Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0013045

Physical Location & Seq

Genomic Coordinates Reverse (-)

42894628 .. 42899200

Gene Structure 4573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG328900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2061 bp

ATGCCATCCCTCACTCCCAACTCCCTCGCCTCCCTTCTCCAATCCGCCGTCTCCACTCGCTCTTCTCTTCTGGGCCGAGCCGCCCACGCCCATATCATCAGAACCCTCCAACCCCCACACCCCTCCTTCCTCTCCAACCACCTCGTCAACATGTACTCCAAACTCGACCTCCCCAACTCCGCCCAACTCGTCCTCCACCTCACCCCCTCTCCCACCCGCTCCGTCGTCACCTGGACCGCCCTCATCGCCGGCCTTGTCCACAACCGTCATTTCGCCTCCGCTCTCCTCCACTTCGCTAACATGTGCCGCGACTCCGTCCGCCCCAACGACTTCACCTTCCCCTGCGCCTTCAAGGCCTCCGGCTTGCTTCGTCTCCCGGTGGTCGGAAAACAGGTGCATGCCCTCGCCGTCAAGGCCGGGCAGATATGTGATGTCTTTGTTGGGTGCAGTGCTTTTGATATGTACTGCAAAACTGGGCTGAGAGACGATGCAGGGAAAGTGTTTGATGAAATGCCTGAGAGAAACCTTGCTACTTGGAATGCCTACATGTCGAATGCAGTGCTTGACCGCCGGCCGGTGAGTGCTGTAAACAAGTTTATTGAGTTTGTGAGGGCGGGTGGGGAGCCGAATTCGATTACCTTCTGTGCTTTTCTCAATGCCTGTTCGGATACGTCGTCTTTGGAACTTGGGAGGCAGTTACATGGGTTTGTGGTGCGATGTGGGTATGGGAAAGATGTGTCAGTGCTCAATGGGCTTGTGGATTTTTATGGCAAGTGTCGGGATGTTGGGTCGTCTAAGATGGTTTTCGATAGAATTGGTGAGGCTAATCATGTCTCTTGGTGCTCCATGGTGGCTGCTTATGTGCAAAACTATGAGGAGGAGAAGGCTTGTGAGTTGTTTTTGCGGGCTAGGAGAGAAGGGGTTGAGCCGACAGATTTCATGGTTTCGAGTGTTTTGAGTGCTTGTTCTGGACTCGCGTGGCTTGAACAGGGTAGGTCAGTTCATGCGCTTGCGGTGAAGGCTTGTGTGGACGGAAATGTTTTTGTTGGGAGTGCACTCGTTGACATGTATGGAAAATGTGGGAGTATAGAAGATGCCGAGTGTGCATTTGATGCGATGCCTTCAAGGAACCTGATCAGTTGGAATGCGATGGTGGGTGGGTATACGCATCAAGGACATGCCGACATGGCTCTGGCATTGTTTGAGGAGATGAGTGCGGGAAGCCATGAGGTTAAACCGAATTATGTCACATTGGTGTGTGTATTGTCAGCATGTAGTAGGGCGGGGGCTGTTCCAAAGGGCATGCAGATCTTTGATTCAATGAAACAAAGGTATGGTGTTGAACCAGGGGCAGAGCATTATGCATGTGTTGTGGACTTGCTAGGGCGAGCTGGGATGGTAGAGCGCGCTTACAAGTTTATTACAAAGATGCCAATTAATCCAACAATTTCCATTTGGGGTGCTCTTCTTGGGGCTTGTAAAATGTATAGGAAGCCAGAATTGGGGAAGATTGCTGCTCACAAGTTATTTGAACTTGATCCTAAAGACTCTGGCAACCATGTGGTGCTTTCTAATTTGCTTGCAGCAACTGGCAGGTGGGAAGAAGCCACTCTTGTGAGAAAGGAGATGAAAGATGTTGGCATAAAAAAGGGTGCAGGCTACAGTTGGATCGCAGTCAAGAATGCAGTCCACATCTTCCAAGCAAAGGACACCTCCCATGAAATGAATTCTGAAATTCAGGCAATGCTGACCTATTTAAGGAGGAAAATGCAGGAAGCTGGGTACGTTCCAGATACAAATTTTGCTCTGTTTGATTTAGAAGAAGAAGAGAAAGTATCGGAAGTTTGGTACCACAGCGAGAAGATTGCCCTTGCCTTTGGCCTCATATCTATCCCTTCTGGGTTGCCTATAAGGATTAACAAAAACCTTAGGATCTGTGGAGATTGCCATGGTGCAATCAAATTCATATCAGGTATTGTAGACAGAGAAATTATTGTCAGGGATAACAATCGTTTTCATTGCTTTAGAGATGGCCATTGCTCCTGTAGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006081 GO:0006082 GO:0006084 GO:0006090 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009451 GO:0009987 GO:0016070 GO:0016125 GO:0016787 GO:0016788 GO:0019287 GO:0019288 GO:0019637 GO:0019682 GO:0019693 GO:0019752 GO:0022622 GO:0032501 GO:0032502 GO:0032787 GO:0033865 GO:0033875 GO:0034032 GO:0034046 GO:0034641 GO:0035383 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0048364 GO:0048731 GO:0048856 GO:0050790 GO:0051186 GO:0055086 GO:0065007 GO:0065009 GO:0070717 GO:0071704 GO:0072521 GO:0090304 GO:0090305 GO:0090407 GO:0097159 GO:0099402 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

686

Amino Acids

75.58

Weight (kDa)

7.94

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	74 - 118	2.1e-07	PPR repeat family
PPR_2	PF13041	377 - 425	9.8e-07	PPR repeat family
E_motif	PF20431	497 - 557	6.4e-18	E motif
DYW_deaminase	PF14432	594 - 686	1.1e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14850
fragaria_vesca	FvH4_6g27530
malus_domestica	MD13G1194200.v1.1
prunus_persica	Prupe.1G015100_v2.0.a1
pyrus_communis	pycom13g16650
rosa_chinensis	RchiOBHm_Chr2g0129921
rosa_laevigata	RLG00000019107 RLG00000019111
rosa_multiflora	Rmu_co8468659.1_g000001 Rmu_sc0009663.1_g000015
rosa_roxburghii	Rroxscaffold_2G00114230
rosa_rugosa	Rorug02G0290300 Rorug02G0290300 Rorug02G0290300
rosa_samantha	Rh2AG341700 Rh2BG349700 Rh2CG328900
rosa_wichuraiana	Rw2G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1584
Acc36I	ACCTGC	1 cut(s)	1584
Acc65I	GGTACC	1 cut(s)	1848
AccB1I	GGYRCC	1 cut(s)	1848
AccBSI	CCGCTC	2 cut(s)	219, 281
AccI	GTMKAC	2 cut(s)	1163, 1980
AccII	CGCG	3 cut(s)	309, 977, 1407
AclWI	GGATC	3 cut(s)	1532, 1676, 1940
AcoI	YGGCCR	2 cut(s)	572, 2032
AcsI	RAATTY	5 cut(s)	628, 1726, 1734, 1798, 1961
AfaI	GTAC	4 cut(s)	155, 464, 1784, 1850
AfiI	CCNNNNNNNGG	5 cut(s)	383, 574, 1502, 1705, 1758
AflIII	ACRYGT	4 cut(s)	150, 300, 546, 1065
AgsI	TTSAA	6 cut(s)	352, 986, 1125, 1320, 1343, 1532
AjnI	CCWGG	2 cut(s)	230, 1345
AjuI	GAANNNNNNNTTGG	2 cut(s)	1484, 1516
AleI	CACNNNNGTG	2 cut(s)	1253, 1613
AluBI	AGCT	2 cut(s)	1391, 1778
AluI	AGCT	2 cut(s)	1391, 1778
Alw21I	GWGCWC	4 cut(s)	747, 845, 1057, 1465
Alw26I	GTCTC	4 cut(s)	55, 377, 477, 838
Alw44I	GTGCAC	1 cut(s)	1053
AlwI	GGATC	3 cut(s)	1532, 1676, 1940
AlwNI	CAGNNNCTG	1 cut(s)	1589
AoxI	GGCC	7 cut(s)	73, 250, 354, 414, 572, 1879, 2032
ApaLI	GTGCAC	1 cut(s)	1053
ApeKI	GCWGC	3 cut(s)	854, 1514, 1583
ApoI	RAATTY	5 cut(s)	628, 1726, 1734, 1798, 1961
AseI	ATTAAT	1 cut(s)	1437
Asp718I	GGTACC	1 cut(s)	1848
AspLEI	GCGC	4 cut(s)	347, 1009, 1407, 1409
AspS9I	GGNCC	2 cut(s)	73, 234
AsuC2I	CCSGG	2 cut(s)	377, 418
AsuHPI	GGTGA	6 cut(s)	193, 220, 325, 589, 830, 1027
AvaII	GGWCC	1 cut(s)	234
AxyI	CCTNAGG	1 cut(s)	1928
BaeGI	GKGCMC	1 cut(s)	1057
BalI	TGGCCA	1 cut(s)	2034
BanI	GGYRCC	1 cut(s)	1848
Bbv12I	GWGCWC	4 cut(s)	747, 845, 1057, 1465
BbvI	GCAGC	3 cut(s)	841, 1501, 1595
BccI	CCATC	5 cut(s)	13, 793, 1144, 1390, 2024
BceAI	ACGGC	2 cut(s)	32, 392
BcgI	CGANNNNNNTGC	4 cut(s)	541, 575, 1847, 1881
BciT130I	CCWGG	2 cut(s)	232, 1347
BciVI	GTATCC	1 cut(s)	661
BclI	TGATCA	1 cut(s)	1134
BcnI	CCSGG	2 cut(s)	377, 418
BcoDI	GTCTC	4 cut(s)	55, 377, 477, 838
BfaI	CTAG	2 cut(s)	909, 1382
BfmI	CTRYAG	2 cut(s)	1660, 2044
BfuAI	ACCTGC	1 cut(s)	1584
BfuI	GTATCC	1 cut(s)	661
BglI	GCCNNNNNGGC	3 cut(s)	353, 413, 1187
BglII	AGATCT	1 cut(s)	1308
BisI	GCNGC	5 cut(s)	81, 307, 855, 1515, 1584
BlsI	GCNGC	5 cut(s)	82, 308, 856, 1516, 1585
Bme1390I	CCNGG	4 cut(s)	232, 377, 418, 1347
Bme18I	GGWCC	1 cut(s)	234
BmgT120I	GGNCC	2 cut(s)	73, 234
BmiI	GGNNCC	3 cut(s)	624, 1130, 1850
BmrFI	CCNGG	4 cut(s)	232, 377, 418, 1347
BmrI	ACTGGG	1 cut(s)	483
BmsI	GCATC	6 cut(s)	478, 1084, 1102, 1107, 1177, 1419
BmuI	ACTGGG	1 cut(s)	483
BpuMI	CCSGG	2 cut(s)	377, 418
BsaBI	GATNNNNATC	1 cut(s)	2007
BsaJI	CCNNGG	3 cut(s)	846, 1346, 1948
BsaXI	ACNNNNNCTCC	8 cut(s)	140, 153, 170, 177, 183, 193, 207, 223
Bsc4I	CCNNNNNNNGG	5 cut(s)	383, 574, 1502, 1705, 1758
Bse118I	RCCGGY	3 cut(s)	248, 570, 574
Bse1I	ACTGG	2 cut(s)	478, 1594
Bse21I	CCTNAGG	1 cut(s)	1928
Bse3DI	GCAATG	3 cut(s)	1749, 2017, 2035
Bse8I	GATNNNNATC	1 cut(s)	2007
BseBI	CCWGG	2 cut(s)	232, 1347
BseDI	CCNNGG	3 cut(s)	846, 1346, 1948
BseGI	GGATG	3 cut(s)	5, 787, 1401
BseJI	GATNNNNATC	1 cut(s)	2007
BseLI	CCNNNNNNNGG	5 cut(s)	383, 574, 1502, 1705, 1758
BseMI	GCAATG	3 cut(s)	1749, 2017, 2035
BseMII	CTCAG	2 cut(s)	470, 507
BseNI	ACTGG	2 cut(s)	478, 1594
BsePI	GCGCGC	1 cut(s)	1405
BseRI	GAGGAG	4 cut(s)	275, 890, 893, 1220
BseSI	GKGCMC	1 cut(s)	1057
BseX3I	CGGCCG	1 cut(s)	572
BseXI	GCAGC	3 cut(s)	841, 1501, 1595
BseYI	CCCAGC	2 cut(s)	1391, 1778
BsgI	GTGCAG	2 cut(s)	466, 1674
Bsh1236I	CGCG	3 cut(s)	309, 977, 1407
Bsh1285I	CGRYCG	1 cut(s)	575
BshFI	GGCC	7 cut(s)	75, 252, 356, 416, 574, 1881, 2034
BshNI	GGYRCC	1 cut(s)	1848
BsiEI	CGRYCG	1 cut(s)	575
BsiHKAI	GWGCWC	4 cut(s)	747, 845, 1057, 1465
BsiSI	CCGG	6 cut(s)	249, 360, 377, 417, 571, 575
BslI	CCNNNNNNNGG	5 cut(s)	383, 574, 1502, 1705, 1758
BsmAI	GTCTC	4 cut(s)	55, 377, 477, 838
BsmBI	CGTCTC	3 cut(s)	55, 377, 477
BsmI	GAATGC	4 cut(s)	544, 559, 1150, 1687
BsnI	GGCC	7 cut(s)	75, 252, 356, 416, 574, 1881, 2034
Bsp1286I	GDGCHC	4 cut(s)	747, 845, 1057, 1465
Bsp143I	GATC	5 cut(s)	1134, 1308, 1537, 1668, 1932
Bsp19I	CCATGG	2 cut(s)	846, 1948
BspANI	GGCC	7 cut(s)	75, 252, 356, 416, 574, 1881, 2034
BspCNI	CTCAG	2 cut(s)	471, 508
BspFNI	CGCG	3 cut(s)	309, 977, 1407
BspLI	GGNNCC	3 cut(s)	624, 1130, 1850
BspMI	ACCTGC	1 cut(s)	1584
BspPI	GGATC	3 cut(s)	1532, 1676, 1940
BspQI	GCTCTTC	2 cut(s)	67, 1470
BspT107I	GGYRCC	1 cut(s)	1848
BsrBI	CCGCTC	2 cut(s)	219, 281
BsrDI	GCAATG	3 cut(s)	1749, 2017, 2035
BsrFI	RCCGGY	3 cut(s)	248, 570, 574
BsrI	ACTGG	2 cut(s)	478, 1594
BssAI	RCCGGY	3 cut(s)	248, 570, 574
BssECI	CCNNGG	3 cut(s)	846, 1346, 1948
BssHII	GCGCGC	1 cut(s)	1405
BssMI	GATC	5 cut(s)	1134, 1308, 1537, 1668, 1932
BssNAI	GTATAC	1 cut(s)	1164
BssT1I	CCWWGG	2 cut(s)	846, 1948
Bst1107I	GTATAC	1 cut(s)	1164
Bst2UI	CCWGG	2 cut(s)	232, 1347
Bst4CI	ACNGT	2 cut(s)	266, 1664
Bst6I	CTCTTC	4 cut(s)	67, 72, 1470, 1821
BstAPI	GCANNNNNTGC	1 cut(s)	1112
BstDEI	CTNAG	4 cut(s)	479, 516, 795, 1928
BstDSI	CCRYGG	2 cut(s)	846, 1948
BstENI	CCTNNNNNAGG	1 cut(s)	1756
BstF5I	GGATG	3 cut(s)	5, 787, 1401
BstFNI	CGCG	3 cut(s)	309, 977, 1407
BstHHI	GCGC	4 cut(s)	347, 1009, 1407, 1409
BstKTI	GATC	5 cut(s)	1137, 1311, 1540, 1671, 1935
BstMAI	GTCTC	4 cut(s)	55, 377, 477, 838
BstMBI	GATC	5 cut(s)	1134, 1308, 1537, 1668, 1932
BstMCI	CGRYCG	1 cut(s)	575
BstMWI	GCNNNNNNNGC	9 cut(s)	86, 245, 353, 413, 751, 1019, 1103, 1112, 1187
BstNI	CCWGG	2 cut(s)	232, 1347
BstNSI	RCATGY	9 cut(s)	154, 304, 401, 550, 1069, 1181, 1275, 1306, 1368
BstSCI	CCNGG	4 cut(s)	230, 375, 416, 1345
BstSFI	CTRYAG	2 cut(s)	1660, 2044
BstSLI	GKGCMC	1 cut(s)	1057
BstUI	CGCG	3 cut(s)	309, 977, 1407
BstV1I	GCAGC	3 cut(s)	841, 1501, 1595
BstX2I	RGATCY	2 cut(s)	1308, 1932
BstYI	RGATCY	2 cut(s)	1308, 1932
BstZ17I	GTATAC	1 cut(s)	1164
BstZI	CGGCCG	1 cut(s)	572
Bsu36I	CCTNAGG	1 cut(s)	1928
BsuI	GTATCC	1 cut(s)	661
BsuRI	GGCC	7 cut(s)	75, 252, 356, 416, 574, 1881, 2034
BtgI	CCRYGG	2 cut(s)	846, 1948
BtgZI	GCGATG	4 cut(s)	229, 730, 1130, 1163
BtsCI	GGATG	3 cut(s)	5, 787, 1401
BtsI	GCAGTG	2 cut(s)	454, 564
BtsIMutI	CAGTG	3 cut(s)	454, 564, 747
BveI	ACCTGC	1 cut(s)	1584
CaiI	CAGNNNCTG	1 cut(s)	1589
CfoI	GCGC	4 cut(s)	347, 1009, 1407, 1409
Cfr10I	RCCGGY	3 cut(s)	248, 570, 574
Cfr13I	GGNCC	2 cut(s)	73, 234
Csp6I	GTAC	4 cut(s)	154, 463, 1783, 1849
CviQI	GTAC	4 cut(s)	154, 463, 1783, 1849
DdeI	CTNAG	4 cut(s)	479, 516, 795, 1928
DpnI	GATC	5 cut(s)	1136, 1310, 1539, 1670, 1934
DpnII	GATC	5 cut(s)	1134, 1308, 1537, 1668, 1932
EaeI	YGGCCR	2 cut(s)	572, 2032
EagI	CGGCCG	1 cut(s)	572
Eam1104I	CTCTTC	4 cut(s)	67, 72, 1470, 1821
EarI	CTCTTC	4 cut(s)	67, 72, 1470, 1821
EciI	GGCGGA	3 cut(s)	34, 169, 308
EclXI	CGGCCG	1 cut(s)	572
Eco130I	CCWWGG	2 cut(s)	846, 1948
Eco147I	AGGCCT	1 cut(s)	356
Eco47I	GGWCC	1 cut(s)	234
Eco52I	CGGCCG	1 cut(s)	572
Eco81I	CCTNAGG	1 cut(s)	1928
EcoNI	CCTNNNNNAGG	1 cut(s)	1756
EcoRI	GAATTC	2 cut(s)	628, 1726
EcoRII	CCWGG	2 cut(s)	230, 1345
EcoT14I	CCWWGG	2 cut(s)	846, 1948
EcoT22I	ATGCAT	1 cut(s)	1366
ErhI	CCWWGG	2 cut(s)	846, 1948
Esp3I	CGTCTC	3 cut(s)	55, 377, 477
FalI	AAGNNNNNCTT	2 cut(s)	1596, 1628
FauI	CCCGC	5 cut(s)	224, 607, 897, 1210, 1276
FbaI	TGATCA	1 cut(s)	1134
FblI	GTMKAC	2 cut(s)	1163, 1980
Fnu4HI	GCNGC	5 cut(s)	81, 307, 855, 1515, 1584
FokI	GGATG	2 cut(s)	794, 1408
Fsp4HI	GCNGC	5 cut(s)	81, 307, 855, 1515, 1584
FspBI	CTAG	2 cut(s)	909, 1382
GlaI	GCGC	4 cut(s)	346, 1008, 1406, 1408
GluI	GCNGC	5 cut(s)	81, 307, 855, 1515, 1584
GsaI	CCCAGC	2 cut(s)	1395, 1782
HaeIII	GGCC	7 cut(s)	75, 252, 356, 416, 574, 1881, 2034
HapII	CCGG	6 cut(s)	249, 360, 377, 417, 571, 575
HhaI	GCGC	4 cut(s)	347, 1009, 1407, 1409
Hin6I	GCGC	4 cut(s)	345, 1007, 1405, 1407
HinP1I	GCGC	4 cut(s)	345, 1007, 1405, 1407
HincII	GTYRAC	2 cut(s)	148, 1063
HindII	GTYRAC	2 cut(s)	148, 1063
HinfI	GANTC	4 cut(s)	311, 972, 1316, 1547
HpaII	CCGG	6 cut(s)	249, 360, 377, 417, 571, 575
HphI	GGTGA	6 cut(s)	193, 220, 325, 589, 830, 1027
Hpy188I	TCNGA	5 cut(s)	101, 386, 667, 1732, 1840
Hpy188III	TCNNGA	4 cut(s)	779, 969, 1678, 1790
Hpy99I	CGWCG	2 cut(s)	227, 676
HpyCH4III	ACNGT	2 cut(s)	266, 1664
HpyCH4IV	ACGT	2 cut(s)	671, 1785
HpyF10VI	GCNNNNNNNGC	9 cut(s)	86, 245, 353, 413, 751, 1019, 1103, 1112, 1187
HpyF3I	CTNAG	4 cut(s)	479, 516, 795, 1928
HpySE526I	ACGT	2 cut(s)	671, 1785
HspAI	GCGC	4 cut(s)	345, 1007, 1405, 1407
KpnI	GGTACC	1 cut(s)	1852
KroI	GCCGGC	2 cut(s)	248, 570
KroNI	GCCGGC	2 cut(s)	250, 572
Ksp22I	TGATCA	1 cut(s)	1134
Kzo9I	GATC	5 cut(s)	1134, 1308, 1537, 1668, 1932
LguI	GCTCTTC	2 cut(s)	67, 1470
LmnI	GCTCC	4 cut(s)	224, 622, 848, 2045
Lsp1109I	GCAGC	3 cut(s)	841, 1501, 1595
LweI	GCATC	6 cut(s)	478, 1084, 1102, 1107, 1177, 1419
MaeI	CTAG	2 cut(s)	909, 1382
MaeII	ACGT	2 cut(s)	671, 1785
MaeIII	GTNAC	3 cut(s)	226, 696, 1246
MalI	GATC	5 cut(s)	1136, 1310, 1539, 1670, 1934
MbiI	CCGCTC	2 cut(s)	219, 281
MboI	GATC	5 cut(s)	1134, 1308, 1537, 1668, 1932
MflI	RGATCY	2 cut(s)	1308, 1932
MhlI	GDGCHC	4 cut(s)	747, 845, 1057, 1465
MlsI	TGGCCA	1 cut(s)	2034
MluNI	TGGCCA	1 cut(s)	2034
MlyI	GAGTC	3 cut(s)	305, 966, 1541
MmeI	TCCRAC	6 cut(s)	133, 159, 364, 1121, 1466, 1646
Mox20I	TGGCCA	1 cut(s)	2034
Mph1103I	ATGCAT	1 cut(s)	1366
MroNI	GCCGGC	2 cut(s)	248, 570
MscI	TGGCCA	1 cut(s)	2034
MseI	TTAA	4 cut(s)	1233, 1437, 1757, 1917
MslI	CAYNNNNRTG	3 cut(s)	1253, 1255, 1613
Msp20I	TGGCCA	1 cut(s)	2034
MspI	CCGG	6 cut(s)	249, 360, 377, 417, 571, 575
MspR9I	CCNGG	4 cut(s)	232, 377, 418, 1347
Mva1269I	GAATGC	4 cut(s)	544, 559, 1150, 1687
MvaI	CCWGG	2 cut(s)	232, 1347
MvnI	CGCG	3 cut(s)	309, 977, 1407
MwoI	GCNNNNNNNGC	9 cut(s)	86, 245, 353, 413, 751, 1019, 1103, 1112, 1187
NaeI	GCCGGC	2 cut(s)	250, 572
NciI	CCSGG	2 cut(s)	377, 418
NcoI	CCATGG	2 cut(s)	846, 1948
NdeII	GATC	5 cut(s)	1134, 1308, 1537, 1668, 1932
NgoMIV	GCCGGC	2 cut(s)	248, 570
NlaIV	GGNNCC	3 cut(s)	624, 1130, 1850
NmeAIII	GCCGAG	2 cut(s)	101, 1123
NmuCI	GTSAC	2 cut(s)	226, 1246
NsiI	ATGCAT	1 cut(s)	1366
NspI	RCATGY	9 cut(s)	154, 304, 401, 550, 1069, 1181, 1275, 1306, 1368
OliI	CACNNNNGTG	2 cut(s)	1253, 1613
PaeI	GCATGC	2 cut(s)	401, 1306
PaqCI	CACCTGC	1 cut(s)	1584
PauI	GCGCGC	1 cut(s)	1405
PceI	AGGCCT	1 cut(s)	356
PciI	ACATGT	4 cut(s)	150, 300, 546, 1065
PciSI	GCTCTTC	2 cut(s)	67, 1470
PcsI	WCGNNNNNNNCGW	1 cut(s)	671
PctI	GAATGC	4 cut(s)	544, 559, 1150, 1687
PdiI	GCCGGC	2 cut(s)	250, 572
PfeI	GAWTC	1 cut(s)	1316
PflFI	GACNNNGTC	1 cut(s)	314
PkrI	GCNGC	5 cut(s)	82, 308, 856, 1516, 1585
PleI	GAGTC	3 cut(s)	305, 966, 1541
PpsI	GAGTC	3 cut(s)	305, 966, 1541
PscI	ACATGT	4 cut(s)	150, 300, 546, 1065
PshBI	ATTAAT	1 cut(s)	1437
Psp6I	CCWGG	2 cut(s)	230, 1345
PspFI	CCCAGC	2 cut(s)	1391, 1778
PspGI	CCWGG	2 cut(s)	230, 1345
PspN4I	GGNNCC	3 cut(s)	624, 1130, 1850
PspPI	GGNCC	2 cut(s)	73, 234
PstNI	CAGNNNCTG	1 cut(s)	1589
PsuI	RGATCY	2 cut(s)	1308, 1932
PsyI	GACNNNGTC	1 cut(s)	314
PteI	GCGCGC	1 cut(s)	1405
RsaI	GTAC	4 cut(s)	155, 464, 1784, 1850
RsaNI	GTAC	4 cut(s)	154, 463, 1783, 1849
RseI	CAYNNNNRTG	3 cut(s)	1253, 1255, 1613
SapI	GCTCTTC	2 cut(s)	67, 1470
SaqAI	TTAA	4 cut(s)	1233, 1437, 1757, 1917
SatI	GCNGC	5 cut(s)	81, 307, 855, 1515, 1584
Sau3AI	GATC	5 cut(s)	1134, 1308, 1537, 1668, 1932
Sau96I	GGNCC	2 cut(s)	73, 234
SchI	GAGTC	3 cut(s)	305, 966, 1541
ScrFI	CCNGG	4 cut(s)	232, 377, 418, 1347
SduI	GDGCHC	4 cut(s)	747, 845, 1057, 1465
SfaNI	GCATC	6 cut(s)	478, 1084, 1102, 1107, 1177, 1419
SfcI	CTRYAG	2 cut(s)	1660, 2044
SinI	GGWCC	1 cut(s)	234
SmiMI	CAYNNNNRTG	3 cut(s)	1253, 1255, 1613
SphI	GCATGC	2 cut(s)	401, 1306
SseBI	AGGCCT	1 cut(s)	356
SspMI	CTAG	2 cut(s)	909, 1382
StuI	AGGCCT	1 cut(s)	356
StyD4I	CCNGG	4 cut(s)	230, 375, 416, 1345
StyI	CCWWGG	2 cut(s)	846, 1948
TaaI	ACNGT	2 cut(s)	266, 1664
TaiI	ACGT	2 cut(s)	674, 1788
TaqI	TCGA	5 cut(s)	165, 551, 632, 807, 947
TatI	WGTACW	2 cut(s)	153, 462
TauI	GCSGC	2 cut(s)	83, 309
TfiI	GAWTC	1 cut(s)	1316
Tru1I	TTAA	4 cut(s)	1233, 1437, 1757, 1917
Tru9I	TTAA	4 cut(s)	1233, 1437, 1757, 1917
TscAI	CASTG	3 cut(s)	454, 564, 747
TseFI	GTSAC	2 cut(s)	226, 1246
TseI	GCWGC	3 cut(s)	854, 1514, 1583
Tsp45I	GTSAC	2 cut(s)	226, 1246
TspDTI	ATGAA	9 cut(s)	522, 928, 992, 1337, 1643, 1734, 1739, 1954, 2006
TspGWI	ACGGA	3 cut(s)	211, 304, 1047
TspRI	CASTG	3 cut(s)	454, 564, 747
Tth111I	GACNNNGTC	1 cut(s)	314
VneI	GTGCAC	1 cut(s)	1053
VpaK11BI	GGWCC	1 cut(s)	234
VspI	ATTAAT	1 cut(s)	1437
XagI	CCTNNNNNAGG	1 cut(s)	1756
XapI	RAATTY	5 cut(s)	628, 1726, 1734, 1798, 1961
XceI	RCATGY	9 cut(s)	154, 304, 401, 550, 1069, 1181, 1275, 1306, 1368
XmiI	GTMKAC	2 cut(s)	1163, 1980
XspI	CTAG	2 cut(s)	909, 1382
Zsp2I	ATGCAT	1 cut(s)	1366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.