Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8468659.1

Orthogroup ID

OG0013045

Physical Location & Seq

Genomic Coordinates Forward (+)

40 .. 1673

Gene Structure 1634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8468659.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atggtggctgcttatgtgcaaaactatgaggaggagaaggcttgtgagttgtttttgcgggctaggagagaaagggttgagccgacggatttcatggtttcaagtgttttgagtgcttgttctggactcgcgtggcttgaacagggtaggtcagttcatgcgcttgcggtgaaggcttgtgtggacggaaatgtctttgttgggagtgcactcgttgacatgtatggaaaatgtgggagtatagaagatgccgagtgtgcatttgatgcgatgcctacaaggaacctgatcagttggaatgcgatggtgggtgggtatacgcatcaaggacatgccgacatggctcttgcattgtttgaggagatgagtgcgggaagccatgaggttaaaccgaattatgtcacattggtgtgtgtattgtcagcatgtagcagggcgggggctgttcaaaagggcatgcagatctttgattcaatgaaacacaggtatggtgttgaaccaggggcagagcattatgcatgtgttgtggacttgctagggcgagctgggatggtagagcatgcttacgagtttattacaaagatgccaattaatccaacaatttccatttggggtgctcttcttggggcttgtaaaatgtataggaagccagaattggggaagattgcggctcacaagttatttgaacttgatcctaaagactctggcaaccatgtggtgctttctaatttgcttgcagcaactggcaggtgggaagaagccactcttgtgagaaaggagatgaaagatgttggcataaaaaagggtgcaggctacagttggatcgcagtcaagaatgcagtccacatcttccaagcaaaggacacctcccatgaaatgaattctgaaattcaggcaatactgacctatttaaggaggaaaatgcaggaagctgggtacgttccagatacaaattttgctctgtttgatttagaagaagaagagaaagtatcggaagtttggtaccacagcgagaagattgcccttgcctttggcctcatatctatcccttctgggttgcctataaggattaacaaaaaccttaggatctgtggagattgccatggtgcaatcaaattcatatcaggtattgtagacagagaaattattgtcagggataacaatcgttttcattgctttagagatggccattgctcctgtagagattattggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006081 GO:0006082 GO:0006084 GO:0006090 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009451 GO:0009987 GO:0016070 GO:0016125 GO:0016787 GO:0016788 GO:0019287 GO:0019288 GO:0019637 GO:0019682 GO:0019693 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0032787 GO:0033865 GO:0033875 GO:0034032 GO:0034046 GO:0034641 GO:0035383 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0048364 GO:0048731 GO:0048856 GO:0050790 GO:0051186 GO:0055086 GO:0065007 GO:0065009 GO:0070717 GO:0071704 GO:0072521 GO:0090304 GO:0090305 GO:0090407 GO:0097159 GO:0099402 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

404

Amino Acids

44.94

Weight (kDa)

6.22

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14850
fragaria_vesca	FvH4_6g27530
malus_domestica	MD13G1194200.v1.1
prunus_persica	Prupe.1G015100_v2.0.a1
pyrus_communis	pycom13g16650
rosa_chinensis	RchiOBHm_Chr2g0129921
rosa_laevigata	RLG00000019107 RLG00000019111
rosa_multiflora	Rmu_co8468659.1_g000001 Rmu_sc0009663.1_g000015
rosa_roxburghii	Rroxscaffold_2G00114230
rosa_rugosa	Rorug02G0290300 Rorug02G0290300 Rorug02G0290300
rosa_samantha	Rh2AG341700 Rh2BG349700 Rh2CG328900
rosa_wichuraiana	Rw2G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	738
AasI	GACNNNNNNGTC	1 cut(s)	191
Acc36I	ACCTGC	1 cut(s)	738
Acc65I	GGTACC	1 cut(s)	1002
AccB1I	GGYRCC	1 cut(s)	1002
AccI	GTMKAC	2 cut(s)	317, 1134
AccII	CGCG	1 cut(s)	131
AciI	CCGC	5 cut(s)	58, 167, 371, 437, 668
AclWI	GGATC	3 cut(s)	686, 830, 1094
AcoI	YGGCCR	1 cut(s)	1186
AcsI	RAATTY	4 cut(s)	880, 888, 952, 1115
AfaI	GTAC	2 cut(s)	938, 1004
AfiI	CCNNNNNNNGG	3 cut(s)	656, 859, 912
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	6 cut(s)	102, 140, 449, 474, 497, 686
AjnI	CCWGG	1 cut(s)	499
AjuI	GAANNNNNNNTTGG	2 cut(s)	638, 670
AleI	CACNNNNGTG	2 cut(s)	407, 767
AluBI	AGCT	2 cut(s)	545, 932
AluI	AGCT	2 cut(s)	545, 932
Alw21I	GWGCWC	2 cut(s)	211, 619
Alw44I	GTGCAC	1 cut(s)	207
AlwI	GGATC	3 cut(s)	686, 830, 1094
AlwNI	CAGNNNCTG	1 cut(s)	743
AoxI	GGCC	2 cut(s)	1033, 1186
ApaLI	GTGCAC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	8, 737
ApoI	RAATTY	4 cut(s)	880, 888, 952, 1115
AseI	ATTAAT	1 cut(s)	591
Asp718I	GGTACC	1 cut(s)	1002
AspLEI	GCGC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	181
AxyI	CCTNAGG	1 cut(s)	1082
BaeGI	GKGCMC	1 cut(s)	211
BalI	TGGCCA	1 cut(s)	1188
BanI	GGYRCC	1 cut(s)	1002
Bbv12I	GWGCWC	2 cut(s)	211, 619
BbvI	GCAGC	1 cut(s)	749
BccI	CCATC	3 cut(s)	298, 544, 1178
BcgI	CGANNNNNNTGC	2 cut(s)	1001, 1035
BciT130I	CCWGG	1 cut(s)	501
BclI	TGATCA	1 cut(s)	288
BfaI	CTAG	2 cut(s)	63, 536
BfmI	CTRYAG	2 cut(s)	814, 1198
BfuAI	ACCTGC	1 cut(s)	738
BglI	GCCNNNNNGGC	1 cut(s)	341
BglII	AGATCT	1 cut(s)	462
BisI	GCNGC	3 cut(s)	9, 669, 738
BlsI	GCNGC	3 cut(s)	10, 670, 739
Bme1390I	CCNGG	1 cut(s)	501
BmiI	GGNNCC	2 cut(s)	284, 1004
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	5 cut(s)	238, 256, 261, 331, 573
BsaBI	GATNNNNATC	1 cut(s)	1161
BsaJI	CCNNGG	2 cut(s)	500, 1102
Bsc4I	CCNNNNNNNGG	3 cut(s)	656, 859, 912
Bse1I	ACTGG	1 cut(s)	748
Bse21I	CCTNAGG	1 cut(s)	1082
Bse3DI	GCAATG	2 cut(s)	1171, 1189
Bse8I	GATNNNNATC	1 cut(s)	1161
BseBI	CCWGG	1 cut(s)	501
BseDI	CCNNGG	2 cut(s)	500, 1102
BseGI	GGATG	1 cut(s)	555
BseJI	GATNNNNATC	1 cut(s)	1161
BseLI	CCNNNNNNNGG	3 cut(s)	656, 859, 912
BseMI	GCAATG	2 cut(s)	1171, 1189
BseNI	ACTGG	1 cut(s)	748
BseRI	GAGGAG	3 cut(s)	44, 47, 374
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	749
BseYI	CCCAGC	2 cut(s)	545, 932
BsgI	GTGCAG	1 cut(s)	828
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	2 cut(s)	1035, 1188
BshNI	GGYRCC	1 cut(s)	1002
BsiHKAI	GWGCWC	2 cut(s)	211, 619
BslI	CCNNNNNNNGG	3 cut(s)	656, 859, 912
BsmI	GAATGC	2 cut(s)	304, 841
BsnI	GGCC	2 cut(s)	1035, 1188
Bsp1286I	GDGCHC	2 cut(s)	211, 619
Bsp143I	GATC	5 cut(s)	288, 462, 691, 822, 1086
Bsp19I	CCATGG	1 cut(s)	1102
BspACI	CCGC	5 cut(s)	58, 167, 371, 437, 668
BspANI	GGCC	2 cut(s)	1035, 1188
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	284, 1004
BspMI	ACCTGC	1 cut(s)	738
BspPI	GGATC	3 cut(s)	686, 830, 1094
BspQI	GCTCTTC	1 cut(s)	624
BspT107I	GGYRCC	1 cut(s)	1002
BsrDI	GCAATG	2 cut(s)	1171, 1189
BsrI	ACTGG	1 cut(s)	748
BssECI	CCNNGG	2 cut(s)	500, 1102
BssMI	GATC	5 cut(s)	288, 462, 691, 822, 1086
BssNAI	GTATAC	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	1102
Bst1107I	GTATAC	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	1 cut(s)	818
Bst6I	CTCTTC	2 cut(s)	624, 975
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	7 cut(s)	60, 165, 458, 543, 561, 735, 811
BstDEI	CTNAG	1 cut(s)	1082
BstDSI	CCRYGG	1 cut(s)	1102
BstENI	CCTNNNNNAGG	1 cut(s)	910
BstF5I	GGATG	1 cut(s)	555
BstFNI	CGCG	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	5 cut(s)	291, 465, 694, 825, 1089
BstMBI	GATC	5 cut(s)	288, 462, 691, 822, 1086
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 257, 266, 341
BstNI	CCWGG	1 cut(s)	501
BstNSI	RCATGY	6 cut(s)	223, 335, 429, 460, 522, 563
BstSCI	CCNGG	1 cut(s)	499
BstSFI	CTRYAG	2 cut(s)	814, 1198
BstSLI	GKGCMC	1 cut(s)	211
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	749
BstX2I	RGATCY	2 cut(s)	462, 1086
BstYI	RGATCY	2 cut(s)	462, 1086
BstZ17I	GTATAC	1 cut(s)	318
Bsu36I	CCTNAGG	1 cut(s)	1082
BsuRI	GGCC	2 cut(s)	1035, 1188
BtgI	CCRYGG	1 cut(s)	1102
BtgZI	GCGATG	2 cut(s)	284, 317
BtsCI	GGATG	1 cut(s)	555
BveI	ACCTGC	1 cut(s)	738
Cac8I	GCNNGC	7 cut(s)	60, 165, 458, 543, 561, 735, 811
CaiI	CAGNNNCTG	1 cut(s)	743
CfoI	GCGC	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	937, 1003
CviQI	GTAC	2 cut(s)	937, 1003
DdeI	CTNAG	1 cut(s)	1082
DpnI	GATC	5 cut(s)	290, 464, 693, 824, 1088
DpnII	GATC	5 cut(s)	288, 462, 691, 822, 1086
DrdI	GACNNNNNNGTC	1 cut(s)	191
DseDI	GACNNNNNNGTC	1 cut(s)	191
EaeI	YGGCCR	1 cut(s)	1186
Eam1104I	CTCTTC	2 cut(s)	624, 975
EarI	CTCTTC	2 cut(s)	624, 975
Eco130I	CCWWGG	1 cut(s)	1102
Eco81I	CCTNAGG	1 cut(s)	1082
EcoNI	CCTNNNNNAGG	1 cut(s)	910
EcoRI	GAATTC	1 cut(s)	880
EcoRII	CCWGG	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	1102
EcoT22I	ATGCAT	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	1102
FalI	AAGNNNNNCTT	2 cut(s)	750, 782
FauI	CCCGC	3 cut(s)	51, 364, 430
FbaI	TGATCA	1 cut(s)	288
FblI	GTMKAC	2 cut(s)	317, 1134
Fnu4HI	GCNGC	3 cut(s)	9, 669, 738
FokI	GGATG	1 cut(s)	562
Fsp4HI	GCNGC	3 cut(s)	9, 669, 738
FspBI	CTAG	2 cut(s)	63, 536
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	3 cut(s)	9, 669, 738
GsaI	CCCAGC	2 cut(s)	549, 936
HaeIII	GGCC	2 cut(s)	1035, 1188
HhaI	GCGC	1 cut(s)	163
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	3 cut(s)	126, 470, 701
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	7 cut(s)	184, 209, 217, 318, 529, 844, 1135
Hpy188I	TCNGA	2 cut(s)	886, 994
Hpy188III	TCNNGA	3 cut(s)	123, 832, 944
Hpy8I	GTNNAC	7 cut(s)	184, 209, 217, 318, 529, 844, 1135
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	3 cut(s)	31, 166, 1059
HpyCH4III	ACNGT	1 cut(s)	818
HpyCH4IV	ACGT	1 cut(s)	939
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 257, 266, 341
HpyF3I	CTNAG	1 cut(s)	1082
HpySE526I	ACGT	1 cut(s)	939
HspAI	GCGC	1 cut(s)	161
KpnI	GGTACC	1 cut(s)	1006
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	5 cut(s)	288, 462, 691, 822, 1086
LguI	GCTCTTC	1 cut(s)	624
LmnI	GCTCC	1 cut(s)	1199
Lsp1109I	GCAGC	1 cut(s)	749
LweI	GCATC	5 cut(s)	238, 256, 261, 331, 573
MaeI	CTAG	2 cut(s)	63, 536
MaeII	ACGT	1 cut(s)	939
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	5 cut(s)	290, 464, 693, 824, 1088
MboI	GATC	5 cut(s)	288, 462, 691, 822, 1086
MboII	GAAGA	9 cut(s)	257, 611, 673, 767, 841, 986, 989, 992, 1027
MflI	RGATCY	2 cut(s)	462, 1086
MhlI	GDGCHC	2 cut(s)	211, 619
MlsI	TGGCCA	1 cut(s)	1188
MluNI	TGGCCA	1 cut(s)	1188
MlyI	GAGTC	2 cut(s)	120, 695
MmeI	TCCRAC	3 cut(s)	275, 620, 800
MnlI	CCTC	7 cut(s)	22, 25, 352, 376, 877, 909, 1046
Mox20I	TGGCCA	1 cut(s)	1188
Mph1103I	ATGCAT	1 cut(s)	520
MscI	TGGCCA	1 cut(s)	1188
MseI	TTAA	4 cut(s)	387, 591, 911, 1071
MslI	CAYNNNNRTG	4 cut(s)	407, 409, 486, 767
Msp20I	TGGCCA	1 cut(s)	1188
MspR9I	CCNGG	1 cut(s)	501
Mva1269I	GAATGC	2 cut(s)	304, 841
MvaI	CCWGG	1 cut(s)	501
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	4 cut(s)	173, 257, 266, 341
NcoI	CCATGG	1 cut(s)	1102
NdeII	GATC	5 cut(s)	288, 462, 691, 822, 1086
NlaIV	GGNNCC	2 cut(s)	284, 1004
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	400
NsiI	ATGCAT	1 cut(s)	520
NspI	RCATGY	6 cut(s)	223, 335, 429, 460, 522, 563
OliI	CACNNNNGTG	2 cut(s)	407, 767
PaeI	GCATGC	2 cut(s)	460, 563
PaqCI	CACCTGC	1 cut(s)	738
PciI	ACATGT	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	624
PctI	GAATGC	2 cut(s)	304, 841
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	3 cut(s)	10, 670, 739
PleI	GAGTC	2 cut(s)	120, 695
PpsI	GAGTC	2 cut(s)	120, 695
PscI	ACATGT	1 cut(s)	219
PshBI	ATTAAT	1 cut(s)	591
Psp6I	CCWGG	1 cut(s)	499
PspFI	CCCAGC	2 cut(s)	545, 932
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	2 cut(s)	284, 1004
PstNI	CAGNNNCTG	1 cut(s)	743
PsuI	RGATCY	2 cut(s)	462, 1086
RsaI	GTAC	2 cut(s)	938, 1004
RsaNI	GTAC	2 cut(s)	937, 1003
RseI	CAYNNNNRTG	4 cut(s)	407, 409, 486, 767
SapI	GCTCTTC	1 cut(s)	624
SaqAI	TTAA	4 cut(s)	387, 591, 911, 1071
SatI	GCNGC	3 cut(s)	9, 669, 738
Sau3AI	GATC	5 cut(s)	288, 462, 691, 822, 1086
SchI	GAGTC	2 cut(s)	120, 695
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	2 cut(s)	211, 619
SfaNI	GCATC	5 cut(s)	238, 256, 261, 331, 573
SfcI	CTRYAG	2 cut(s)	814, 1198
SmiMI	CAYNNNNRTG	4 cut(s)	407, 409, 486, 767
SphI	GCATGC	2 cut(s)	460, 563
SsiI	CCGC	5 cut(s)	58, 167, 371, 437, 668
SspMI	CTAG	2 cut(s)	63, 536
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	1 cut(s)	1102
TaaI	ACNGT	1 cut(s)	818
TaiI	ACGT	1 cut(s)	942
TauI	GCSGC	1 cut(s)	671
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	4 cut(s)	387, 591, 911, 1071
Tru9I	TTAA	4 cut(s)	387, 591, 911, 1071
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	2 cut(s)	8, 737
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	8 cut(s)	82, 146, 491, 797, 888, 893, 1108, 1160
TspGWI	ACGGA	2 cut(s)	101, 201
VneI	GTGCAC	1 cut(s)	207
VspI	ATTAAT	1 cut(s)	591
XagI	CCTNNNNNAGG	1 cut(s)	910
XapI	RAATTY	4 cut(s)	880, 888, 952, 1115
XceI	RCATGY	6 cut(s)	223, 335, 429, 460, 522, 563
XmiI	GTMKAC	2 cut(s)	317, 1134
XspI	CTAG	2 cut(s)	63, 536
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.