Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010223

Physical Location & Seq

Genomic Coordinates Reverse (-)

52575465 .. 52581507

Gene Structure 6043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG370000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGAATATCTTCCTATGGGGGGCAGTGTGAAGATGGTGGAAGAAACATTGAAGCTGGCCTATGGAGAGACTTCTGAATTTCTCAAAGATAAAAGGATAGCAGCAGTGCAATCTCTCTCTGGGACTGGTGCATGTCGTCTTTTTGCTGACTTTCAAAAACGTTTTCGTCCAGATTCTAATATCTATATTCCAGTGCCAACATGGGCCAACCACCATAACATCTGGAGAGATGCCCAGGTCCCTCAAAGGACTTTCCATTACTATCATCCAGAGACTAAGGGTTTGGACTTTGCAGGACTGATTGATGACATAAAGAATGCTCCAAGTGGCTCATTCTTTCTACTTCATGCATGTGCTCACAATCCCACTGGAGTTGATCCTTCGGAGGAACAATGGAAAGAGATCTCATACCAAATCAAGGGTAAAGGTCATTTTGCCTTCTTTGACATGGCATATCAAGGTTTTGCTAGTGGTAACCCAGAGAGAGATGCAAAAGCCATCAGGATTTTTCTCGAGGATGGTCATCTAATTGGAATTTCTCAATCTTATGCAAAAAATATGGGACTCTATGGTCAGAGAGTAGGATGCCTTAGCTTGCTTTGTGAGGATGAAAAACAAGCTGTGGCTGTAAAAAGTCAGTTGCAGCAGCTTGCCAGACCCATGTATAGTAACCCACCTGTTCATGGACCACTTATAGTGTCAACTATCCTTGGTGATCCAGACTTGAAGAATTTGTGGCTCCGAGAAGTTAAGGGCATGGCAGATCGCATAATCGGAATGCGAACTGCTCTACGAGAAAACCTTGAGAAATTGGGATCACCCTTATCTTGGGAGCACATAACAAATCAGATTGGCATGTTTTGCTATAGCGGAATGACACCTGAACAGGTTGATCGTTTGACAAATGAGTTTCATATATATTTGACTCGCAATGGTCGAATAAGTATGGCGGGTGTTACAACGGGCAATGTTGGATATCTGGCAAATGCTATACATGAAGTAACAAAATCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004069 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006103 GO:0006520 GO:0006531 GO:0006536 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009064 GO:0009066 GO:0009987 GO:0010035 GO:0010038 GO:0016740 GO:0016769 GO:0019752 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00270 ko00330 ko00350 ko00360 ko00400 ko00710 ko00950 ko00960 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04975 map00220 map00250 map00270 map00330 map00350 map00360 map00400 map00710 map00950 map00960 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04975

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

338

Amino Acids

37.86

Weight (kDa)

6.87

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	2 - 331	2.6e-83	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30970 AT2G30970
fragaria_vesca	FvH4_6g27650 FvH4_6g27650 FvH4_6g27650 FvH4_6g27650
malus_domestica	MD17G1264900.v1.1
prunus_persica	Prupe.3G115000_v2.0.a1 Prupe.3G115000_v2.0.a1 Prupe.3G115000_v2.0.a1
pyrus_communis	pycom17g26460
rosa_chinensis	RchiOBHm_Chr2g0130551
rosa_laevigata	RLG00000019136
rosa_multiflora	Rmu_sc0001336.1_g000028
rosa_roxburghii	Rroxscaffold_2G00113960
rosa_rugosa	Rorug02G0292000
rosa_samantha	Rh2AG343500 Rh2BG352000 Rh2CG330700 Rh2DG370000
rosa_wichuraiana	Rw2G027570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	570
AciI	CCGC	2 cut(s)	870, 950
AclI	AACGTT	1 cut(s)	160
AclWI	GGATC	3 cut(s)	371, 710, 823
AcsI	RAATTY	3 cut(s)	77, 534, 730
AfiI	CCNNNNNNNGG	4 cut(s)	20, 418, 683, 828
AgsI	TTSAA	3 cut(s)	52, 155, 727
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	4 cut(s)	55, 594, 620, 649
AluI	AGCT	4 cut(s)	55, 594, 620, 649
Alw21I	GWGCWC	2 cut(s)	358, 837
Alw26I	GTCTC	2 cut(s)	62, 266
AlwI	GGATC	3 cut(s)	371, 710, 823
Ama87I	CYCGRG	1 cut(s)	512
AoxI	GGCC	2 cut(s)	57, 204
ApeKI	GCWGC	3 cut(s)	101, 643, 646
ApoI	RAATTY	3 cut(s)	77, 534, 730
ArsI	GACNNNNNNTTYG	2 cut(s)	265, 297
Asp700I	GAANNNNTTC	1 cut(s)	9
AspS9I	GGNCC	3 cut(s)	204, 238, 686
AsuHPI	GGTGA	2 cut(s)	725, 810
AvaI	CYCGRG	1 cut(s)	512
AvaII	GGWCC	2 cut(s)	238, 686
Bbv12I	GWGCWC	2 cut(s)	358, 837
BbvI	GCAGC	3 cut(s)	113, 655, 658
BccI	CCATC	3 cut(s)	28, 506, 512
BciT130I	CCWGG	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	62, 266
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	865
BglII	AGATCT	1 cut(s)	402
BisI	GCNGC	3 cut(s)	102, 644, 647
BlsI	GCNGC	3 cut(s)	103, 645, 648
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	2 cut(s)	238, 686
BmeT110I	CYCGRG	1 cut(s)	512
BmgT120I	GGNCC	3 cut(s)	204, 238, 686
BmiI	GGNNCC	2 cut(s)	240, 740
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	3 cut(s)	220, 478, 575
BpmI	CTGGAG	2 cut(s)	244, 390
Bpu10I	CCTNAGC	1 cut(s)	590
BpuEI	CTTGAG	1 cut(s)	824
BsaBI	GATNNNNATC	1 cut(s)	522
BsaJI	CCNNGG	2 cut(s)	234, 709
Bsc4I	CCNNNNNNNGG	4 cut(s)	20, 418, 683, 828
Bse1I	ACTGG	3 cut(s)	130, 191, 373
Bse3DI	GCAATG	2 cut(s)	937, 973
Bse8I	GATNNNNATC	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	234, 709
BseGI	GGATG	4 cut(s)	265, 523, 590, 613
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	4 cut(s)	20, 418, 683, 828
BseMI	GCAATG	2 cut(s)	937, 973
BseNI	ACTGG	3 cut(s)	130, 191, 373
BseXI	GCAGC	3 cut(s)	113, 655, 658
BshFI	GGCC	2 cut(s)	59, 206
BsiHKAI	GWGCWC	2 cut(s)	358, 837
BsiHKCI	CYCGRG	1 cut(s)	512
BslFI	GGGAC	3 cut(s)	136, 224, 576
BslI	CCNNNNNNNGG	4 cut(s)	20, 418, 683, 828
BsmAI	GTCTC	2 cut(s)	62, 266
BsmFI	GGGAC	3 cut(s)	136, 224, 576
BsmI	GAATGC	2 cut(s)	322, 783
BsnI	GGCC	2 cut(s)	59, 206
BsoBI	CYCGRG	1 cut(s)	512
Bsp1286I	GDGCHC	2 cut(s)	358, 837
Bsp143I	GATC	6 cut(s)	376, 402, 715, 763, 815, 892
BspACI	CCGC	2 cut(s)	870, 950
BspANI	GGCC	2 cut(s)	59, 206
BspLI	GGNNCC	2 cut(s)	240, 740
BspPI	GGATC	3 cut(s)	371, 710, 823
BsrDI	GCAATG	2 cut(s)	937, 973
BsrI	ACTGG	3 cut(s)	130, 191, 373
BssECI	CCNNGG	2 cut(s)	234, 709
BssMI	GATC	6 cut(s)	376, 402, 715, 763, 815, 892
BssT1I	CCWWGG	1 cut(s)	709
Bst2UI	CCWGG	1 cut(s)	236
BstAPI	GCANNNNNTGC	1 cut(s)	861
BstC8I	GCNNGC	3 cut(s)	57, 596, 651
BstDEI	CTNAG	2 cut(s)	276, 590
BstEII	GGTNACC	1 cut(s)	473
BstF5I	GGATG	4 cut(s)	265, 523, 590, 613
BstKTI	GATC	6 cut(s)	379, 405, 718, 766, 818, 895
BstMAI	GTCTC	2 cut(s)	62, 266
BstMBI	GATC	6 cut(s)	376, 402, 715, 763, 815, 892
BstMWI	GCNNNNNNNGC	1 cut(s)	861
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	3 cut(s)	135, 354, 859
BstPI	GGTNACC	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	234
BstSFI	CTRYAG	1 cut(s)	865
BstV1I	GCAGC	3 cut(s)	113, 655, 658
BstX2I	RGATCY	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	59, 206
BtsCI	GGATG	4 cut(s)	265, 523, 590, 613
BtsI	GCAGTG	2 cut(s)	31, 111
BtsIMutI	CAGTG	4 cut(s)	31, 111, 198, 366
Cac8I	GCNNGC	3 cut(s)	57, 596, 651
Cfr13I	GGNCC	3 cut(s)	204, 238, 686
CspCI	CAANNNNNGTGG	2 cut(s)	355, 390
DdeI	CTNAG	2 cut(s)	276, 590
DpnI	GATC	6 cut(s)	378, 404, 717, 765, 817, 894
DpnII	GATC	6 cut(s)	376, 402, 715, 763, 815, 892
DrdI	GACNNNNNNGTC	1 cut(s)	570
DseDI	GACNNNNNNGTC	1 cut(s)	570
Eco130I	CCWWGG	1 cut(s)	709
Eco32I	GATATC	1 cut(s)	977
Eco47I	GGWCC	2 cut(s)	238, 686
Eco88I	CYCGRG	1 cut(s)	512
Eco91I	GGTNACC	1 cut(s)	473
EcoO109I	RGGNCCY	1 cut(s)	238
EcoO65I	GGTNACC	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	234
EcoRV	GATATC	1 cut(s)	977
EcoT14I	CCWWGG	1 cut(s)	709
EcoT22I	ATGCAT	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	709
FaqI	GGGAC	3 cut(s)	136, 224, 576
FauI	CCCGC	1 cut(s)	943
Fnu4HI	GCNGC	3 cut(s)	102, 644, 647
FokI	GGATG	4 cut(s)	252, 530, 597, 620
Fsp4HI	GCNGC	3 cut(s)	102, 644, 647
FspBI	CTAG	1 cut(s)	468
GluI	GCNGC	3 cut(s)	102, 644, 647
GsuI	CTGGAG	2 cut(s)	244, 390
HaeIII	GGCC	2 cut(s)	59, 206
HincII	GTYRAC	1 cut(s)	702
HindII	GTYRAC	1 cut(s)	702
HinfI	GANTC	3 cut(s)	173, 564, 925
HphI	GGTGA	2 cut(s)	725, 810
Hpy166II	GTNNAC	1 cut(s)	702
Hpy188I	TCNGA	6 cut(s)	76, 385, 576, 743, 776, 849
Hpy188III	TCNNGA	6 cut(s)	170, 223, 269, 502, 512, 719
Hpy8I	GTNNAC	1 cut(s)	702
HpyAV	CCTTC	2 cut(s)	390, 448
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	8 cut(s)	109, 131, 293, 350, 491, 551, 643, 1013
HpyF10VI	GCNNNNNNNGC	1 cut(s)	861
HpyF3I	CTNAG	2 cut(s)	276, 590
HpySE526I	ACGT	1 cut(s)	160
Kzo9I	GATC	6 cut(s)	376, 402, 715, 763, 815, 892
LmnI	GCTCC	3 cut(s)	325, 744, 832
Lsp1109I	GCAGC	3 cut(s)	113, 655, 658
LweI	GCATC	3 cut(s)	220, 478, 575
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	4 cut(s)	473, 668, 955, 1000
MalI	GATC	6 cut(s)	378, 404, 717, 765, 817, 894
MboI	GATC	6 cut(s)	376, 402, 715, 763, 815, 892
MboII	GAAGA	3 cut(s)	43, 53, 739
MflI	RGATCY	1 cut(s)	402
MhlI	GDGCHC	2 cut(s)	358, 837
MluCI	AATT	5 cut(s)	77, 528, 534, 730, 809
MlyI	GAGTC	2 cut(s)	558, 919
MmeI	TCCRAC	1 cut(s)	952
MnlI	CCTC	4 cut(s)	252, 379, 508, 598
Mph1103I	ATGCAT	1 cut(s)	352
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	1 cut(s)	750
MslI	CAYNNNNRTG	1 cut(s)	351
MspR9I	CCNGG	1 cut(s)	236
Mva1269I	GAATGC	2 cut(s)	322, 783
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	861
NdeII	GATC	6 cut(s)	376, 402, 715, 763, 815, 892
NlaIV	GGNNCC	2 cut(s)	240, 740
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	3 cut(s)	135, 354, 859
PaeR7I	CTCGAG	1 cut(s)	512
PcsI	WCGNNNNNNNCGW	1 cut(s)	934
PctI	GAATGC	2 cut(s)	322, 783
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	3 cut(s)	103, 645, 648
PleI	GAGTC	2 cut(s)	558, 919
PpsI	GAGTC	2 cut(s)	558, 919
PpuMI	RGGWCCY	1 cut(s)	238
Psp1406I	AACGTT	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	234
PspEI	GGTNACC	1 cut(s)	473
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	240, 740
PspPI	GGNCC	3 cut(s)	204, 238, 686
PspPPI	RGGWCCY	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	402
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	3 cut(s)	102, 644, 647
Sau3AI	GATC	6 cut(s)	376, 402, 715, 763, 815, 892
Sau96I	GGNCC	3 cut(s)	204, 238, 686
SchI	GAGTC	2 cut(s)	558, 919
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	2 cut(s)	358, 837
SfaNI	GCATC	3 cut(s)	220, 478, 575
SfcI	CTRYAG	1 cut(s)	865
Sfr274I	CTCGAG	1 cut(s)	512
SinI	GGWCC	2 cut(s)	238, 686
SlaI	CTCGAG	1 cut(s)	512
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	2 cut(s)	512, 803
SmoI	CTYRAG	2 cut(s)	512, 803
Sse9I	AATT	5 cut(s)	77, 528, 534, 730, 809
SsiI	CCGC	2 cut(s)	870, 950
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	709
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	2 cut(s)	513, 937
TasI	AATT	5 cut(s)	77, 528, 534, 730, 809
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TscAI	CASTG	4 cut(s)	31, 111, 198, 373
TseI	GCWGC	3 cut(s)	101, 643, 646
TspDTI	ATGAA	5 cut(s)	335, 624, 671, 902, 1011
TspRI	CASTG	4 cut(s)	31, 111, 198, 373
VpaK11BI	GGWCC	2 cut(s)	238, 686
XapI	RAATTY	3 cut(s)	77, 534, 730
XceI	RCATGY	3 cut(s)	135, 354, 859
XcmI	CCANNNNNNNNNTGG	1 cut(s)	198
XhoI	CTCGAG	1 cut(s)	512
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	468
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.