RLG00000019136

Aspartate aminotransferase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
47157050 .. 47162343
5294 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019136

Sequence Viewer

Length: 1278 bp
ATGGCGCTCTCCACCAAGCTTTTTCAACGGAGGAGCTCCAGCTCCACCGCAGTAGTCTTGGGCGCGCGATCCATGTCCTGGTGGCGGAGTGTCCAACCGGCTCCCAAAGATCCCATTCTCGGCGTCACCGAAGCCTTCCTCGCCGATCCCAGTCCCAACAAAGTCAATGTTGGAGTCGGTGCGTACCGTGATGACAATGGAAAGCCGGTTGTTTTGGAATGCGTTAGAGAAGCGGAGCGGAGGGTTGCCGGAAAATTGAACATGGAATATCTTCCTATGGGGGGCAGTGTGAGGATGGTGGAAGAAACATTGAAGCTGGCCTATGGAGAGACTTCTGAAGTTCTCAAAGATAAAAGGATAGCAGCAGTGCAATCTCTCTCTGGGACTGGTGCATGTCGTCTTTTTGCAGACTTTCAAAAACGTTTTCGTCCAGATTCTAATATCTATATTCCAGTGCCAACATGGGCCAACCACCATAACATCTGGAGAGATGCCCAGGTCCCTCAAAGGACTTTCCATTACTATCATCCAGAGACTAAGGGTTTGGACTTTGCAGGACTGATTGATGACATAAAGAATGCTCCAAGTGGCTCATTCTTTCTACTTCATGCATGTGCTCACAATCCCACTGGAGTTGATCCTTCAGAGGAACAATGGAAAGAGATCTCATACCAAATCAAGGGTAAAGGTCATTTTGCCTTCTTTGACATGGCATATCAAGGTTTTGCTAGTGGTGACCCAGAGAAAGATGCAAAAGCCATCAGGATTTTTCTCGAGGATGGTCATCTAATTGGAATTTCTCAATCTTATGCAAAAAATATGGGACTCTATGGTCAGAGAGTAGGATGCCTTAGCTTGCTTTGTGAGGATGAAAAACAAGCTGTGGCTGTAAAAAGTCAGTTGCAGCAGCTTGCCAGACCCATGTATAGTAACCCACCTGTTCATGGACCACTTATAGTGTCAACTATCCTTGGTGATCCAGACTTGAAGAATTTGTGGCTCCGAGAAGTTAAGGGCATGGCAGATCGCATTATCGGAATGCGAACTGCTCTACGAGAAAATCTTCAGAAATTGGGATCACCCTTATCTTGGGAGCACATTACAAATCAGATTGGCATGTTTTGCTATAGCGGAATGACACCTGAACAGGTTGATCGTTTGACAAATGAGTTTCATATATATTTGACTCGCAATGGTCGAATAAGTATGGCGGGTGTTACAACGGGCAATGTTGGATATCTGGCAAATGCTATACATGAAGTAACAAAATCTGCATAG

Protein Analysis

426

Amino Acids

47.23

Weight (kDa)

8.59

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 53 - 418 3.9e-91 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 831
AccB7I CCANNNNNTGG 1 cut(s) 78
AccBSI CCGCTC 1 cut(s) 238
AccII CGCG 2 cut(s) 65, 67
AciI CCGC 6 cut(s) 48, 85, 233, 238, 1131, 1211
AclI AACGTT 1 cut(s) 421
AclWI GGATC 6 cut(s) 63, 104, 140, 632, 971, 1084
AcsI RAATTY 2 cut(s) 795, 991
AcuI CTGAAG 3 cut(s) 357, 627, 1049
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 7 cut(s) 78, 84, 119, 281, 679, 944, 1089
AgsI TTSAA 5 cut(s) 26, 259, 313, 416, 988
AjnI CCWGG 2 cut(s) 77, 495
AluBI AGCT 7 cut(s) 19, 36, 42, 316, 855, 881, 910
AluI AGCT 7 cut(s) 19, 36, 42, 316, 855, 881, 910
Alw21I GWGCWC 3 cut(s) 38, 619, 1098
Alw26I GTCTC 2 cut(s) 323, 527
AlwI GGATC 6 cut(s) 63, 104, 140, 632, 971, 1084
Ama87I CYCGRG 1 cut(s) 773
AoxI GGCC 2 cut(s) 318, 465
ApeKI GCWGC 3 cut(s) 362, 904, 907
ApoI RAATTY 2 cut(s) 795, 991
ArsI GACNNNNNNTTYG 2 cut(s) 526, 558
Asp700I GAANNNNTTC 2 cut(s) 270, 1062
AspLEI GCGC 3 cut(s) 7, 65, 67
AspS9I GGNCC 3 cut(s) 465, 499, 947
AsuHPI GGTGA 4 cut(s) 118, 746, 986, 1071
AvaI CYCGRG 1 cut(s) 773
AvaII GGWCC 2 cut(s) 499, 947
BanII GRGCYC 1 cut(s) 38
Bbv12I GWGCWC 3 cut(s) 38, 619, 1098
BbvI GCAGC 3 cut(s) 374, 916, 919
BccI CCATC 3 cut(s) 289, 767, 773
BciT130I CCWGG 2 cut(s) 79, 497
BcoDI GTCTC 2 cut(s) 323, 527
BfaI CTAG 1 cut(s) 729
BfmI CTRYAG 1 cut(s) 1126
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 1 cut(s) 663
BisI GCNGC 3 cut(s) 363, 905, 908
BlsI GCNGC 3 cut(s) 364, 906, 909
Bme1390I CCNGG 2 cut(s) 79, 497
Bme18I GGWCC 2 cut(s) 499, 947
BmeT110I CYCGRG 1 cut(s) 773
BmgT120I GGNCC 3 cut(s) 465, 499, 947
BmiI GGNNCC 3 cut(s) 102, 501, 1001
BmrFI CCNGG 2 cut(s) 79, 497
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 3 cut(s) 481, 739, 836
BmuI ACTGGG 1 cut(s) 144
BpmI CTGGAG 3 cut(s) 22, 505, 651
Bpu10I CCTNAGC 1 cut(s) 851
BsaBI GATNNNNATC 1 cut(s) 783
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 495, 970
Bsc4I CCNNNNNNNGG 7 cut(s) 78, 84, 119, 281, 679, 944, 1089
Bse118I RCCGGY 2 cut(s) 97, 205
Bse1I ACTGG 4 cut(s) 150, 391, 452, 634
Bse3DI GCAATG 2 cut(s) 1198, 1234
Bse8I GATNNNNATC 1 cut(s) 783
BseBI CCWGG 2 cut(s) 79, 497
BseDI CCNNGG 2 cut(s) 495, 970
BseGI GGATG 5 cut(s) 300, 526, 784, 851, 874
BseJI GATNNNNATC 1 cut(s) 783
BseLI CCNNNNNNNGG 7 cut(s) 78, 84, 119, 281, 679, 944, 1089
BseMI GCAATG 2 cut(s) 1198, 1234
BseNI ACTGG 4 cut(s) 150, 391, 452, 634
BsePI GCGCGC 1 cut(s) 63
BseRI GAGGAG 1 cut(s) 46
BseXI GCAGC 3 cut(s) 374, 916, 919
Bsh1236I CGCG 2 cut(s) 65, 67
BshFI GGCC 2 cut(s) 320, 467
BsiHKAI GWGCWC 3 cut(s) 38, 619, 1098
BsiHKCI CYCGRG 1 cut(s) 773
BsiSI CCGG 3 cut(s) 98, 206, 249
BslFI GGGAC 4 cut(s) 138, 397, 485, 837
BslI CCNNNNNNNGG 7 cut(s) 78, 84, 119, 281, 679, 944, 1089
BsmAI GTCTC 2 cut(s) 323, 527
BsmFI GGGAC 4 cut(s) 138, 397, 485, 837
BsmI GAATGC 3 cut(s) 224, 583, 1044
BsnI GGCC 2 cut(s) 320, 467
BsoBI CYCGRG 1 cut(s) 773
Bsp1286I GDGCHC 3 cut(s) 38, 619, 1098
Bsp143I GATC 9 cut(s) 68, 109, 145, 637, 663, 976, 1024, 1076, 1153
BspACI CCGC 6 cut(s) 48, 85, 233, 238, 1131, 1211
BspANI GGCC 2 cut(s) 320, 467
BspFNI CGCG 2 cut(s) 65, 67
BspLI GGNNCC 3 cut(s) 102, 501, 1001
BspPI GGATC 6 cut(s) 63, 104, 140, 632, 971, 1084
BsrBI CCGCTC 1 cut(s) 238
BsrDI GCAATG 2 cut(s) 1198, 1234
BsrFI RCCGGY 2 cut(s) 97, 205
BsrI ACTGG 4 cut(s) 150, 391, 452, 634
BssAI RCCGGY 2 cut(s) 97, 205
BssECI CCNNGG 2 cut(s) 495, 970
BssHII GCGCGC 1 cut(s) 63
BssMI GATC 9 cut(s) 68, 109, 145, 637, 663, 976, 1024, 1076, 1153
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 970
Bst2UI CCWGG 2 cut(s) 79, 497
Bst4CI ACNGT 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 123
BstAPI GCANNNNNTGC 1 cut(s) 1122
BstC8I GCNNGC 4 cut(s) 65, 318, 857, 912
BstDEI CTNAG 2 cut(s) 537, 851
BstEII GGTNACC 1 cut(s) 734
BstF5I GGATG 5 cut(s) 300, 526, 784, 851, 874
BstFNI CGCG 2 cut(s) 65, 67
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 3 cut(s) 7, 65, 67
BstKTI GATC 9 cut(s) 71, 112, 148, 640, 666, 979, 1027, 1079, 1156
BstMAI GTCTC 2 cut(s) 323, 527
BstMBI GATC 9 cut(s) 68, 109, 145, 637, 663, 976, 1024, 1076, 1153
BstMWI GCNNNNNNNGC 2 cut(s) 140, 1122
BstNI CCWGG 2 cut(s) 79, 497
BstNSI RCATGY 3 cut(s) 396, 615, 1120
BstPI GGTNACC 1 cut(s) 734
BstSCI CCNGG 2 cut(s) 77, 495
BstSFI CTRYAG 1 cut(s) 1126
BstUI CGCG 2 cut(s) 65, 67
BstV1I GCAGC 3 cut(s) 374, 916, 919
BstX2I RGATCY 2 cut(s) 109, 663
BstYI RGATCY 2 cut(s) 109, 663
BsuRI GGCC 2 cut(s) 320, 467
BtsCI GGATG 5 cut(s) 300, 526, 784, 851, 874
BtsI GCAGTG 2 cut(s) 292, 372
BtsIMutI CAGTG 4 cut(s) 292, 372, 459, 627
Cac8I GCNNGC 4 cut(s) 65, 318, 857, 912
CfoI GCGC 3 cut(s) 7, 65, 67
Cfr10I RCCGGY 2 cut(s) 97, 205
Cfr13I GGNCC 3 cut(s) 465, 499, 947
CseI GACGC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 184
CspCI CAANNNNNGTGG 2 cut(s) 616, 651
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 2 cut(s) 537, 851
DpnI GATC 9 cut(s) 70, 111, 147, 639, 665, 978, 1026, 1078, 1155
DpnII GATC 9 cut(s) 68, 109, 145, 637, 663, 976, 1024, 1076, 1153
DrdI GACNNNNNNGTC 1 cut(s) 831
DseDI GACNNNNNNGTC 1 cut(s) 831
EciI GGCGGA 1 cut(s) 100
Ecl136II GAGCTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 970
Eco24I GRGCYC 1 cut(s) 38
Eco32I GATATC 1 cut(s) 1238
Eco47I GGWCC 2 cut(s) 499, 947
Eco53kI GAGCTC 1 cut(s) 36
Eco57I CTGAAG 3 cut(s) 357, 627, 1049
Eco88I CYCGRG 1 cut(s) 773
Eco91I GGTNACC 1 cut(s) 734
EcoICRI GAGCTC 1 cut(s) 36
EcoO109I RGGNCCY 1 cut(s) 499
EcoO65I GGTNACC 1 cut(s) 734
EcoRII CCWGG 2 cut(s) 77, 495
EcoRV GATATC 1 cut(s) 1238
EcoT14I CCWWGG 1 cut(s) 970
EcoT22I ATGCAT 1 cut(s) 613
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 970
FaqI GGGAC 4 cut(s) 138, 397, 485, 837
FauI CCCGC 1 cut(s) 1204
Fnu4HI GCNGC 3 cut(s) 363, 905, 908
FokI GGATG 5 cut(s) 307, 513, 791, 858, 881
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 3 cut(s) 363, 905, 908
FspBI CTAG 1 cut(s) 729
GlaI GCGC 3 cut(s) 6, 64, 66
GluI GCNGC 3 cut(s) 363, 905, 908
GsuI CTGGAG 3 cut(s) 22, 505, 651
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 320, 467
HapII CCGG 3 cut(s) 98, 206, 249
HgaI GACGC 1 cut(s) 112
HhaI GCGC 3 cut(s) 7, 65, 67
Hin1I GRCGYC 1 cut(s) 123
Hin6I GCGC 3 cut(s) 5, 63, 65
HinP1I GCGC 3 cut(s) 5, 63, 65
HincII GTYRAC 1 cut(s) 963
HindII GTYRAC 1 cut(s) 963
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 4 cut(s) 174, 434, 825, 1186
HpaII CCGG 3 cut(s) 98, 206, 249
HphI GGTGA 4 cut(s) 118, 746, 986, 1071
Hpy166II GTNNAC 1 cut(s) 963
Hpy188I TCNGA 7 cut(s) 337, 646, 837, 1004, 1037, 1068, 1110
Hpy188III TCNNGA 6 cut(s) 431, 484, 530, 763, 773, 980
Hpy8I GTNNAC 1 cut(s) 963
HpyAV CCTTC 3 cut(s) 145, 651, 709
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 9 cut(s) 370, 392, 407, 554, 611, 752, 812, 904, 1274
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 1122
HpyF3I CTNAG 2 cut(s) 537, 851
HpySE526I ACGT 1 cut(s) 421
Hsp92I GRCGYC 1 cut(s) 123
HspAI GCGC 3 cut(s) 5, 63, 65
Kzo9I GATC 9 cut(s) 68, 109, 145, 637, 663, 976, 1024, 1076, 1153
LmnI GCTCC 8 cut(s) 33, 41, 47, 106, 235, 586, 1005, 1093
Lsp1109I GCAGC 3 cut(s) 374, 916, 919
LweI GCATC 3 cut(s) 481, 739, 836
MaeI CTAG 1 cut(s) 729
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 5 cut(s) 124, 734, 929, 1216, 1261
MalI GATC 9 cut(s) 70, 111, 147, 639, 665, 978, 1026, 1078, 1155
MbiI CCGCTC 1 cut(s) 238
MboI GATC 9 cut(s) 68, 109, 145, 637, 663, 976, 1024, 1076, 1153
MboII GAAGA 4 cut(s) 263, 314, 1000, 1055
MflI RGATCY 2 cut(s) 109, 663
MhlI GDGCHC 3 cut(s) 38, 619, 1098
MluCI AATT 5 cut(s) 254, 789, 795, 991, 1070
MlyI GAGTC 3 cut(s) 183, 819, 1180
MmeI TCCRAC 3 cut(s) 118, 151, 1213
MnlI CCTC 8 cut(s) 24, 149, 234, 285, 513, 640, 769, 859
Mph1103I ATGCAT 1 cut(s) 613
MroXI GAANNNNTTC 2 cut(s) 270, 1062
MseI TTAA 1 cut(s) 1011
MslI CAYNNNNRTG 1 cut(s) 612
MspI CCGG 3 cut(s) 98, 206, 249
MspR9I CCNGG 2 cut(s) 79, 497
Mva1269I GAATGC 3 cut(s) 224, 583, 1044
MvaI CCWGG 2 cut(s) 79, 497
MvnI CGCG 2 cut(s) 65, 67
MwoI GCNNNNNNNGC 2 cut(s) 140, 1122
NdeII GATC 9 cut(s) 68, 109, 145, 637, 663, 976, 1024, 1076, 1153
NlaIV GGNNCC 3 cut(s) 102, 501, 1001
NmeAIII GCCGAG 1 cut(s) 99
NmuCI GTSAC 2 cut(s) 124, 734
NsiI ATGCAT 1 cut(s) 613
NspI RCATGY 3 cut(s) 396, 615, 1120
PaeR7I CTCGAG 1 cut(s) 773
PauI GCGCGC 1 cut(s) 63
PcsI WCGNNNNNNNCGW 2 cut(s) 126, 1195
PctI GAATGC 3 cut(s) 224, 583, 1044
PdmI GAANNNNTTC 2 cut(s) 270, 1062
PfeI GAWTC 1 cut(s) 434
PflMI CCANNNNNTGG 1 cut(s) 78
PkrI GCNGC 3 cut(s) 364, 906, 909
PleI GAGTC 3 cut(s) 182, 819, 1180
PpsI GAGTC 3 cut(s) 182, 819, 1180
PpuMI RGGWCCY 1 cut(s) 499
Psp124BI GAGCTC 1 cut(s) 38
Psp1406I AACGTT 1 cut(s) 421
Psp5II RGGWCCY 1 cut(s) 499
Psp6I CCWGG 2 cut(s) 77, 495
PspEI GGTNACC 1 cut(s) 734
PspGI CCWGG 2 cut(s) 77, 495
PspN4I GGNNCC 3 cut(s) 102, 501, 1001
PspPI GGNCC 3 cut(s) 465, 499, 947
PspPPI RGGWCCY 1 cut(s) 499
PsuI RGATCY 2 cut(s) 109, 663
PteI GCGCGC 1 cut(s) 63
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 612
SacI GAGCTC 1 cut(s) 38
SaqAI TTAA 1 cut(s) 1011
SatI GCNGC 3 cut(s) 363, 905, 908
Sau3AI GATC 9 cut(s) 68, 109, 145, 637, 663, 976, 1024, 1076, 1153
Sau96I GGNCC 3 cut(s) 465, 499, 947
SchI GAGTC 3 cut(s) 183, 819, 1180
ScrFI CCNGG 2 cut(s) 79, 497
SduI GDGCHC 3 cut(s) 38, 619, 1098
SfaNI GCATC 3 cut(s) 481, 739, 836
SfcI CTRYAG 1 cut(s) 1126
Sfr274I CTCGAG 1 cut(s) 773
SinI GGWCC 2 cut(s) 499, 947
SlaI CTCGAG 1 cut(s) 773
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
Sse9I AATT 5 cut(s) 254, 789, 795, 991, 1070
SsiI CCGC 6 cut(s) 48, 85, 233, 238, 1131, 1211
SspMI CTAG 1 cut(s) 729
SstI GAGCTC 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 77, 495
StyI CCWWGG 1 cut(s) 970
TaaI ACNGT 1 cut(s) 188
TaiI ACGT 1 cut(s) 424
TaqI TCGA 2 cut(s) 774, 1198
TasI AATT 5 cut(s) 254, 789, 795, 991, 1070
TfiI GAWTC 1 cut(s) 434
Tru1I TTAA 1 cut(s) 1011
Tru9I TTAA 1 cut(s) 1011
TscAI CASTG 4 cut(s) 292, 372, 459, 634
TseFI GTSAC 2 cut(s) 124, 734
TseI GCWGC 3 cut(s) 362, 904, 907
Tsp45I GTSAC 2 cut(s) 124, 734
TspDTI ATGAA 5 cut(s) 596, 885, 932, 1163, 1272
TspGWI ACGGA 1 cut(s) 43
TspRI CASTG 4 cut(s) 292, 372, 459, 634
Van91I CCANNNNNTGG 1 cut(s) 78
VpaK11BI GGWCC 2 cut(s) 499, 947
XapI RAATTY 2 cut(s) 795, 991
XceI RCATGY 3 cut(s) 396, 615, 1120
XcmI CCANNNNNNNNNTGG 1 cut(s) 459
XhoI CTCGAG 1 cut(s) 773
XmnI GAANNNNTTC 2 cut(s) 270, 1062
XspI CTAG 1 cut(s) 729
Zsp2I ATGCAT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.