FvH4_6g27650

Aspartate aminotransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
21313591 .. 21319209
5619 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27650.t4

Sequence Viewer

Length: 1086 bp
ATGGCGCTCTCCTCCAAGCTTTTTCGACGGAGCTCCTCCTCCACCACAGCCTTGGCCGCGCGATCCATGTCCTGGTGGCGGACTGTCCAACCAGCTCCCAAAGACCCCATCCTCGGCGTCACCGAAGCCTTTCTCGCCGATCCCTCTCCTCACAAAGTCAATGTCGGAGTCGGTGCCTACCGTGACGACAATGGGAAGCCGGTTGTTCTGGAATGCGTTAGAGAAGCAGAGCGCAGAATTGCCGGAAATTTGAACATGGAATATCTTCCTATGGGGGGCAGTGTGAAGATGGTGGAAGAAACATTGAAGTTGGCTTATGGAGAGACTTCTGAATGCCTCAAAGATAAAAGGATAGCAGCAGTGCAATCTCTCTCTGGGACCGGTGCATGTCGTCTTTTTGCAGACTTTCAGAAACGTTTTCGTCCAGATTCTCATATCTATATTCCAGTGCCAACATGGTCCAACCACCATAACATCTGGAGAGATGCCCAGGTCCCAGAAAGGACTTATCATTACTATCATCCAGAGACTAAGGGATTGGACTTTGCAGGACTGATTGATGACATAAAGAATGCTCCAAGTGGCTCATTCTTTCTTCTTCATGCATGTGCTCACAATCCCACTGGAGTTGATCCTTCAGAGGAACAATGGAAAGAGATCTCATACCAAATGAAGGGTAAAGGTCATTTTCCCTTCTTTGACATGGCATATCAAGGGTTTGCTAGTGGTGACCCAGAGAATGATGCAAAAGCCATCAGGATTTTTCTCGAGGATGGTCATCTAATTGGAATTTCTCAATCTTATGCAAAAAATATGGGACTCTATGGCCAGAGAGTTGGATGCCTTAGCTTGCTTTGTGAGGATGAAAAACAAGCTGTGGCTGTAAAAAGTCAGTTGCAGCAGCTTGCCAGACCCATGTATAGTAATCCACCTGTTCATGGACCCCTTATAGTGTCAACTATTCTTGGTGATCCAGACTTGAAGAATTTGTGGCTCCGAGAAGTTGAGATCGCATTATCGGAATGCGAACTGCTCTACGAGAAAATCTTGAGAAATTGGGATCACCCTTATCTTGGGAGCACATAA

Protein Analysis

362

Amino Acids

40.42

Weight (kDa)

6.32

Isoelectric Point (pI)

54.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 51 - 337 9.7e-70 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AccB7I CCANNNNNTGG 1 cut(s) 72
AccII CGCG 2 cut(s) 59, 61
AciI CCGC 2 cut(s) 57, 79
AclI AACGTT 1 cut(s) 415
AclWI GGATC 5 cut(s) 57, 134, 626, 965, 1068
AcoI YGGCCR 2 cut(s) 54, 826
AcsI RAATTY 3 cut(s) 247, 789, 985
AcuI CTGAAG 1 cut(s) 621
AcyI GRCGYC 1 cut(s) 117
AfiI CCNNNNNNNGG 7 cut(s) 72, 78, 113, 275, 673, 938, 1073
AgeI ACCGGT 1 cut(s) 380
AgsI TTSAA 3 cut(s) 253, 307, 982
AjnI CCWGG 2 cut(s) 71, 489
AluBI AGCT 6 cut(s) 19, 33, 95, 849, 875, 904
AluI AGCT 6 cut(s) 19, 33, 95, 849, 875, 904
Alw21I GWGCWC 3 cut(s) 35, 613, 1082
Alw26I GTCTC 2 cut(s) 317, 521
AlwI GGATC 5 cut(s) 57, 134, 626, 965, 1068
Ama87I CYCGRG 1 cut(s) 767
AoxI GGCC 2 cut(s) 54, 826
ApeKI GCWGC 3 cut(s) 356, 898, 901
ApoI RAATTY 3 cut(s) 247, 789, 985
ArsI GACNNNNNNTTYG 2 cut(s) 147, 179
AsiGI ACCGGT 1 cut(s) 380
Asp700I GAANNNNTTC 2 cut(s) 129, 264
AspLEI GCGC 3 cut(s) 7, 61, 234
AspS9I GGNCC 4 cut(s) 378, 459, 493, 941
AsuHPI GGTGA 4 cut(s) 112, 740, 980, 1055
AvaI CYCGRG 1 cut(s) 767
AvaII GGWCC 4 cut(s) 378, 459, 493, 941
BalI TGGCCA 1 cut(s) 828
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 35
Bbv12I GWGCWC 3 cut(s) 35, 613, 1082
BbvI GCAGC 3 cut(s) 368, 910, 913
BccI CCATC 4 cut(s) 116, 283, 761, 767
BciT130I CCWGG 2 cut(s) 73, 491
BcoDI GTCTC 2 cut(s) 317, 521
BfaI CTAG 1 cut(s) 723
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 1 cut(s) 657
BisI GCNGC 4 cut(s) 57, 357, 899, 902
BlsI GCNGC 4 cut(s) 58, 358, 900, 903
Bme1390I CCNGG 2 cut(s) 73, 491
Bme18I GGWCC 4 cut(s) 378, 459, 493, 941
BmeT110I CYCGRG 1 cut(s) 767
BmgT120I GGNCC 4 cut(s) 378, 459, 493, 941
BmiI GGNNCC 5 cut(s) 175, 379, 495, 943, 995
BmrFI CCNGG 2 cut(s) 73, 491
BmsI GCATC 3 cut(s) 475, 733, 830
BpmI CTGGAG 2 cut(s) 499, 645
Bpu10I CCTNAGC 1 cut(s) 845
BpuEI CTTGAG 1 cut(s) 1069
BsaBI GATNNNNATC 1 cut(s) 777
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 3 cut(s) 51, 112, 489
BsaWI WCCGGW 1 cut(s) 380
Bsc4I CCNNNNNNNGG 7 cut(s) 72, 78, 113, 275, 673, 938, 1073
Bse118I RCCGGY 2 cut(s) 199, 380
Bse1I ACTGG 2 cut(s) 446, 628
Bse8I GATNNNNATC 1 cut(s) 777
BseBI CCWGG 2 cut(s) 73, 491
BseDI CCNNGG 3 cut(s) 51, 112, 489
BseGI GGATG 5 cut(s) 108, 520, 778, 845, 868
BseJI GATNNNNATC 1 cut(s) 777
BseLI CCNNNNNNNGG 7 cut(s) 72, 78, 113, 275, 673, 938, 1073
BseNI ACTGG 2 cut(s) 446, 628
BseRI GAGGAG 3 cut(s) 25, 28, 138
BseXI GCAGC 3 cut(s) 368, 910, 913
Bsh1236I CGCG 2 cut(s) 59, 61
BshFI GGCC 2 cut(s) 56, 828
BshNI GGYRCC 1 cut(s) 173
BshTI ACCGGT 1 cut(s) 380
BsiHKAI GWGCWC 3 cut(s) 35, 613, 1082
BsiHKCI CYCGRG 1 cut(s) 767
BsiSI CCGG 3 cut(s) 200, 243, 381
BslFI GGGAC 3 cut(s) 391, 479, 831
BslI CCNNNNNNNGG 7 cut(s) 72, 78, 113, 275, 673, 938, 1073
BsmAI GTCTC 2 cut(s) 317, 521
BsmFI GGGAC 3 cut(s) 391, 479, 831
BsmI GAATGC 4 cut(s) 218, 338, 577, 1028
BsnI GGCC 2 cut(s) 56, 828
BsoBI CYCGRG 1 cut(s) 767
Bsp1286I GDGCHC 3 cut(s) 35, 613, 1082
Bsp143I GATC 7 cut(s) 62, 139, 631, 657, 970, 1008, 1060
BspACI CCGC 2 cut(s) 57, 79
BspANI GGCC 2 cut(s) 56, 828
BspFNI CGCG 2 cut(s) 59, 61
BspLI GGNNCC 5 cut(s) 175, 379, 495, 943, 995
BspPI GGATC 5 cut(s) 57, 134, 626, 965, 1068
BspT107I GGYRCC 1 cut(s) 173
BsrFI RCCGGY 2 cut(s) 199, 380
BsrI ACTGG 2 cut(s) 446, 628
BssAI RCCGGY 2 cut(s) 199, 380
BssECI CCNNGG 3 cut(s) 51, 112, 489
BssMI GATC 7 cut(s) 62, 139, 631, 657, 970, 1008, 1060
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 51
Bst2UI CCWGG 2 cut(s) 73, 491
Bst4CI ACNGT 2 cut(s) 85, 182
BstACI GRCGYC 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 851, 906
BstDEI CTNAG 2 cut(s) 531, 845
BstEII GGTNACC 1 cut(s) 728
BstF5I GGATG 5 cut(s) 108, 520, 778, 845, 868
BstFNI CGCG 2 cut(s) 59, 61
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 3 cut(s) 7, 61, 234
BstKTI GATC 7 cut(s) 65, 142, 634, 660, 973, 1011, 1063
BstMAI GTCTC 2 cut(s) 317, 521
BstMBI GATC 7 cut(s) 62, 139, 631, 657, 970, 1008, 1060
BstMWI GCNNNNNNNGC 2 cut(s) 56, 134
BstNI CCWGG 2 cut(s) 73, 491
BstNSI RCATGY 2 cut(s) 390, 609
BstPI GGTNACC 1 cut(s) 728
BstSCI CCNGG 2 cut(s) 71, 489
BstUI CGCG 2 cut(s) 59, 61
BstV1I GCAGC 3 cut(s) 368, 910, 913
BstX2I RGATCY 1 cut(s) 657
BstXI CCANNNNNNTGG 2 cut(s) 52, 836
BstYI RGATCY 1 cut(s) 657
BsuRI GGCC 2 cut(s) 56, 828
BtsCI GGATG 5 cut(s) 108, 520, 778, 845, 868
BtsI GCAGTG 2 cut(s) 286, 366
BtsIMutI CAGTG 4 cut(s) 286, 366, 453, 621
Cac8I GCNNGC 2 cut(s) 851, 906
CfoI GCGC 3 cut(s) 7, 61, 234
Cfr10I RCCGGY 2 cut(s) 199, 380
Cfr13I GGNCC 4 cut(s) 378, 459, 493, 941
CseI GACGC 1 cut(s) 106
CspAI ACCGGT 1 cut(s) 380
CspCI CAANNNNNGTGG 2 cut(s) 610, 645
CviAII CATG 9 cut(s) 67, 256, 387, 456, 602, 606, 703, 916, 938
DdeI CTNAG 2 cut(s) 531, 845
DpnI GATC 7 cut(s) 64, 141, 633, 659, 972, 1010, 1062
DpnII GATC 7 cut(s) 62, 139, 631, 657, 970, 1008, 1060
EaeI YGGCCR 2 cut(s) 54, 826
EciI GGCGGA 1 cut(s) 94
Ecl136II GAGCTC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 35
Eco47I GGWCC 4 cut(s) 378, 459, 493, 941
Eco53kI GAGCTC 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 621
Eco88I CYCGRG 1 cut(s) 767
Eco91I GGTNACC 1 cut(s) 728
EcoICRI GAGCTC 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 493
EcoO65I GGTNACC 1 cut(s) 728
EcoRII CCWGG 2 cut(s) 71, 489
EcoT14I CCWWGG 1 cut(s) 51
EcoT22I ATGCAT 1 cut(s) 607
EcoT38I GRGCYC 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 9 cut(s) 70, 259, 390, 459, 605, 609, 706, 919, 941
FaqI GGGAC 3 cut(s) 391, 479, 831
FatI CATG 9 cut(s) 66, 255, 386, 455, 601, 605, 702, 915, 937
Fnu4HI GCNGC 4 cut(s) 57, 357, 899, 902
FokI GGATG 5 cut(s) 95, 507, 785, 852, 875
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 4 cut(s) 57, 357, 899, 902
FspBI CTAG 1 cut(s) 723
GlaI GCGC 3 cut(s) 6, 60, 233
GluI GCNGC 4 cut(s) 57, 357, 899, 902
GsuI CTGGAG 2 cut(s) 499, 645
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 56, 828
HapII CCGG 3 cut(s) 200, 243, 381
HgaI GACGC 1 cut(s) 106
HhaI GCGC 3 cut(s) 7, 61, 234
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 9 cut(s) 70, 259, 390, 459, 605, 609, 706, 919, 941
Hin6I GCGC 3 cut(s) 5, 59, 232
HinP1I GCGC 3 cut(s) 5, 59, 232
HincII GTYRAC 1 cut(s) 957
HindII GTYRAC 1 cut(s) 957
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 3 cut(s) 168, 428, 819
HpaII CCGG 3 cut(s) 200, 243, 381
HphI GGTGA 4 cut(s) 112, 740, 980, 1055
Hpy166II GTNNAC 1 cut(s) 957
Hpy188I TCNGA 6 cut(s) 167, 331, 411, 640, 998, 1021
Hpy188III TCNNGA 8 cut(s) 209, 425, 478, 524, 757, 767, 974, 1048
Hpy8I GTNNAC 1 cut(s) 957
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 3 cut(s) 645, 667, 703
HpyCH4III ACNGT 2 cut(s) 85, 182
HpyCH4IV ACGT 1 cut(s) 415
HpyCH4V TGCA 8 cut(s) 364, 386, 401, 548, 605, 746, 806, 898
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 134
HpyF3I CTNAG 2 cut(s) 531, 845
HpySE526I ACGT 1 cut(s) 415
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 9 cut(s) 70, 259, 390, 459, 605, 609, 706, 919, 941
HspAI GCGC 3 cut(s) 5, 59, 232
Kzo9I GATC 7 cut(s) 62, 139, 631, 657, 970, 1008, 1060
LmnI GCTCC 6 cut(s) 30, 38, 100, 580, 999, 1077
Lsp1109I GCAGC 3 cut(s) 368, 910, 913
LweI GCATC 3 cut(s) 475, 733, 830
MaeI CTAG 1 cut(s) 723
MaeII ACGT 1 cut(s) 415
MaeIII GTNAC 3 cut(s) 118, 182, 728
MalI GATC 7 cut(s) 64, 141, 633, 659, 972, 1010, 1062
MboI GATC 7 cut(s) 62, 139, 631, 657, 970, 1008, 1060
MboII GAAGA 6 cut(s) 257, 298, 308, 587, 590, 994
MflI RGATCY 1 cut(s) 657
MhlI GDGCHC 3 cut(s) 35, 613, 1082
MlsI TGGCCA 1 cut(s) 828
MluCI AATT 6 cut(s) 237, 247, 783, 789, 985, 1054
MluNI TGGCCA 1 cut(s) 828
MlyI GAGTC 2 cut(s) 177, 813
MmeI TCCRAC 4 cut(s) 112, 145, 486, 817
Mox20I TGGCCA 1 cut(s) 828
Mph1103I ATGCAT 1 cut(s) 607
MroXI GAANNNNTTC 2 cut(s) 129, 264
MscI TGGCCA 1 cut(s) 828
MslI CAYNNNNRTG 1 cut(s) 606
Msp20I TGGCCA 1 cut(s) 828
MspI CCGG 3 cut(s) 200, 243, 381
MspR9I CCNGG 2 cut(s) 73, 491
Mva1269I GAATGC 4 cut(s) 218, 338, 577, 1028
MvaI CCWGG 2 cut(s) 73, 491
MvnI CGCG 2 cut(s) 59, 61
MwoI GCNNNNNNNGC 2 cut(s) 56, 134
NdeII GATC 7 cut(s) 62, 139, 631, 657, 970, 1008, 1060
NlaIII CATG 9 cut(s) 70, 259, 390, 459, 605, 609, 706, 919, 941
NlaIV GGNNCC 5 cut(s) 175, 379, 495, 943, 995
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 3 cut(s) 118, 182, 728
NsiI ATGCAT 1 cut(s) 607
NspI RCATGY 2 cut(s) 390, 609
PaeR7I CTCGAG 1 cut(s) 767
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PctI GAATGC 4 cut(s) 218, 338, 577, 1028
PdmI GAANNNNTTC 2 cut(s) 129, 264
PfeI GAWTC 1 cut(s) 428
PflMI CCANNNNNTGG 1 cut(s) 72
PinAI ACCGGT 1 cut(s) 380
PkrI GCNGC 4 cut(s) 58, 358, 900, 903
PleI GAGTC 2 cut(s) 176, 813
PpsI GAGTC 2 cut(s) 176, 813
PpuMI RGGWCCY 1 cut(s) 493
Psp124BI GAGCTC 1 cut(s) 35
Psp1406I AACGTT 1 cut(s) 415
Psp5II RGGWCCY 1 cut(s) 493
Psp6I CCWGG 2 cut(s) 71, 489
PspEI GGTNACC 1 cut(s) 728
PspGI CCWGG 2 cut(s) 71, 489
PspN4I GGNNCC 5 cut(s) 175, 379, 495, 943, 995
PspPI GGNCC 4 cut(s) 378, 459, 493, 941
PspPPI RGGWCCY 1 cut(s) 493
PsuI RGATCY 1 cut(s) 657
RseI CAYNNNNRTG 1 cut(s) 606
SacI GAGCTC 1 cut(s) 35
SatI GCNGC 4 cut(s) 57, 357, 899, 902
Sau3AI GATC 7 cut(s) 62, 139, 631, 657, 970, 1008, 1060
Sau96I GGNCC 4 cut(s) 378, 459, 493, 941
SchI GAGTC 2 cut(s) 177, 813
ScrFI CCNGG 2 cut(s) 73, 491
SduI GDGCHC 3 cut(s) 35, 613, 1082
SfaNI GCATC 3 cut(s) 475, 733, 830
Sfr274I CTCGAG 1 cut(s) 767
SinI GGWCC 4 cut(s) 378, 459, 493, 941
SlaI CTCGAG 1 cut(s) 767
SmiMI CAYNNNNRTG 1 cut(s) 606
SmlI CTYRAG 2 cut(s) 767, 1048
SmoI CTYRAG 2 cut(s) 767, 1048
Sse9I AATT 6 cut(s) 237, 247, 783, 789, 985, 1054
SsiI CCGC 2 cut(s) 57, 79
SspMI CTAG 1 cut(s) 723
SstI GAGCTC 1 cut(s) 35
StyD4I CCNGG 2 cut(s) 71, 489
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 2 cut(s) 85, 182
TaiI ACGT 1 cut(s) 418
TaqI TCGA 2 cut(s) 25, 768
TasI AATT 6 cut(s) 237, 247, 783, 789, 985, 1054
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 1 cut(s) 428
TscAI CASTG 4 cut(s) 286, 366, 453, 628
TseFI GTSAC 3 cut(s) 118, 182, 728
TseI GCWGC 3 cut(s) 356, 898, 901
Tsp45I GTSAC 3 cut(s) 118, 182, 728
TspDTI ATGAA 4 cut(s) 590, 686, 879, 926
TspGWI ACGGA 1 cut(s) 43
TspRI CASTG 4 cut(s) 286, 366, 453, 628
Van91I CCANNNNNTGG 1 cut(s) 72
VpaK11BI GGWCC 4 cut(s) 378, 459, 493, 941
XapI RAATTY 3 cut(s) 247, 789, 985
XceI RCATGY 2 cut(s) 390, 609
XcmI CCANNNNNNNNNTGG 2 cut(s) 49, 453
XhoI CTCGAG 1 cut(s) 767
XmnI GAANNNNTTC 2 cut(s) 129, 264
XspI CTAG 1 cut(s) 723
Zsp2I ATGCAT 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.