut(s)	1511
CfoI	GCGC	2 cut(s)	341, 931
Cfr10I	RCCGGY	2 cut(s)	242, 536
Cfr13I	GGNCC	2 cut(s)	73, 228
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	4 cut(s)	154, 427, 1696, 1762
CviQI	GTAC	4 cut(s)	154, 427, 1696, 1762
DdeI	CTNAG	4 cut(s)	443, 479, 717, 1841
DpnI	GATC	5 cut(s)	1058, 1232, 1461, 1583, 1847
DpnII	GATC	5 cut(s)	1056, 1230, 1459, 1581, 1845
DrdI	GACNNNNNNGTC	1 cut(s)	959
DseDI	GACNNNNNNGTC	1 cut(s)	959
EaeI	YGGCCR	2 cut(s)	534, 1945
EagI	CGGCCG	1 cut(s)	534
Eam1104I	CTCTTC	4 cut(s)	67, 72, 1392, 1734
EarI	CTCTTC	4 cut(s)	67, 72, 1392, 1734
EciI	GGCGGA	3 cut(s)	34, 169, 302
EclXI	CGGCCG	1 cut(s)	534
Eco130I	CCWWGG	2 cut(s)	768, 1861
Eco147I	AGGCCT	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	228
Eco52I	CGGCCG	1 cut(s)	534
Eco81I	CCTNAGG	1 cut(s)	1841
EcoNI	CCTNNNNNAGG	1 cut(s)	1669
EcoRI	GAATTC	2 cut(s)	551, 1639
EcoRII	CCWGG	2 cut(s)	224, 1267
EcoT14I	CCWWGG	2 cut(s)	768, 1861
EcoT22I	ATGCAT	1 cut(s)	1288
ErhI	CCWWGG	2 cut(s)	768, 1861
Esp3I	CGTCTC	3 cut(s)	55, 371, 441
FalI	AAGNNNNNCTT	2 cut(s)	1510, 1542
FauI	CCCGC	3 cut(s)	819, 1132, 1198
FbaI	TGATCA	1 cut(s)	1056
FblI	GTMKAC	1 cut(s)	1085
Fnu4HI	GCNGC	5 cut(s)	81, 534, 777, 1437, 1506
FokI	GGATG	2 cut(s)	716, 1330
Fsp4HI	GCNGC	5 cut(s)	81, 534, 777, 1437, 1506
FspBI	CTAG	2 cut(s)	831, 1304
GlaI	GCGC	2 cut(s)	340, 930
GluI	GCNGC	5 cut(s)	81, 534, 777, 1437, 1506
GsaI	CCCAGC	2 cut(s)	1317, 1695
HaeIII	GGCC	6 cut(s)	75, 246, 350, 536, 1794, 1947
HapII	CCGG	4 cut(s)	243, 354, 371, 537
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	2 cut(s)	341, 931
Hin6I	GCGC	2 cut(s)	339, 929
HinP1I	GCGC	2 cut(s)	339, 929
HincII	GTYRAC	2 cut(s)	148, 985
HindII	GTYRAC	2 cut(s)	148, 985
HinfI	GANTC	3 cut(s)	894, 1238, 1469
HpaII	CCGG	4 cut(s)	243, 354, 371, 537
HphI	GGTGA	5 cut(s)	193, 214, 551, 752, 949
Hpy166II	GTNNAC	9 cut(s)	148, 253, 952, 977, 985, 1086, 1297, 1603, 1894
Hpy188I	TCNGA	6 cut(s)	101, 380, 550, 590, 1645, 1753
Hpy188III	TCNNGA	4 cut(s)	701, 891, 1591, 1703
Hpy8I	GTNNAC	9 cut(s)	148, 253, 952, 977, 985, 1086, 1297, 1603, 1894
Hpy99I	CGWCG	3 cut(s)	221, 303, 856
HpyAV	CCTTC	7 cut(s)	44, 136, 352, 572, 799, 934, 1818
HpyCH4III	ACNGT	2 cut(s)	260, 1577
HpyCH4IV	ACGT	2 cut(s)	594, 1698
HpyF10VI	GCNNNNNNNGC	8 cut(s)	86, 239, 347, 673, 941, 1025, 1034, 1109
HpyF3I	CTNAG	4 cut(s)	443, 479, 717, 1841
HpySE526I	ACGT	2 cut(s)	594, 1698
HspAI	GCGC	2 cut(s)	339, 929
KpnI	GGTACC	1 cut(s)	1765
KroI	GCCGGC	1 cut(s)	242
KroNI	GCCGGC	1 cut(s)	244
Ksp22I	TGATCA	1 cut(s)	1056
Kzo9I	GATC	5 cut(s)	1056, 1230, 1459, 1581, 1845
LguI	GCTCTTC	2 cut(s)	67, 1392
LmnI	GCTCC	3 cut(s)	551, 770, 1958
Lsp1109I	GCAGC	2 cut(s)	763, 1517
LweI	GCATC	7 cut(s)	442, 625, 1006, 1024, 1029, 1099, 1341
MaeI	CTAG	2 cut(s)	831, 1304
MaeII	ACGT	2 cut(s)	594, 1698
MaeIII	GTNAC	3 cut(s)	220, 619, 1168
MalI	GATC	5 cut(s)	1058, 1232, 1461, 1583, 1847
MbiI	CCGCTC	1 cut(s)	275
MboI	GATC	5 cut(s)	1056, 1230, 1459, 1581, 1845
MflI	RGATCY	2 cut(s)	1230, 1845
MhlI	GDGCHC	5 cut(s)	548, 669, 767, 979, 1387
MlsI	TGGCCA	1 cut(s)	1947
MluNI	TGGCCA	1 cut(s)	1947
MlyI	GAGTC	2 cut(s)	888, 1463
MmeI	TCCRAC	6 cut(s)	133, 159, 358, 1043, 1388, 1559
Mox20I	TGGCCA	1 cut(s)	1947
Mph1103I	ATGCAT	1 cut(s)	1288
MroNI	GCCGGC	1 cut(s)	242
MscI	TGGCCA	1 cut(s)	1947
MseI	TTAA	4 cut(s)	1155, 1359, 1670, 1830
MslI	CAYNNNNRTG	4 cut(s)	1175, 1177, 1254, 1527
Msp20I	TGGCCA	1 cut(s)	1947
MspI	CCGG	4 cut(s)	243, 354, 371, 537
MspR9I	CCNGG	3 cut(s)	226, 371, 1269
Mva1269I	GAATGC	4 cut(s)	507, 522, 1072, 1600
MvaI	CCWGG	2 cut(s)	226, 1269
MvnI	CGCG	1 cut(s)	899
MwoI	GCNNNNNNNGC	8 cut(s)	86, 239, 347, 673, 941, 1025, 1034, 1109
NaeI	GCCGGC	1 cut(s)	244
NciI	CCSGG	1 cut(s)	371
NcoI	CCATGG	2 cut(s)	768, 1861
NdeII	GATC	5 cut(s)	1056, 1230, 1459, 1581, 1845
NgoMIV	GCCGGC	1 cut(s)	242
NlaIV	GGNNCC	2 cut(s)	1052, 1763
NmeAIII	GCCGAG	2 cut(s)	101, 1045
NmuCI	GTSAC	2 cut(s)	220, 1168
NsiI	ATGCAT	1 cut(s)	1288
NspI	RCATGY	8 cut(s)	154, 298, 991, 1103, 1197, 1228, 1290, 1331
NspV	TTCGAA	1 cut(s)	514
OliI	CACNNNNGTG	2 cut(s)	1175, 1527
PaeI	GCATGC	2 cut(s)	1228, 1331
PceI	AGGCCT	1 cut(s)	350
PciI	ACATGT	2 cut(s)	150, 987
PciSI	GCTCTTC	2 cut(s)	67, 1392
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PctI	GAATGC	4 cut(s)	507, 522, 1072, 1600
PdiI	GCCGGC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	1238
PkrI	GCNGC	5 cut(s)	82, 535, 778, 1438, 1507
PleI	GAGTC	2 cut(s)	888, 1463
PpsI	GAGTC	2 cut(s)	888, 1463
PscI	ACATGT	2 cut(s)	150, 987
PshBI	ATTAAT	1 cut(s)	1359
Psp6I	CCWGG	2 cut(s)	224, 1267
PspFI	CCCAGC	2 cut(s)	1313, 1691
PspGI	CCWGG	2 cut(s)	224, 1267
PspN4I	GGNNCC	2 cut(s)	1052, 1763
PspPI	GGNCC	2 cut(s)	73, 228
PstNI	CAGNNNCTG	1 cut(s)	1511
PsuI	RGATCY	2 cut(s)	1230, 1845
RsaI	GTAC	4 cut(s)	155, 428, 1697, 1763
RsaNI	GTAC	4 cut(s)	154, 427, 1696, 1762
RseI	CAYNNNNRTG	4 cut(s)	1175, 1177, 1254, 1527
SapI	GCTCTTC	2 cut(s)	67, 1392
SaqAI	TTAA	4 cut(s)	1155, 1359, 1670, 1830
SatI	GCNGC	5 cut(s)	81, 534, 777, 1437, 1506
Sau3AI	GATC	5 cut(s)	1056, 1230, 1459, 1581, 1845
Sau96I	GGNCC	2 cut(s)	73, 228
SchI	GAGTC	2 cut(s)	888, 1463
ScrFI	CCNGG	3 cut(s)	226, 371, 1269
SduI	GDGCHC	5 cut(s)	548, 669, 767, 979, 1387
SfaNI	GCATC	7 cut(s)	442, 625, 1006, 1024, 1029, 1099, 1341
SfcI	CTRYAG	2 cut(s)	1573, 1957
SfuI	TTCGAA	1 cut(s)	514
SinI	GGWCC	1 cut(s)	228
SmiMI	CAYNNNNRTG	4 cut(s)	1175, 1177, 1254, 1527
SphI	GCATGC	2 cut(s)	1228, 1331
SseBI	AGGCCT	1 cut(s)	350
SspMI	CTAG	2 cut(s)	831, 1304
StuI	AGGCCT	1 cut(s)	350
StyD4I	CCNGG	3 cut(s)	224, 369, 1267
StyI	CCWWGG	2 cut(s)	768, 1861
TaaI	ACNGT	2 cut(s)	260, 1577
TaiI	ACGT	2 cut(s)	597, 1701
TaqI	TCGA	4 cut(s)	165, 514, 555, 729
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	3 cut(s)	83, 536, 1439
TfiI	GAWTC	1 cut(s)	1238
Tru1I	TTAA	4 cut(s)	1155, 1359, 1670, 1830
Tru9I	TTAA	4 cut(s)	1155, 1359, 1670, 1830
TscAI	CASTG	2 cut(s)	418, 669
TseFI	GTSAC	2 cut(s)	220, 1168
TseI	GCWGC	2 cut(s)	776, 1505
Tsp45I	GTSAC	2 cut(s)	220, 1168
TspDTI	ATGAA	9 cut(s)	485, 850, 914, 1259, 1557, 1647, 1652, 1867, 1919
TspGWI	ACGGA	4 cut(s)	205, 298, 869, 969
TspRI	CASTG	2 cut(s)	418, 669
VneI	GTGCAC	1 cut(s)	975
VpaK11BI	GGWCC	1 cut(s)	228
VspI	ATTAAT	1 cut(s)	1359
XagI	CCTNNNNNAGG	1 cut(s)	1669
XapI	RAATTY	5 cut(s)	551, 1639, 1647, 1711, 1874
XceI	RCATGY	8 cut(s)	154, 298, 991, 1103, 1197, 1228, 1290, 1331
XmiI	GTMKAC	1 cut(s)	1085
XspI	CTAG	2 cut(s)	831, 1304
Zsp2I	ATGCAT	1 cut(s)	1288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.