Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013045

Physical Location & Seq

Genomic Coordinates Reverse (-)

46646778 .. 46649250

Gene Structure 2473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019111

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2055 bp

ATGCCATCCCTCACTCCCAACTCCCTCGCCTCCCTTCTCCAATCAGCCGTCTCCACTCGTTCTTCTCTTCTGGGCCGAGCCGCCCACGCCCATATCATCAGAACCCTCCAACCCCCACACCCCTCCTTCCTCTCCAACCACCTCGTCAACATGTACTCCAAACTCGACTTCCCCAACTCCGCCCAACTCGTCCTCCGCCTCACCCCTTCTCCCTCCGTCGTCACCTGGACCGCCCTCATCGCCGGCCTTGTCCACAACCGTCATTTCGCCTCCGCTCTCCTCCACTTCGCTAACATGCGTCGCCACTCCGTCCACGCCAATGACTTCACCTTCCCCTGCGCCTTCAAGGCCTCCGGCTTGCTTCGTCTCCCGGTGGTCGGAAAACAGGTGCATGCCCTCGCCGTCAAGGCGGGGCAGATATGTGATGTCTTTGTTGGGTGCAGTGCTTTTGATATGTACTGTAAAACTGGTCTGAGAGACGATGCAGGGAAGGTGTTTGATGAAATGCCTGAGAGAAACCTTGCTACTTGGAATGCCTACATGTCGAATGCGGTGCTTGACCGGCGGCCGCTGAGTGCTGTCAACAAGTTTATTGAGTTTGTGAGGGCGGGTGGGGAGCCGAATTCGATTACCTTCTGTGCATTTCTCAATGCCTGTTCGGATACATCGGCTTTGGAACTTGGGAGGCAGTTACATGGGTTTGTGATGCGATGTGGGTTTGGGAAAGATGTGTCAGTGCTCAATGGGCTTGTGGATTTTTATGGGAAGTGTCGGGATGTTGGGTCGTCTAAGATGGTTTTCGATAGAATTGGTGAGGCTAATCATGTCTCTTGGTGCTCCATGGTGGCTGCTTATGTGCAAAATTATGAGGAGGAGAAGGCTTGTGAGTTGTTTTTGAGGGCTAGGAGAGAAGGGGTTGAGCCGACGGATTTCATGGTTTCGAGTGTTCTGAGTGCTTGTTCTGGACTAGCGTGGCTTGAACAGGGTAGGTCAGTTCATGCGCTTGCGGTGAAGGCTTGTGTGGATGGAAATGTCTTTGTTGGGAGTGCACTCGTTGACATGTATGGAAAATGTGGGAGTATAGAAGATGCCGAGTGTGCATTTGATGCGATGCCTTCAAGGAACTTGATCAGTTGGAATGCAATGGTAGGCGGGTATACGCATCAAGGACATGCCGACATGGCTCTGGCATTGTTTGAGGAGATGAGTGCGGGAAGCCATGAGGTTAAACCGAATTATGTCACATTGGTGTGTGTATTGTCAGCATGTAGTAGGGCGGGGGCTGTTCAAAAGGGCGTGCAGATCTTTGATTCAATGAAACAAAGGAATGGTGTTGAACCAGGGGCAGAGCATTATGCATGTGTTGTGGACTTGCTAGGGCGAGCTGGGATGGTAGAGCGCGCTTACGAGTTTATTACAAAGATGCCAATTAATCCAACAATTTCCATTTGGGGTGCTCTTCTTGGGGCTTGTAAAATGTATACGAAGCCAGAATTGGGGAAGATTGCGGCTGAAAAGTTATTTGAACTTGATCCTGAAGACTCTGGCAACCATGTGGTGCTTTCTAATTTGCTGGCAGCAACTGGCAGGTGGGAAGAAGCCACTCTTGTGAGAAAGGAGATGAAAGATGTTGGCATAAAAAAGGGTGCAGGCTACAGTTGGATCACAGTCAAGAATGCAGTCCACATCTTCCAAGCAAAGGACACCTCCCATGAAATGAATTCTGAAATTCAGGCAATGCTGACCTATTTAAGGAGGAAAATGCAGGAAGCTGGGTATGTTCCAGATACAAATTTTGCTCTGTTTGATTTAGAAGAAGAAGAGAAAGTATCGGAAGTTTGGTACCACAGCGAGAAGATTGCCCTTGCCTTTGGCCTCATATCTATCCCATCTGGGTTGCCTATAAGGATTAACAAAAACCTTAGGATCTGTGGAGATTGCCATGGTGCAATCAAATTCATATCAGGTATTGTAGACAGAGAAATTATTGTCAGGGATAATAATCGTTTTCATCGCTTTAGAGATGGCCATTGCTCCTGTAGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006081 GO:0006082 GO:0006084 GO:0006090 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009451 GO:0009987 GO:0016070 GO:0016125 GO:0016787 GO:0016788 GO:0019287 GO:0019288 GO:0019637 GO:0019682 GO:0019693 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0032787 GO:0033865 GO:0033875 GO:0034032 GO:0034046 GO:0034641 GO:0035383 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0048364 GO:0048731 GO:0048856 GO:0050790 GO:0051186 GO:0055086 GO:0065007 GO:0065009 GO:0070717 GO:0071704 GO:0072521 GO:0090304 GO:0090305 GO:0090407 GO:0097159 GO:0099402 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

685

Amino Acids

75.39

Weight (kDa)

7.08

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	71 - 116	5.4e-07	PPR repeat family
PPR_2	PF13041	375 - 424	5e-07	PPR repeat family
E_motif	PF20431	494 - 555	4.4e-18	E motif
DYW_deaminase	PF14432	592 - 684	6e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14850
fragaria_vesca	FvH4_6g27530
malus_domestica	MD13G1194200.v1.1
prunus_persica	Prupe.1G015100_v2.0.a1
pyrus_communis	pycom13g16650
rosa_chinensis	RchiOBHm_Chr2g0129921
rosa_laevigata	RLG00000019107 RLG00000019111
rosa_multiflora	Rmu_co8468659.1_g000001 Rmu_sc0009663.1_g000015
rosa_roxburghii	Rroxscaffold_2G00114230
rosa_rugosa	Rorug02G0290300 Rorug02G0290300 Rorug02G0290300
rosa_samantha	Rh2AG341700 Rh2BG349700 Rh2CG328900
rosa_wichuraiana	Rw2G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1578
Acc36I	ACCTGC	1 cut(s)	1578
Acc65I	GGTACC	1 cut(s)	1842
AccB1I	GGYRCC	1 cut(s)	1842
AccBSI	CCGCTC	1 cut(s)	275
AccI	GTMKAC	3 cut(s)	1157, 1481, 1974
AccII	CGCG	1 cut(s)	1401
AclWI	GGATC	3 cut(s)	1526, 1670, 1934
AcoI	YGGCCR	2 cut(s)	566, 2026
AcsI	RAATTY	5 cut(s)	622, 1720, 1728, 1792, 1955
AcuI	CTGAAG	1 cut(s)	1557
AfaI	GTAC	3 cut(s)	155, 458, 1844
AfiI	CCNNNNNNNGG	4 cut(s)	377, 1496, 1699, 1752
AflIII	ACRYGT	3 cut(s)	150, 540, 1059
AgsI	TTSAA	7 cut(s)	346, 980, 1119, 1289, 1314, 1337, 1526
AjnI	CCWGG	2 cut(s)	224, 1339
AjuI	GAANNNNNNNTTGG	4 cut(s)	152, 184, 1478, 1510
AleI	CACNNNNGTG	2 cut(s)	1247, 1607
AluBI	AGCT	2 cut(s)	1385, 1772
AluI	AGCT	2 cut(s)	1385, 1772
Alw21I	GWGCWC	4 cut(s)	741, 839, 1051, 1459
Alw26I	GTCTC	4 cut(s)	55, 371, 471, 832
Alw44I	GTGCAC	1 cut(s)	1047
AlwI	GGATC	3 cut(s)	1526, 1670, 1934
AlwNI	CAGNNNCTG	1 cut(s)	1583
AoxI	GGCC	6 cut(s)	73, 244, 348, 566, 1873, 2026
ApaLI	GTGCAC	1 cut(s)	1047
ApeKI	GCWGC	2 cut(s)	848, 1577
ApoI	RAATTY	5 cut(s)	622, 1720, 1728, 1792, 1955
AseI	ATTAAT	1 cut(s)	1431
Asp718I	GGTACC	1 cut(s)	1842
AspLEI	GCGC	4 cut(s)	341, 1003, 1401, 1403
AspS9I	GGNCC	2 cut(s)	73, 228
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	5 cut(s)	193, 214, 319, 824, 1021
AvaII	GGWCC	1 cut(s)	228
AxyI	CCTNAGG	1 cut(s)	1922
BaeGI	GKGCMC	1 cut(s)	1051
BalI	TGGCCA	1 cut(s)	2028
BanI	GGYRCC	1 cut(s)	1842
BbsI	GAAGAC	1 cut(s)	1545
Bbv12I	GWGCWC	4 cut(s)	741, 839, 1051, 1459
BbvI	GCAGC	2 cut(s)	835, 1589
BccI	CCATC	6 cut(s)	13, 787, 1019, 1384, 1897, 2018
BceAI	ACGGC	2 cut(s)	32, 386
BcgI	CGANNNNNNTGC	4 cut(s)	535, 569, 1841, 1875
BciT130I	CCWGG	2 cut(s)	226, 1341
BciVI	GTATCC	1 cut(s)	655
BclI	TGATCA	1 cut(s)	1128
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	4 cut(s)	55, 371, 471, 832
BfaI	CTAG	3 cut(s)	903, 968, 1376
BfmI	CTRYAG	2 cut(s)	1654, 2038
BfuAI	ACCTGC	1 cut(s)	1578
BfuI	GTATCC	1 cut(s)	655
BglI	GCCNNNNNGGC	3 cut(s)	347, 407, 1181
BglII	AGATCT	1 cut(s)	1302
BisI	GCNGC	6 cut(s)	81, 566, 569, 849, 1509, 1578
BlsI	GCNGC	6 cut(s)	82, 567, 570, 850, 1510, 1579
Bme1390I	CCNGG	3 cut(s)	226, 371, 1341
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	2 cut(s)	73, 228
BmiI	GGNNCC	2 cut(s)	618, 1844
BmrFI	CCNGG	3 cut(s)	226, 371, 1341
BmsI	GCATC	7 cut(s)	472, 696, 1078, 1096, 1101, 1171, 1413
BpiI	GAAGAC	1 cut(s)	1545
BpuMI	CCSGG	1 cut(s)	371
BsaBI	GATNNNNATC	1 cut(s)	2001
BsaJI	CCNNGG	3 cut(s)	840, 1340, 1942
BsaXI	ACNNNNNCTCC	6 cut(s)	140, 170, 177, 193, 207, 223
Bsc4I	CCNNNNNNNGG	4 cut(s)	377, 1496, 1699, 1752
Bse118I	RCCGGY	2 cut(s)	242, 561
Bse1I	ACTGG	2 cut(s)	472, 1588
Bse21I	CCTNAGG	1 cut(s)	1922
Bse3DI	GCAATG	3 cut(s)	1149, 1743, 2029
Bse8I	GATNNNNATC	1 cut(s)	2001
BseBI	CCWGG	2 cut(s)	226, 1341
BseDI	CCNNGG	3 cut(s)	840, 1340, 1942
BseGI	GGATG	4 cut(s)	5, 781, 1030, 1395
BseJI	GATNNNNATC	1 cut(s)	2001
BseLI	CCNNNNNNNGG	4 cut(s)	377, 1496, 1699, 1752
BseMI	GCAATG	3 cut(s)	1149, 1743, 2029
BseMII	CTCAG	4 cut(s)	464, 501, 563, 941
BseNI	ACTGG	2 cut(s)	472, 1588
BsePI	GCGCGC	1 cut(s)	1399
BseRI	GAGGAG	4 cut(s)	269, 884, 887, 1214
BseSI	GKGCMC	1 cut(s)	1051
BseX3I	CGGCCG	1 cut(s)	566
BseXI	GCAGC	2 cut(s)	835, 1589
BseYI	CCCAGC	2 cut(s)	1385, 1772
BsgI	GTGCAG	3 cut(s)	460, 1319, 1668
Bsh1236I	CGCG	1 cut(s)	1401
Bsh1285I	CGRYCG	1 cut(s)	569
BshFI	GGCC	6 cut(s)	75, 246, 350, 568, 1875, 2028
BshNI	GGYRCC	1 cut(s)	1842
BsiEI	CGRYCG	1 cut(s)	569
BsiHKAI	GWGCWC	4 cut(s)	741, 839, 1051, 1459
BsiSI	CCGG	4 cut(s)	243, 354, 371, 562
BslI	CCNNNNNNNGG	4 cut(s)	377, 1496, 1699, 1752
BsmAI	GTCTC	4 cut(s)	55, 371, 471, 832
BsmBI	CGTCTC	3 cut(s)	55, 371, 471
BsmI	GAATGC	4 cut(s)	538, 553, 1144, 1681
BsnI	GGCC	6 cut(s)	75, 246, 350, 568, 1875, 2028
Bsp1286I	GDGCHC	4 cut(s)	741, 839, 1051, 1459
Bsp143I	GATC	5 cut(s)	1128, 1302, 1531, 1662, 1926
Bsp19I	CCATGG	2 cut(s)	840, 1942
BspANI	GGCC	6 cut(s)	75, 246, 350, 568, 1875, 2028
BspCNI	CTCAG	4 cut(s)	465, 502, 564, 942
BspFNI	CGCG	1 cut(s)	1401
BspLI	GGNNCC	2 cut(s)	618, 1844
BspMI	ACCTGC	1 cut(s)	1578
BspPI	GGATC	3 cut(s)	1526, 1670, 1934
BspQI	GCTCTTC	1 cut(s)	1464
BspT107I	GGYRCC	1 cut(s)	1842
BsrBI	CCGCTC	1 cut(s)	275
BsrDI	GCAATG	3 cut(s)	1149, 1743, 2029
BsrFI	RCCGGY	2 cut(s)	242, 561
BsrI	ACTGG	2 cut(s)	472, 1588
BssAI	RCCGGY	2 cut(s)	242, 561
BssECI	CCNNGG	3 cut(s)	840, 1340, 1942
BssHII	GCGCGC	1 cut(s)	1399
BssMI	GATC	5 cut(s)	1128, 1302, 1531, 1662, 1926
BssNAI	GTATAC	2 cut(s)	1158, 1482
BssT1I	CCWWGG	2 cut(s)	840, 1942
Bst1107I	GTATAC	2 cut(s)	1158, 1482
Bst2UI	CCWGG	2 cut(s)	226, 1341
Bst4CI	ACNGT	4 cut(s)	260, 461, 1658, 1669
Bst6I	CTCTTC	3 cut(s)	72, 1464, 1815
BstAPI	GCANNNNNTGC	1 cut(s)	1106
BstC8I	GCNNGC	9 cut(s)	244, 359, 393, 1005, 1298, 1383, 1401, 1575, 1651
BstDEI	CTNAG	6 cut(s)	473, 510, 572, 789, 950, 1922
BstDSI	CCRYGG	2 cut(s)	840, 1942
BstENI	CCTNNNNNAGG	1 cut(s)	1750
BstF5I	GGATG	4 cut(s)	5, 781, 1030, 1395
BstFNI	CGCG	1 cut(s)	1401
BstHHI	GCGC	4 cut(s)	341, 1003, 1401, 1403
BstKTI	GATC	5 cut(s)	1131, 1305, 1534, 1665, 1929
BstMAI	GTCTC	4 cut(s)	55, 371, 471, 832
BstMBI	GATC	5 cut(s)	1128, 1302, 1531, 1662, 1926
BstMCI	CGRYCG	1 cut(s)	569
BstNI	CCWGG	2 cut(s)	226, 1341
BstNSI	RCATGY	8 cut(s)	154, 298, 395, 544, 1063, 1175, 1269, 1362
BstSCI	CCNGG	3 cut(s)	224, 369, 1339
BstSFI	CTRYAG	2 cut(s)	1654, 2038
BstSLI	GKGCMC	1 cut(s)	1051
BstUI	CGCG	1 cut(s)	1401
BstV1I	GCAGC	2 cut(s)	835, 1589
BstV2I	GAAGAC	1 cut(s)	1545
BstX2I	RGATCY	2 cut(s)	1302, 1926
BstYI	RGATCY	2 cut(s)	1302, 1926
BstZ17I	GTATAC	2 cut(s)	1158, 1482
BstZI	CGGCCG	1 cut(s)	566
Bsu36I	CCTNAGG	1 cut(s)	1922
BsuI	GTATCC	1 cut(s)	655
BsuRI	GGCC	6 cut(s)	75, 246, 350, 568, 1875, 2028
BtgI	CCRYGG	2 cut(s)	840, 1942
BtgZI	GCGATG	4 cut(s)	223, 724, 1124, 1997
BtsCI	GGATG	4 cut(s)	5, 781, 1030, 1395
BtsI	GCAGTG	1 cut(s)	448
BtsIMutI	CAGTG	2 cut(s)	448, 741
BveI	ACCTGC	1 cut(s)	1578
Cac8I	GCNNGC	9 cut(s)	244, 359, 393, 1005, 1298, 1383, 1401, 1575, 1651
CaiI	CAGNNNCTG	1 cut(s)	1583
CciNI	GCGGCCGC	1 cut(s)	566
CfoI	GCGC	4 cut(s)	341, 1003, 1401, 1403
Cfr10I	RCCGGY	2 cut(s)	242, 561
Cfr13I	GGNCC	2 cut(s)	73, 228
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	3 cut(s)	154, 457, 1843
CviQI	GTAC	3 cut(s)	154, 457, 1843
DdeI	CTNAG	6 cut(s)	473, 510, 572, 789, 950, 1922
DpnI	GATC	5 cut(s)	1130, 1304, 1533, 1664, 1928
DpnII	GATC	5 cut(s)	1128, 1302, 1531, 1662, 1926
EaeI	YGGCCR	2 cut(s)	566, 2026
EagI	CGGCCG	1 cut(s)	566
Eam1104I	CTCTTC	3 cut(s)	72, 1464, 1815
EarI	CTCTTC	3 cut(s)	72, 1464, 1815
EciI	GGCGGA	2 cut(s)	169, 185
EclXI	CGGCCG	1 cut(s)	566
Eco130I	CCWWGG	2 cut(s)	840, 1942
Eco147I	AGGCCT	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	228
Eco52I	CGGCCG	1 cut(s)	566
Eco57I	CTGAAG	1 cut(s)	1557
Eco81I	CCTNAGG	1 cut(s)	1922
EcoNI	CCTNNNNNAGG	1 cut(s)	1750
EcoRI	GAATTC	2 cut(s)	622, 1720
EcoRII	CCWGG	2 cut(s)	224, 1339
EcoT14I	CCWWGG	2 cut(s)	840, 1942
EcoT22I	ATGCAT	1 cut(s)	1360
ErhI	CCWWGG	2 cut(s)	840, 1942
Esp3I	CGTCTC	3 cut(s)	55, 371, 471
FalI	AAGNNNNNCTT	2 cut(s)	1590, 1622
FauI	CCCGC	5 cut(s)	403, 601, 1145, 1204, 1270
FbaI	TGATCA	1 cut(s)	1128
FblI	GTMKAC	3 cut(s)	1157, 1481, 1974
Fnu4HI	GCNGC	6 cut(s)	81, 566, 569, 849, 1509, 1578
FokI	GGATG	3 cut(s)	788, 1037, 1402
Fsp4HI	GCNGC	6 cut(s)	81, 566, 569, 849, 1509, 1578
FspBI	CTAG	3 cut(s)	903, 968, 1376
GlaI	GCGC	4 cut(s)	340, 1002, 1400, 1402
GluI	GCNGC	6 cut(s)	81, 566, 569, 849, 1509, 1578
GsaI	CCCAGC	2 cut(s)	1389, 1776
HaeIII	GGCC	6 cut(s)	75, 246, 350, 568, 1875, 2028
HapII	CCGG	4 cut(s)	243, 354, 371, 562
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	4 cut(s)	341, 1003, 1401, 1403
Hin6I	GCGC	4 cut(s)	339, 1001, 1399, 1401
HinP1I	GCGC	4 cut(s)	339, 1001, 1399, 1401
HincII	GTYRAC	3 cut(s)	148, 583, 1057
HindII	GTYRAC	3 cut(s)	148, 583, 1057
HinfI	GANTC	2 cut(s)	1310, 1541
HpaII	CCGG	4 cut(s)	243, 354, 371, 562
HphI	GGTGA	5 cut(s)	193, 214, 319, 824, 1021
Hpy188I	TCNGA	7 cut(s)	101, 380, 474, 661, 951, 1726, 1834
Hpy188III	TCNNGA	5 cut(s)	773, 963, 1535, 1672, 1784
Hpy99I	CGWCG	3 cut(s)	221, 303, 928
HpyCH4III	ACNGT	4 cut(s)	260, 461, 1658, 1669
HpyF3I	CTNAG	6 cut(s)	473, 510, 572, 789, 950, 1922
HspAI	GCGC	4 cut(s)	339, 1001, 1399, 1401
KpnI	GGTACC	1 cut(s)	1846
KroI	GCCGGC	1 cut(s)	242
KroNI	GCCGGC	1 cut(s)	244
Ksp22I	TGATCA	1 cut(s)	1128
Kzo9I	GATC	5 cut(s)	1128, 1302, 1531, 1662, 1926
LguI	GCTCTTC	1 cut(s)	1464
LmnI	GCTCC	3 cut(s)	616, 842, 2039
Lsp1109I	GCAGC	2 cut(s)	835, 1589
LweI	GCATC	7 cut(s)	472, 696, 1078, 1096, 1101, 1171, 1413
MaeI	CTAG	3 cut(s)	903, 968, 1376
MaeIII	GTNAC	3 cut(s)	220, 690, 1240
MalI	GATC	5 cut(s)	1130, 1304, 1533, 1664, 1928
MbiI	CCGCTC	1 cut(s)	275
MboI	GATC	5 cut(s)	1128, 1302, 1531, 1662, 1926
MflI	RGATCY	2 cut(s)	1302, 1926
MhlI	GDGCHC	4 cut(s)	741, 839, 1051, 1459
MlsI	TGGCCA	1 cut(s)	2028
MluNI	TGGCCA	1 cut(s)	2028
MlyI	GAGTC	1 cut(s)	1535
MmeI	TCCRAC	6 cut(s)	133, 159, 358, 1115, 1460, 1640
Mox20I	TGGCCA	1 cut(s)	2028
Mph1103I	ATGCAT	1 cut(s)	1360
MroNI	GCCGGC	1 cut(s)	242
MscI	TGGCCA	1 cut(s)	2028
MseI	TTAA	4 cut(s)	1227, 1431, 1751, 1911
MslI	CAYNNNNRTG	4 cut(s)	318, 1247, 1249, 1607
Msp20I	TGGCCA	1 cut(s)	2028
MspA1I	CMGCKG	1 cut(s)	571
MspI	CCGG	4 cut(s)	243, 354, 371, 562
MspR9I	CCNGG	3 cut(s)	226, 371, 1341
Mva1269I	GAATGC	4 cut(s)	538, 553, 1144, 1681
MvaI	CCWGG	2 cut(s)	226, 1341
MvnI	CGCG	1 cut(s)	1401
NaeI	GCCGGC	1 cut(s)	244
NciI	CCSGG	1 cut(s)	371
NcoI	CCATGG	2 cut(s)	840, 1942
NdeII	GATC	5 cut(s)	1128, 1302, 1531, 1662, 1926
NgoMIV	GCCGGC	1 cut(s)	242
NlaIV	GGNNCC	2 cut(s)	618, 1844
NmeAIII	GCCGAG	2 cut(s)	101, 1117
NmuCI	GTSAC	2 cut(s)	220, 1240
NotI	GCGGCCGC	1 cut(s)	566
NsiI	ATGCAT	1 cut(s)	1360
NspI	RCATGY	8 cut(s)	154, 298, 395, 544, 1063, 1175, 1269, 1362
OliI	CACNNNNGTG	2 cut(s)	1247, 1607
PaeI	GCATGC	1 cut(s)	395
PaqCI	CACCTGC	1 cut(s)	1578
PauI	GCGCGC	1 cut(s)	1399
PceI	AGGCCT	1 cut(s)	350
PciI	ACATGT	3 cut(s)	150, 540, 1059
PciSI	GCTCTTC	1 cut(s)	1464
PctI	GAATGC	4 cut(s)	538, 553, 1144, 1681
PdiI	GCCGGC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	1310
PkrI	GCNGC	6 cut(s)	82, 567, 570, 850, 1510, 1579
PleI	GAGTC	1 cut(s)	1535
PpsI	GAGTC	1 cut(s)	1535
PscI	ACATGT	3 cut(s)	150, 540, 1059
PshBI	ATTAAT	1 cut(s)	1431
Psp6I	CCWGG	2 cut(s)	224, 1339
PspFI	CCCAGC	2 cut(s)	1385, 1772
PspGI	CCWGG	2 cut(s)	224, 1339
PspN4I	GGNNCC	2 cut(s)	618, 1844
PspPI	GGNCC	2 cut(s)	73, 228
PstNI	CAGNNNCTG	1 cut(s)	1583
PsuI	RGATCY	2 cut(s)	1302, 1926
PteI	GCGCGC	1 cut(s)	1399
RsaI	GTAC	3 cut(s)	155, 458, 1844
RsaNI	GTAC	3 cut(s)	154, 457, 1843
RseI	CAYNNNNRTG	4 cut(s)	318, 1247, 1249, 1607
SapI	GCTCTTC	1 cut(s)	1464
SaqAI	TTAA	4 cut(s)	1227, 1431, 1751, 1911
SatI	GCNGC	6 cut(s)	81, 566, 569, 849, 1509, 1578
Sau3AI	GATC	5 cut(s)	1128, 1302, 1531, 1662, 1926
Sau96I	GGNCC	2 cut(s)	73, 228
SchI	GAGTC	1 cut(s)	1535
ScrFI	CCNGG	3 cut(s)	226, 371, 1341
SduI	GDGCHC	4 cut(s)	741, 839, 1051, 1459
SfaNI	GCATC	7 cut(s)	472, 696, 1078, 1096, 1101, 1171, 1413
SfcI	CTRYAG	2 cut(s)	1654, 2038
SinI	GGWCC	1 cut(s)	228
SmiMI	CAYNNNNRTG	4 cut(s)	318, 1247, 1249, 1607
SphI	GCATGC	1 cut(s)	395
SseBI	AGGCCT	1 cut(s)	350
SspMI	CTAG	3 cut(s)	903, 968, 1376
StuI	AGGCCT	1 cut(s)	350
StyD4I	CCNGG	3 cut(s)	224, 369, 1339
StyI	CCWWGG	2 cut(s)	840, 1942
TaaI	ACNGT	4 cut(s)	260, 461, 1658, 1669
TaqI	TCGA	5 cut(s)	165, 545, 626, 801, 941
TatI	WGTACW	2 cut(s)	153, 456
TauI	GCSGC	4 cut(s)	83, 568, 571, 1511
TfiI	GAWTC	1 cut(s)	1310
Tru1I	TTAA	4 cut(s)	1227, 1431, 1751, 1911
Tru9I	TTAA	4 cut(s)	1227, 1431, 1751, 1911
TscAI	CASTG	2 cut(s)	448, 741
TseFI	GTSAC	2 cut(s)	220, 1240
TseI	GCWGC	2 cut(s)	848, 1577
Tsp45I	GTSAC	2 cut(s)	220, 1240
TspDTI	ATGAA	9 cut(s)	516, 922, 986, 1331, 1637, 1728, 1733, 1948, 2000
TspGWI	ACGGA	3 cut(s)	205, 298, 941
TspRI	CASTG	2 cut(s)	448, 741
VneI	GTGCAC	1 cut(s)	1047
VpaK11BI	GGWCC	1 cut(s)	228
VspI	ATTAAT	1 cut(s)	1431
XagI	CCTNNNNNAGG	1 cut(s)	1750
XapI	RAATTY	5 cut(s)	622, 1720, 1728, 1792, 1955
XceI	RCATGY	8 cut(s)	154, 298, 395, 544, 1063, 1175, 1269, 1362
XmiI	GTMKAC	3 cut(s)	1157, 1481, 1974
XspI	CTAG	3 cut(s)	903, 968, 1376
Zsp2I	ATGCAT	1 cut(s)	1360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.