Rroxscaffold_2G00113960

Aspartate aminotransferase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
39775001 .. 39780725
5725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00113960.1

Sequence Viewer

Length: 1275 bp
ATGGCGCTCTCCACCAAACTTTTTCAACGGAGGAGCTTCAGCTCCACCGCAGTCTTGGGCGCGCGATCCATGTCCTGGTGGAGAAGTGTCCAACCGGCTCCCAAAGATCCCATTCTCGGCGTCACCGAAGCCTTCCTCGCCGATCCCAGTCCCAACAAAGTCAATGTTGGAGTCGGTGCGTACCGTGATGACAATGGAAAGCCGGTTGTTCTGGAATGCGTTAGAGAAGCGGAGCGGAGGGTTGCCGGAAAATTAAACATGGAATATCTTCCTATGGGGGGCAGTGTGAAGATGGTGGAAGAAACATTGAAGCTGGCCTATGGAGAGACTTCTGAATTTCTCAAAGATAAAAGGATAGCAGCAGTGCAATCTCTTTCTGGGACTGGTGCATGTCGTCTTTTTGCAGACTTTCAAAAACGTTTTCGTCCAGATTCAAATATCTATATTCCAGTGCCAACATGGGCCAACCACCATAACATCTGGAGAGATGCCCAGGTCCCTCAAAGGACTTTCCATTACTATCATCCAGAGACTAAGGGTTTGGACTTTGCAGGACTGATTGATGACATAAAGAATGCTCCAAGTGGCTCATTCTTTCTACTTCATGCATGTGCTCACAATCCCACTGGAGTTGATCCTTCAGAGGAACAATGGAAAGAGATCTCATACCAAATCAAGGGTAAAGGTCATTTTGCCTTCTTTGACATGGCATATCAAGGTTTTGCTAGTGGTAACCCAGAGAGAGATGCAAAAGCCATCAGGATTTTTCTCGAGGATGGTCATCTAATTGGAATTTCTCAATCTTATGCAAAAAATATGGGACTCTATGGTCAGAGAGTAGGATGCCTTAGCTTGCTTTGTGAGGATGAAAAACAAGCTGTGGCTGTAAAAAGTCAGTTGCAGCAGCTTGCCAGACCCATGTATAGTAACCCACCCGTTCATGGACCGCTTATAGTGTCAACTATCCTTGGTGATCCAGACTTGAAGAATTTGTGGCTCCGAGAAGTTAAGGGCATGGCAGATCGCATAATCGGAATGCGAACTGCTCTACGAGAAAACCTTGAGAAATTGGGATCACCCTTATCTTGGGAGCACATAACAAATCAGATTGGCATGTTTTGCTATAGCGGAATGACACCTGAACAAGTTGATCGTTTGACAAATGAGTTTCATATATATTTGACTCGCAATGGTCGAATAAGTATGGCGGGTGTTACAACGGGCAATGTTGGATATCTGGCAAATGCTATACATGAAGTAACAAAATCTGCATAG

Protein Analysis

424

Amino Acids

47.24

Weight (kDa)

8.59

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 52 - 417 9.2e-91 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 828
AccB7I CCANNNNNTGG 1 cut(s) 75
AccBSI CCGCTC 1 cut(s) 235
AccII CGCG 2 cut(s) 62, 64
AciI CCGC 6 cut(s) 48, 230, 235, 947, 1128, 1208
AclI AACGTT 1 cut(s) 418
AclWI GGATC 6 cut(s) 60, 101, 137, 629, 968, 1081
AcsI RAATTY 3 cut(s) 335, 792, 988
AcuI CTGAAG 2 cut(s) 22, 624
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 6 cut(s) 75, 116, 278, 676, 941, 1086
AgsI TTSAA 5 cut(s) 26, 310, 413, 435, 985
AjnI CCWGG 2 cut(s) 74, 492
AluBI AGCT 6 cut(s) 36, 42, 313, 852, 878, 907
AluI AGCT 6 cut(s) 36, 42, 313, 852, 878, 907
Alw21I GWGCWC 2 cut(s) 616, 1095
Alw26I GTCTC 2 cut(s) 320, 524
AlwI GGATC 6 cut(s) 60, 101, 137, 629, 968, 1081
Ama87I CYCGRG 1 cut(s) 770
AoxI GGCC 2 cut(s) 315, 462
ApeKI GCWGC 3 cut(s) 359, 901, 904
ApoI RAATTY 3 cut(s) 335, 792, 988
ArsI GACNNNNNNTTYG 2 cut(s) 523, 555
Asp700I GAANNNNTTC 1 cut(s) 267
AspLEI GCGC 3 cut(s) 7, 62, 64
AspS9I GGNCC 3 cut(s) 462, 496, 944
AsuHPI GGTGA 3 cut(s) 115, 983, 1068
AvaI CYCGRG 1 cut(s) 770
AvaII GGWCC 2 cut(s) 496, 944
Bbv12I GWGCWC 2 cut(s) 616, 1095
BbvI GCAGC 3 cut(s) 371, 913, 916
BccI CCATC 3 cut(s) 286, 764, 770
BciT130I CCWGG 2 cut(s) 76, 494
BcoDI GTCTC 2 cut(s) 320, 524
BfaI CTAG 1 cut(s) 726
BfmI CTRYAG 1 cut(s) 1123
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 1 cut(s) 660
BisI GCNGC 3 cut(s) 360, 902, 905
BlsI GCNGC 3 cut(s) 361, 903, 906
Bme1390I CCNGG 2 cut(s) 76, 494
Bme18I GGWCC 2 cut(s) 496, 944
BmeT110I CYCGRG 1 cut(s) 770
BmgT120I GGNCC 3 cut(s) 462, 496, 944
BmiI GGNNCC 3 cut(s) 99, 498, 998
BmrFI CCNGG 2 cut(s) 76, 494
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 3 cut(s) 478, 736, 833
BmuI ACTGGG 1 cut(s) 141
BpmI CTGGAG 2 cut(s) 502, 648
Bpu10I CCTNAGC 1 cut(s) 848
BpuEI CTTGAG 1 cut(s) 1082
BsaBI GATNNNNATC 1 cut(s) 780
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 492, 967
Bsc4I CCNNNNNNNGG 6 cut(s) 75, 116, 278, 676, 941, 1086
Bse118I RCCGGY 2 cut(s) 94, 202
Bse1I ACTGG 4 cut(s) 147, 388, 449, 631
Bse3DI GCAATG 2 cut(s) 1195, 1231
Bse8I GATNNNNATC 1 cut(s) 780
BseBI CCWGG 2 cut(s) 76, 494
BseDI CCNNGG 2 cut(s) 492, 967
BseGI GGATG 4 cut(s) 523, 781, 848, 871
BseJI GATNNNNATC 1 cut(s) 780
BseLI CCNNNNNNNGG 6 cut(s) 75, 116, 278, 676, 941, 1086
BseMI GCAATG 2 cut(s) 1195, 1231
BseNI ACTGG 4 cut(s) 147, 388, 449, 631
BsePI GCGCGC 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 46
BseXI GCAGC 3 cut(s) 371, 913, 916
Bsh1236I CGCG 2 cut(s) 62, 64
BshFI GGCC 2 cut(s) 317, 464
BsiHKAI GWGCWC 2 cut(s) 616, 1095
BsiHKCI CYCGRG 1 cut(s) 770
BsiSI CCGG 3 cut(s) 95, 203, 246
BslFI GGGAC 4 cut(s) 135, 394, 482, 834
BslI CCNNNNNNNGG 6 cut(s) 75, 116, 278, 676, 941, 1086
BsmAI GTCTC 2 cut(s) 320, 524
BsmFI GGGAC 4 cut(s) 135, 394, 482, 834
BsmI GAATGC 3 cut(s) 221, 580, 1041
BsnI GGCC 2 cut(s) 317, 464
BsoBI CYCGRG 1 cut(s) 770
Bsp1286I GDGCHC 2 cut(s) 616, 1095
Bsp143I GATC 9 cut(s) 65, 106, 142, 634, 660, 973, 1021, 1073, 1150
BspACI CCGC 6 cut(s) 48, 230, 235, 947, 1128, 1208
BspANI GGCC 2 cut(s) 317, 464
BspFNI CGCG 2 cut(s) 62, 64
BspLI GGNNCC 3 cut(s) 99, 498, 998
BspPI GGATC 6 cut(s) 60, 101, 137, 629, 968, 1081
BsrBI CCGCTC 1 cut(s) 235
BsrDI GCAATG 2 cut(s) 1195, 1231
BsrFI RCCGGY 2 cut(s) 94, 202
BsrI ACTGG 4 cut(s) 147, 388, 449, 631
BssAI RCCGGY 2 cut(s) 94, 202
BssECI CCNNGG 2 cut(s) 492, 967
BssHII GCGCGC 1 cut(s) 60
BssMI GATC 9 cut(s) 65, 106, 142, 634, 660, 973, 1021, 1073, 1150
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 967
Bst2UI CCWGG 2 cut(s) 76, 494
Bst4CI ACNGT 1 cut(s) 185
BstACI GRCGYC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 1119
BstC8I GCNNGC 4 cut(s) 62, 315, 854, 909
BstDEI CTNAG 2 cut(s) 534, 848
BstEII GGTNACC 1 cut(s) 731
BstF5I GGATG 4 cut(s) 523, 781, 848, 871
BstFNI CGCG 2 cut(s) 62, 64
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 3 cut(s) 7, 62, 64
BstKTI GATC 9 cut(s) 68, 109, 145, 637, 663, 976, 1024, 1076, 1153
BstMAI GTCTC 2 cut(s) 320, 524
BstMBI GATC 9 cut(s) 65, 106, 142, 634, 660, 973, 1021, 1073, 1150
BstMWI GCNNNNNNNGC 2 cut(s) 137, 1119
BstNI CCWGG 2 cut(s) 76, 494
BstNSI RCATGY 3 cut(s) 393, 612, 1117
BstPI GGTNACC 1 cut(s) 731
BstSCI CCNGG 2 cut(s) 74, 492
BstSFI CTRYAG 1 cut(s) 1123
BstUI CGCG 2 cut(s) 62, 64
BstV1I GCAGC 3 cut(s) 371, 913, 916
BstX2I RGATCY 2 cut(s) 106, 660
BstYI RGATCY 2 cut(s) 106, 660
BsuRI GGCC 2 cut(s) 317, 464
BtsCI GGATG 4 cut(s) 523, 781, 848, 871
BtsI GCAGTG 2 cut(s) 289, 369
BtsIMutI CAGTG 4 cut(s) 289, 369, 456, 624
Cac8I GCNNGC 4 cut(s) 62, 315, 854, 909
CfoI GCGC 3 cut(s) 7, 62, 64
Cfr10I RCCGGY 2 cut(s) 94, 202
Cfr13I GGNCC 3 cut(s) 462, 496, 944
CseI GACGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 181
CspCI CAANNNNNGTGG 2 cut(s) 613, 648
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 2 cut(s) 534, 848
DpnI GATC 9 cut(s) 67, 108, 144, 636, 662, 975, 1023, 1075, 1152
DpnII GATC 9 cut(s) 65, 106, 142, 634, 660, 973, 1021, 1073, 1150
DrdI GACNNNNNNGTC 1 cut(s) 828
DseDI GACNNNNNNGTC 1 cut(s) 828
Eco130I CCWWGG 1 cut(s) 967
Eco32I GATATC 1 cut(s) 1235
Eco47I GGWCC 2 cut(s) 496, 944
Eco57I CTGAAG 2 cut(s) 22, 624
Eco88I CYCGRG 1 cut(s) 770
Eco91I GGTNACC 1 cut(s) 731
EcoO109I RGGNCCY 1 cut(s) 496
EcoO65I GGTNACC 1 cut(s) 731
EcoRII CCWGG 2 cut(s) 74, 492
EcoRV GATATC 1 cut(s) 1235
EcoT14I CCWWGG 1 cut(s) 967
EcoT22I ATGCAT 1 cut(s) 610
ErhI CCWWGG 1 cut(s) 967
FaqI GGGAC 4 cut(s) 135, 394, 482, 834
FauI CCCGC 1 cut(s) 1201
Fnu4HI GCNGC 3 cut(s) 360, 902, 905
FokI GGATG 4 cut(s) 510, 788, 855, 878
Fsp4HI GCNGC 3 cut(s) 360, 902, 905
FspBI CTAG 1 cut(s) 726
GlaI GCGC 3 cut(s) 6, 61, 63
GluI GCNGC 3 cut(s) 360, 902, 905
GsuI CTGGAG 2 cut(s) 502, 648
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 317, 464
HapII CCGG 3 cut(s) 95, 203, 246
HgaI GACGC 1 cut(s) 109
HhaI GCGC 3 cut(s) 7, 62, 64
Hin1I GRCGYC 1 cut(s) 120
Hin6I GCGC 3 cut(s) 5, 60, 62
HinP1I GCGC 3 cut(s) 5, 60, 62
HincII GTYRAC 1 cut(s) 960
HindII GTYRAC 1 cut(s) 960
HinfI GANTC 4 cut(s) 171, 431, 822, 1183
HpaII CCGG 3 cut(s) 95, 203, 246
HphI GGTGA 3 cut(s) 115, 983, 1068
Hpy166II GTNNAC 1 cut(s) 960
Hpy188I TCNGA 6 cut(s) 334, 643, 834, 1001, 1034, 1107
Hpy188III TCNNGA 7 cut(s) 212, 428, 481, 527, 760, 770, 977
Hpy8I GTNNAC 1 cut(s) 960
HpyAV CCTTC 3 cut(s) 142, 648, 706
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 9 cut(s) 367, 389, 404, 551, 608, 749, 809, 901, 1271
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 1119
HpyF3I CTNAG 2 cut(s) 534, 848
HpySE526I ACGT 1 cut(s) 418
Hsp92I GRCGYC 1 cut(s) 120
HspAI GCGC 3 cut(s) 5, 60, 62
Kzo9I GATC 9 cut(s) 65, 106, 142, 634, 660, 973, 1021, 1073, 1150
LmnI GCTCC 7 cut(s) 33, 47, 103, 232, 583, 1002, 1090
Lsp1109I GCAGC 3 cut(s) 371, 913, 916
LweI GCATC 3 cut(s) 478, 736, 833
MaeI CTAG 1 cut(s) 726
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 5 cut(s) 121, 731, 926, 1213, 1258
MalI GATC 9 cut(s) 67, 108, 144, 636, 662, 975, 1023, 1075, 1152
MbiI CCGCTC 1 cut(s) 235
MboI GATC 9 cut(s) 65, 106, 142, 634, 660, 973, 1021, 1073, 1150
MboII GAAGA 4 cut(s) 260, 301, 311, 997
MflI RGATCY 2 cut(s) 106, 660
MhlI GDGCHC 2 cut(s) 616, 1095
MluCI AATT 6 cut(s) 251, 335, 786, 792, 988, 1067
MlyI GAGTC 3 cut(s) 180, 816, 1177
MmeI TCCRAC 3 cut(s) 115, 148, 1210
MnlI CCTC 7 cut(s) 24, 146, 231, 510, 637, 766, 856
Mph1103I ATGCAT 1 cut(s) 610
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 2 cut(s) 254, 1008
MslI CAYNNNNRTG 1 cut(s) 609
MspI CCGG 3 cut(s) 95, 203, 246
MspR9I CCNGG 2 cut(s) 76, 494
Mva1269I GAATGC 3 cut(s) 221, 580, 1041
MvaI CCWGG 2 cut(s) 76, 494
MvnI CGCG 2 cut(s) 62, 64
MwoI GCNNNNNNNGC 2 cut(s) 137, 1119
NdeII GATC 9 cut(s) 65, 106, 142, 634, 660, 973, 1021, 1073, 1150
NlaIV GGNNCC 3 cut(s) 99, 498, 998
NmeAIII GCCGAG 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 610
NspI RCATGY 3 cut(s) 393, 612, 1117
PaeR7I CTCGAG 1 cut(s) 770
PauI GCGCGC 1 cut(s) 60
PcsI WCGNNNNNNNCGW 2 cut(s) 123, 1192
PctI GAATGC 3 cut(s) 221, 580, 1041
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 1 cut(s) 431
PflMI CCANNNNNTGG 1 cut(s) 75
PkrI GCNGC 3 cut(s) 361, 903, 906
PleI GAGTC 3 cut(s) 179, 816, 1177
PpsI GAGTC 3 cut(s) 179, 816, 1177
PpuMI RGGWCCY 1 cut(s) 496
Psp1406I AACGTT 1 cut(s) 418
Psp5II RGGWCCY 1 cut(s) 496
Psp6I CCWGG 2 cut(s) 74, 492
PspEI GGTNACC 1 cut(s) 731
PspGI CCWGG 2 cut(s) 74, 492
PspN4I GGNNCC 3 cut(s) 99, 498, 998
PspPI GGNCC 3 cut(s) 462, 496, 944
PspPPI RGGWCCY 1 cut(s) 496
PsuI RGATCY 2 cut(s) 106, 660
PteI GCGCGC 1 cut(s) 60
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 609
SaqAI TTAA 2 cut(s) 254, 1008
SatI GCNGC 3 cut(s) 360, 902, 905
Sau3AI GATC 9 cut(s) 65, 106, 142, 634, 660, 973, 1021, 1073, 1150
Sau96I GGNCC 3 cut(s) 462, 496, 944
SchI GAGTC 3 cut(s) 180, 816, 1177
ScrFI CCNGG 2 cut(s) 76, 494
SduI GDGCHC 2 cut(s) 616, 1095
SfaNI GCATC 3 cut(s) 478, 736, 833
SfcI CTRYAG 1 cut(s) 1123
Sfr274I CTCGAG 1 cut(s) 770
SinI GGWCC 2 cut(s) 496, 944
SlaI CTCGAG 1 cut(s) 770
SmiMI CAYNNNNRTG 1 cut(s) 609
SmlI CTYRAG 2 cut(s) 770, 1061
SmoI CTYRAG 2 cut(s) 770, 1061
Sse9I AATT 6 cut(s) 251, 335, 786, 792, 988, 1067
SsiI CCGC 6 cut(s) 48, 230, 235, 947, 1128, 1208
SspMI CTAG 1 cut(s) 726
StyD4I CCNGG 2 cut(s) 74, 492
StyI CCWWGG 1 cut(s) 967
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 1 cut(s) 421
TaqI TCGA 2 cut(s) 771, 1195
TasI AATT 6 cut(s) 251, 335, 786, 792, 988, 1067
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 2 cut(s) 254, 1008
Tru9I TTAA 2 cut(s) 254, 1008
TscAI CASTG 4 cut(s) 289, 369, 456, 631
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 3 cut(s) 359, 901, 904
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 5 cut(s) 593, 882, 929, 1160, 1269
TspGWI ACGGA 1 cut(s) 43
TspRI CASTG 4 cut(s) 289, 369, 456, 631
Van91I CCANNNNNTGG 1 cut(s) 75
VpaK11BI GGWCC 2 cut(s) 496, 944
XapI RAATTY 3 cut(s) 335, 792, 988
XceI RCATGY 3 cut(s) 393, 612, 1117
XcmI CCANNNNNNNNNTGG 2 cut(s) 52, 456
XhoI CTCGAG 1 cut(s) 770
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 1 cut(s) 726
Zsp2I ATGCAT 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.