Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005588

Physical Location & Seq

Genomic Coordinates Reverse (-)

21418001 .. 21421938

Gene Structure 3938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27780.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2070 bp

ATGAAGATGGCAGCATCATCAGCTTGCCTTGTGGGGAATGGTTTATCTACCCATGGTACTAAACCAAGTTTGAGCAAGGAATTCTGTGGGAGACCTCTCTTCCACTCTTCAACTCTTCCATCGTTGGCTAAGGAGACAAAAACAGTTCTTGTAAAGGCATCATTGGACCAAAAACAACATGAAGGAAGAAGAGGTTTTCTCAAGTTGCTTGGAGTACCTGCTTTACTTGGAGCAGCGAGTGCTAAGGCCGATGATCAAGGGCCCTCTTCTTCACGAATGTCTTATTCTAGGTTCTTGGAGTATCTAGACAAGGACAGGGTGACAAAAGTTGATCTATTTGAGAACGGAACCATAGCTATTGTTGAGGCTGTCTCTCCTGAATTAGGCAACCGATTACAGCGAGTTCGTGTGCAACTCCCAGGACTAAGCCAGGAGCTCCTTCAAAAGTTTAGGGAAAAGAACATCGACTTTGCAGCACATAATGCTCAAGAAGACTCGGGCAACCTATTATTCAACCTGATTGGAAATTTGGCTTTCCCACTAATTTTAATTGGGGGCTTGTTCTTACTCTCAAGGCGTTCAGGTGGAGGCATGGGTGGTCCTGGTGGACCTGGTTTTCCCCTCTCCTTTGGTCAGTCAAAAGCCAAGTTTCAAATGGAACCGAACACTGGAGTTACATTTGATGATGTTGCTGGGGTGGATGAAGCCAAGCAGGATTTTGTGGAAGTGGTGGAGTTCTTAAAGAAGCCTGAGAGATTCACTGCTGTTGGAGCTCGCATTCCTAAAGGGGTTCTTCTTGTTGGCCCTCCAGGAACTGGAAAGACTCTGCTAGCAAAGGCAATTGCTGGTGAAGCTGGTGTTCCTTTTTTCTCTATCTCAGGTTCTGAGTTTGTTGAAATGTTTGTTGGTGTTGGTGCTTCTCGAGTCCGTGATCTTTTTAAGAAGGCTAAGGAAAACGCACCTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGACGTCAAAGAGGAACTGGAATTGGTGGAGGCAATGATGAAAGAGAACAGACCCTTAATCAGCTTTTGACAGAAATGGATGGTTTTGAGGGTAACACTGGTATCATTGTGGTTGCAGCAACTAACAGGGCAGATATTCTCGATTCTGCTTTGTTGAGGCCTGGCCGGTTTGACAGGCAGGTGATGGTTGATGTTCCAGACGTACGTGGCAGAACAGATATCTTGAAGGTTCATGCCAGCAATAAGAAGTTTGAGGGAAATGTTTCCCTTGATGTAGTTGCTATGAGAACACCTGGTTTTAGTGGAGCAGATCTTGCCAACCTCCTAAATGAAGCAGCTATATTGGCTGGTCGGCGTGGGAAGACAGCAATTTCATCTAAAGAGATTGATGATTCAATTGATAGAATAGTGGCTGGAATGGAAGGAACAGTAATGACTGACGGAAAGAGCAAGAGTCTGGTAGCATACCACGAAGTTGGGCACGCCATCTGTGGGACACTTACTCCAGGGCATGACGCCGTTCAGAAAGTGACCCTAGTTCCACGTGGTCAAGCTCGTGGTCTTACATGGTTCATTCCTGCAGATGATCCTACCTTAATCTCCAAGCAGCAACTATTTGCAAGAATTGTTGGTGGGCTTGGTGGTAGAGCTGCAGAGGAAGTGATCTTTGGTGAGCCTGAGGTGACAACAGGTGCAGCTGGTGATTTGCAACAGATAACTGGTTTAGCCAAACAGATGGTAACCACATTTGGAATGTCTGATATTGGCCCATGGTCATTGATGGATTCAGCACAGAGTGGTGATGTCATAATGAGAATGATGGCAAGGAACTCAATGTCAGAAAAGCTTGCTGAAGACATTGATTCTGCTATTAAGAGATTGTCTGATGAAGCATATGAGATTGCATTGAGCCACATAAGAAACAACCGTGAAGCGATGGACAAGATAGTGGAGGTCCTTCTTGAGAAGGAAACAATGACCGGGGATGAATTCCGGGCAATCCTCTCAGAATTCACCGAAATCCCAGTTGAAAACCGGGTTGCTGCTACAGTTCCCACTCCAGTCACTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009668 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0022607 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048564 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0061024 GO:0065003 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072593 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

690

Amino Acids

73.77

Weight (kDa)

5.8

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsH_ext	PF06480	74 - 157	1.2e-07	FtsH Extracellular
AAA	PF00004	262 - 394	3.4e-46	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	417 - 460	1.8e-12	AAA+ lid domain
Peptidase_M41	PF01434	476 - 664	7.8e-68	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06430 AT1G06430 AT1G06430 AT2G30950 AT2G30950 AT2G30950 AT2G30950
fragaria_vesca	FvH4_6g27780 FvH4_6g27780 FvH4_6g27780
malus_domestica	MD09G1234500.v1.1 MD17G1263600.v1.1
prunus_persica	Prupe.3G112700_v2.0.a1 Prupe.3G112700_v2.0.a1
pyrus_communis	pycom09g15280 pycom17g26380
rosa_chinensis	RchiOBHm_Chr2g0131061
rosa_roxburghii	Rroxscaffold_2G00113260
rosa_samantha	Rh2AG347000 Rh2AG479700 Rh2BG354500 Rh2BG461700 Rh2CG333000 Rh2DG372500 Rh2DG470900
rosa_wichuraiana	Rw2G028140 Rw2G028180 Rw4G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1165
AatII	GACGTC	1 cut(s)	1003
Acc36I	ACCTGC	2 cut(s)	226, 1165
AccB7I	CCANNNNNTGG	1 cut(s)	815
AclWI	GGATC	1 cut(s)	1577
AcoI	YGGCCR	1 cut(s)	1159
AcsI	RAATTY	4 cut(s)	80, 526, 1985, 2006
AcuI	CTGAAG	1 cut(s)	1869
AcvI	CACGTG	1 cut(s)	1541
AcyI	GRCGYC	2 cut(s)	1000, 1512
AdeI	CACNNNGTG	1 cut(s)	1793
AfaI	GTAC	3 cut(s)	58, 216, 1200
AfiI	CCNNNNNNNGG	4 cut(s)	383, 668, 815, 1488
AgsI	TTSAA	8 cut(s)	111, 443, 514, 653, 896, 1222, 1392, 2027
AjnI	CCWGG	8 cut(s)	418, 429, 601, 610, 808, 1156, 1288, 1501
AjuI	GAANNNNNNNTTGG	4 cut(s)	888, 920, 1647, 1679
Alw21I	GWGCWC	2 cut(s)	438, 775
Alw26I	GTCTC	3 cut(s)	85, 128, 376
AlwI	GGATC	1 cut(s)	1577
AlwNI	CAGNNNCTG	3 cut(s)	815, 884, 2063
Ama87I	CYCGRG	2 cut(s)	496, 921
AoxI	GGCC	6 cut(s)	246, 260, 802, 1154, 1159, 1762
ApaI	GGGCCC	1 cut(s)	264
ApeKI	GCWGC	9 cut(s)	11, 233, 473, 1112, 1331, 1603, 1646, 1691, 2039
ApoI	RAATTY	4 cut(s)	80, 526, 1985, 2006
Asp700I	GAANNNNTTC	1 cut(s)	1258
AspS9I	GGNCC	8 cut(s)	166, 260, 261, 599, 608, 803, 1763, 1951
AsuC2I	CCSGG	3 cut(s)	1978, 1991, 2033
AsuHPI	GGTGA	8 cut(s)	331, 860, 1189, 1679, 1690, 1709, 1808, 2002
AsuNHI	GCTAGC	1 cut(s)	829
AvaI	CYCGRG	2 cut(s)	496, 921
AvaII	GGWCC	4 cut(s)	166, 599, 608, 1951
AxyI	CCTNAGG	1 cut(s)	1674
BaeGI	GKGCMC	2 cut(s)	264, 1479
BaeI	ACNNNNGTAYC	2 cut(s)	1081, 1114
BanII	GRGCYC	3 cut(s)	264, 438, 775
BauI	CACGAG	1 cut(s)	1551
BbrPI	CACGTG	1 cut(s)	1541
BbsI	GAAGAC	3 cut(s)	498, 1364, 1857
Bbv12I	GWGCWC	2 cut(s)	438, 775
BbvI	GCAGC	9 cut(s)	23, 245, 485, 1124, 1343, 1615, 1633, 1703, 2026
BccI	CCATC	8 cut(s)	127, 1070, 1174, 1490, 1726, 1771, 1810, 1927
BceAI	ACGGC	1 cut(s)	1499
BciT130I	CCWGG	8 cut(s)	420, 431, 603, 612, 810, 1158, 1290, 1503
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	3 cut(s)	1978, 1991, 2033
BcoDI	GTCTC	3 cut(s)	85, 128, 376
BfaI	CTAG	4 cut(s)	288, 305, 830, 1532
BfmI	CTRYAG	3 cut(s)	1575, 1647, 2043
BfuAI	ACCTGC	2 cut(s)	226, 1165
BglII	AGATCT	1 cut(s)	1306
BisI	GCNGC	9 cut(s)	12, 234, 474, 1113, 1332, 1604, 1647, 1692, 2040
BlsI	GCNGC	9 cut(s)	13, 235, 475, 1114, 1333, 1605, 1648, 1693, 2041
Bme18I	GGWCC	4 cut(s)	166, 599, 608, 1951
BmeT110I	CYCGRG	2 cut(s)	496, 921
BmgT120I	GGNCC	8 cut(s)	166, 260, 261, 599, 608, 803, 1763, 1951
BmiI	GGNNCC	3 cut(s)	262, 349, 660
BmrI	ACTGGG	1 cut(s)	2015
BmsI	GCATC	3 cut(s)	23, 167, 979
BmtI	GCTAGC	1 cut(s)	833
BmuI	ACTGGG	1 cut(s)	2015
BpiI	GAAGAC	3 cut(s)	498, 1364, 1857
BplI	GAGNNNNNCTC	4 cut(s)	183, 215, 356, 388
BpmI	CTGGAG	4 cut(s)	690, 792, 1485, 2040
Bpu10I	CCTNAGC	3 cut(s)	129, 243, 948
BpuEI	CTTGAG	4 cut(s)	185, 471, 556, 1979
BpuMI	CCSGG	3 cut(s)	1978, 1991, 2033
BsaAI	YACGTR	2 cut(s)	1202, 1541
BsaHI	GRCGYC	2 cut(s)	1000, 1512
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	5 cut(s)	52, 418, 1502, 1766, 1977
BsaXI	ACNNNNNCTCC	2 cut(s)	1483, 1513
Bsc4I	CCNNNNNNNGG	4 cut(s)	383, 668, 815, 1488
Bse118I	RCCGGY	1 cut(s)	1161
Bse1I	ACTGG	7 cut(s)	673, 820, 1018, 1099, 1720, 2021, 2057
Bse21I	CCTNAGG	1 cut(s)	1674
Bse3DI	GCAATG	1 cut(s)	1036
BseBI	CCWGG	8 cut(s)	420, 431, 603, 612, 810, 1158, 1290, 1503
BseDI	CCNNGG	5 cut(s)	52, 418, 1502, 1766, 1977
BseGI	GGATG	3 cut(s)	706, 1081, 1987
BseLI	CCNNNNNNNGG	4 cut(s)	383, 668, 815, 1488
BseMI	GCAATG	1 cut(s)	1036
BseMII	CTCAG	5 cut(s)	741, 876, 891, 1665, 2016
BseNI	ACTGG	7 cut(s)	673, 820, 1018, 1099, 1720, 2021, 2057
BseSI	GKGCMC	2 cut(s)	264, 1479
BseXI	GCAGC	9 cut(s)	23, 245, 485, 1124, 1343, 1615, 1633, 1703, 2026
BseYI	CCCAGC	1 cut(s)	692
BsgI	GTGCAG	1 cut(s)	1710
BshFI	GGCC	6 cut(s)	248, 262, 804, 1156, 1161, 1764
BsiHKAI	GWGCWC	2 cut(s)	438, 775
BsiHKCI	CYCGRG	2 cut(s)	496, 921
BsiSI	CCGG	4 cut(s)	1162, 1977, 1990, 2032
BsiWI	CGTACG	1 cut(s)	1198
BslFI	GGGAC	1 cut(s)	1504
BslI	CCNNNNNNNGG	4 cut(s)	383, 668, 815, 1488
BsmAI	GTCTC	3 cut(s)	85, 128, 376
BsmFI	GGGAC	1 cut(s)	1504
BsmI	GAATGC	1 cut(s)	777
BsnI	GGCC	6 cut(s)	248, 262, 804, 1156, 1161, 1764
Bso31I	GGTCTC	1 cut(s)	85
BsoBI	CYCGRG	2 cut(s)	496, 921
Bsp120I	GGGCCC	1 cut(s)	260
Bsp1286I	GDGCHC	4 cut(s)	264, 438, 775, 1479
Bsp143I	GATC	6 cut(s)	253, 331, 931, 1306, 1582, 1659
Bsp19I	CCATGG	2 cut(s)	52, 1766
BspANI	GGCC	6 cut(s)	248, 262, 804, 1156, 1161, 1764
BspCNI	CTCAG	5 cut(s)	742, 877, 890, 1666, 2015
BspLI	GGNNCC	3 cut(s)	262, 349, 660
BspMAI	CTGCAG	2 cut(s)	1579, 1651
BspMI	ACCTGC	2 cut(s)	226, 1165
BspOI	GCTAGC	1 cut(s)	833
BspPI	GGATC	1 cut(s)	1577
BspTNI	GGTCTC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	1036
BsrFI	RCCGGY	1 cut(s)	1161
BsrI	ACTGG	7 cut(s)	673, 820, 1018, 1099, 1720, 2021, 2057
BssAI	RCCGGY	1 cut(s)	1161
BssECI	CCNNGG	5 cut(s)	52, 418, 1502, 1766, 1977
BssMI	GATC	6 cut(s)	253, 331, 931, 1306, 1582, 1659
BssNI	GRCGYC	2 cut(s)	1000, 1512
BssSI	CACGAG	1 cut(s)	1551
BssT1I	CCWWGG	2 cut(s)	52, 1766
Bst2BI	CACGAG	1 cut(s)	1551
Bst2UI	CCWGG	8 cut(s)	420, 431, 603, 612, 810, 1158, 1290, 1503
Bst4CI	ACNGT	5 cut(s)	145, 1426, 1925, 2047, 2065
Bst6I	CTCTTC	5 cut(s)	104, 112, 120, 184, 271
BstACI	GRCGYC	2 cut(s)	1000, 1512
BstAPI	GCANNNNNTGC	3 cut(s)	239, 482, 1310
BstBAI	YACGTR	2 cut(s)	1202, 1541
BstC8I	GCNNGC	6 cut(s)	25, 775, 831, 1234, 1479, 1845
BstDEI	CTNAG	9 cut(s)	129, 243, 425, 750, 877, 885, 948, 1674, 2002
BstDSI	CCRYGG	2 cut(s)	52, 1766
BstEII	GGTNACC	1 cut(s)	1735
BstENI	CCTNNNNNAGG	1 cut(s)	381
BstF5I	GGATG	3 cut(s)	706, 1081, 1987
BstKTI	GATC	6 cut(s)	256, 334, 934, 1309, 1585, 1662
BstMAI	GTCTC	3 cut(s)	85, 128, 376
BstMBI	GATC	6 cut(s)	253, 331, 931, 1306, 1582, 1659
BstMWI	GCNNNNNNNGC	7 cut(s)	20, 239, 482, 770, 851, 1310, 1340
BstNI	CCWGG	8 cut(s)	420, 431, 603, 612, 810, 1158, 1290, 1503
BstPI	GGTNACC	1 cut(s)	1735
BstSFI	CTRYAG	3 cut(s)	1575, 1647, 2043
BstSLI	GKGCMC	2 cut(s)	264, 1479
BstV1I	GCAGC	9 cut(s)	23, 245, 485, 1124, 1343, 1615, 1633, 1703, 2026
BstV2I	GAAGAC	3 cut(s)	498, 1364, 1857
BstX2I	RGATCY	1 cut(s)	1306
BstXI	CCANNNNNNTGG	2 cut(s)	1472, 1732
BstYI	RGATCY	1 cut(s)	1306
Bsu36I	CCTNAGG	1 cut(s)	1674
BsuRI	GGCC	6 cut(s)	248, 262, 804, 1156, 1161, 1764
BtgI	CCRYGG	2 cut(s)	52, 1766
BtgZI	GCGATG	1 cut(s)	1946
BtsCI	GGATG	3 cut(s)	706, 1081, 1987
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	4 cut(s)	666, 759, 1092, 2061
BveI	ACCTGC	2 cut(s)	226, 1165
Cac8I	GCNNGC	6 cut(s)	25, 775, 831, 1234, 1479, 1845
CaiI	CAGNNNCTG	3 cut(s)	815, 884, 2063
Cfr10I	RCCGGY	1 cut(s)	1161
Cfr13I	GGNCC	8 cut(s)	166, 260, 261, 599, 608, 803, 1763, 1951
CseI	GACGC	1 cut(s)	1520
CsiI	ACCWGGT	2 cut(s)	610, 1288
Csp6I	GTAC	3 cut(s)	57, 215, 1199
CviAII	CATG	7 cut(s)	53, 179, 592, 1229, 1508, 1563, 1767
CviQI	GTAC	3 cut(s)	57, 215, 1199
DdeI	CTNAG	9 cut(s)	129, 243, 425, 750, 877, 885, 948, 1674, 2002
DpnI	GATC	6 cut(s)	255, 333, 933, 1308, 1584, 1661
DpnII	GATC	6 cut(s)	253, 331, 931, 1306, 1582, 1659
DraIII	CACNNNGTG	1 cut(s)	1793
EaeI	YGGCCR	1 cut(s)	1159
Eam1104I	CTCTTC	5 cut(s)	104, 112, 120, 184, 271
EarI	CTCTTC	5 cut(s)	104, 112, 120, 184, 271
Ecl136II	GAGCTC	2 cut(s)	436, 773
Eco130I	CCWWGG	2 cut(s)	52, 1766
Eco147I	AGGCCT	1 cut(s)	1156
Eco24I	GRGCYC	3 cut(s)	264, 438, 775
Eco31I	GGTCTC	1 cut(s)	85
Eco32I	GATATC	1 cut(s)	1216
Eco47I	GGWCC	4 cut(s)	166, 599, 608, 1951
Eco53kI	GAGCTC	2 cut(s)	436, 773
Eco57I	CTGAAG	1 cut(s)	1869
Eco72I	CACGTG	1 cut(s)	1541
Eco81I	CCTNAGG	1 cut(s)	1674
Eco88I	CYCGRG	2 cut(s)	496, 921
Eco91I	GGTNACC	1 cut(s)	1735
EcoICRI	GAGCTC	2 cut(s)	436, 773
EcoNI	CCTNNNNNAGG	1 cut(s)	381
EcoO109I	RGGNCCY	3 cut(s)	260, 261, 1951
EcoO65I	GGTNACC	1 cut(s)	1735
EcoRI	GAATTC	3 cut(s)	80, 1985, 2006
EcoRII	CCWGG	8 cut(s)	418, 429, 601, 610, 808, 1156, 1288, 1501
EcoRV	GATATC	1 cut(s)	1216
EcoT14I	CCWWGG	2 cut(s)	52, 1766
EcoT38I	GRGCYC	3 cut(s)	264, 438, 775
ErhI	CCWWGG	2 cut(s)	52, 1766
FaeI	CATG	7 cut(s)	56, 182, 595, 1232, 1511, 1566, 1770
FalI	AAGNNNNNCTT	2 cut(s)	777, 809
FaqI	GGGAC	1 cut(s)	1504
FatI	CATG	7 cut(s)	52, 178, 591, 1228, 1507, 1562, 1766
FauNDI	CATATG	1 cut(s)	1891
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	9 cut(s)	12, 234, 474, 1113, 1332, 1604, 1647, 1692, 2040
FokI	GGATG	3 cut(s)	713, 1088, 1994
FriOI	GRGCYC	3 cut(s)	264, 438, 775
Fsp4HI	GCNGC	9 cut(s)	12, 234, 474, 1113, 1332, 1604, 1647, 1692, 2040
FspBI	CTAG	4 cut(s)	288, 305, 830, 1532
GluI	GCNGC	9 cut(s)	12, 234, 474, 1113, 1332, 1604, 1647, 1692, 2040
GsaI	CCCAGC	1 cut(s)	696
GsuI	CTGGAG	4 cut(s)	690, 792, 1485, 2040
HaeIII	GGCC	6 cut(s)	248, 262, 804, 1156, 1161, 1764
HapII	CCGG	4 cut(s)	1162, 1977, 1990, 2032
HgaI	GACGC	1 cut(s)	1520
Hin1I	GRCGYC	2 cut(s)	1000, 1512
Hin1II	CATG	7 cut(s)	56, 182, 595, 1232, 1511, 1566, 1770
HindIII	AAGCTT	1 cut(s)	1841
HinfI	GANTC	9 cut(s)	494, 756, 823, 924, 1139, 1388, 1450, 1781, 1859
HpaII	CCGG	4 cut(s)	1162, 1977, 1990, 2032
HphI	GGTGA	8 cut(s)	331, 860, 1189, 1679, 1690, 1709, 1808, 2002
Hpy166II	GTNNAC	1 cut(s)	608
Hpy188I	TCNGA	6 cut(s)	886, 1521, 1756, 1837, 1882, 2005
Hpy188III	TCNNGA	9 cut(s)	273, 305, 377, 488, 921, 1136, 1193, 1219, 1958
Hpy8I	GTNNAC	1 cut(s)	608
HpyAV	CCTTC	7 cut(s)	176, 449, 937, 1216, 1412, 1957, 1964
HpyCH4III	ACNGT	5 cut(s)	145, 1426, 1925, 2047, 2065
HpyCH4IV	ACGT	4 cut(s)	1000, 1197, 1201, 1540
HpyF10VI	GCNNNNNNNGC	7 cut(s)	20, 239, 482, 770, 851, 1310, 1340
HpyF3I	CTNAG	9 cut(s)	129, 243, 425, 750, 877, 885, 948, 1674, 2002
HpySE526I	ACGT	4 cut(s)	1000, 1197, 1201, 1540
Hsp92I	GRCGYC	2 cut(s)	1000, 1512
Hsp92II	CATG	7 cut(s)	56, 182, 595, 1232, 1511, 1566, 1770
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	6 cut(s)	253, 331, 931, 1306, 1582, 1659
LmnI	GCTCC	5 cut(s)	230, 433, 441, 770, 1301
Lsp1109I	GCAGC	9 cut(s)	23, 245, 485, 1124, 1343, 1615, 1633, 1703, 2026
LweI	GCATC	3 cut(s)	23, 167, 979
MabI	ACCWGGT	2 cut(s)	610, 1288
MaeI	CTAG	4 cut(s)	288, 305, 830, 1532
MaeII	ACGT	4 cut(s)	1000, 1197, 1201, 1540
MaeIII	GTNAC	7 cut(s)	319, 673, 1088, 1525, 1678, 1735, 2059
MalI	GATC	6 cut(s)	255, 333, 933, 1308, 1584, 1661
MboI	GATC	6 cut(s)	253, 331, 931, 1306, 1582, 1659
MfeI	CAATTG	2 cut(s)	840, 1392
MflI	RGATCY	1 cut(s)	1306
MhlI	GDGCHC	4 cut(s)	264, 438, 775, 1479
MlyI	GAGTC	4 cut(s)	488, 817, 933, 1459
MmeI	TCCRAC	2 cut(s)	748, 976
MroXI	GAANNNNTTC	1 cut(s)	1258
MseI	TTAA	6 cut(s)	548, 740, 939, 1053, 1592, 1869
MspA1I	CMGCKG	1 cut(s)	1694
MspI	CCGG	4 cut(s)	1162, 1977, 1990, 2032
MunI	CAATTG	2 cut(s)	840, 1392
Mva1269I	GAATGC	1 cut(s)	777
MvaI	CCWGG	8 cut(s)	420, 431, 603, 612, 810, 1158, 1290, 1503
MwoI	GCNNNNNNNGC	7 cut(s)	20, 239, 482, 770, 851, 1310, 1340
NciI	CCSGG	3 cut(s)	1978, 1991, 2033
NcoI	CCATGG	2 cut(s)	52, 1766
NdeI	CATATG	1 cut(s)	1891
NdeII	GATC	6 cut(s)	253, 331, 931, 1306, 1582, 1659
NheI	GCTAGC	1 cut(s)	829
NlaIII	CATG	7 cut(s)	56, 182, 595, 1232, 1511, 1566, 1770
NlaIV	GGNNCC	3 cut(s)	262, 349, 660
NmuCI	GTSAC	4 cut(s)	319, 1525, 1678, 2059
PaeR7I	CTCGAG	1 cut(s)	921
PaqCI	CACCTGC	1 cut(s)	1165
PceI	AGGCCT	1 cut(s)	1156
PctI	GAATGC	1 cut(s)	777
PdmI	GAANNNNTTC	1 cut(s)	1258
PfeI	GAWTC	5 cut(s)	756, 1139, 1388, 1781, 1859
Pfl23II	CGTACG	1 cut(s)	1198
PflMI	CCANNNNNTGG	1 cut(s)	815
PfoI	TCCNGGA	1 cut(s)	808
PkrI	GCNGC	9 cut(s)	13, 235, 475, 1114, 1333, 1605, 1648, 1693, 2041
PleI	GAGTC	4 cut(s)	488, 817, 932, 1458
PmaCI	CACGTG	1 cut(s)	1541
PmlI	CACGTG	1 cut(s)	1541
PpsI	GAGTC	4 cut(s)	488, 817, 932, 1458
Ppu21I	YACGTR	2 cut(s)	1202, 1541
PpuMI	RGGWCCY	1 cut(s)	1951
Psp124BI	GAGCTC	2 cut(s)	438, 775
Psp5II	RGGWCCY	1 cut(s)	1951
Psp6I	CCWGG	8 cut(s)	418, 429, 601, 610, 808, 1156, 1288, 1501
PspCI	CACGTG	1 cut(s)	1541
PspEI	GGTNACC	1 cut(s)	1735
PspFI	CCCAGC	1 cut(s)	692
PspGI	CCWGG	8 cut(s)	418, 429, 601, 610, 808, 1156, 1288, 1501
PspLI	CGTACG	1 cut(s)	1198
PspN4I	GGNNCC	3 cut(s)	262, 349, 660
PspOMI	GGGCCC	1 cut(s)	260
PspPI	GGNCC	8 cut(s)	166, 260, 261, 599, 608, 803, 1763, 1951
PspPPI	RGGWCCY	1 cut(s)	1951
PstI	CTGCAG	2 cut(s)	1579, 1651
PstNI	CAGNNNCTG	3 cut(s)	815, 884, 2063
PsuI	RGATCY	1 cut(s)	1306
PvuII	CAGCTG	1 cut(s)	1694
RsaI	GTAC	3 cut(s)	58, 216, 1200
RsaNI	GTAC	3 cut(s)	57, 215, 1199
SacI	GAGCTC	2 cut(s)	438, 775
SaqAI	TTAA	6 cut(s)	548, 740, 939, 1053, 1592, 1869
SatI	GCNGC	9 cut(s)	12, 234, 474, 1113, 1332, 1604, 1647, 1692, 2040
Sau3AI	GATC	6 cut(s)	253, 331, 931, 1306, 1582, 1659
Sau96I	GGNCC	8 cut(s)	166, 260, 261, 599, 608, 803, 1763, 1951
SchI	GAGTC	4 cut(s)	488, 817, 933, 1459
SduI	GDGCHC	4 cut(s)	264, 438, 775, 1479
SexAI	ACCWGGT	2 cut(s)	610, 1288
SfaNI	GCATC	3 cut(s)	23, 167, 979
SfcI	CTRYAG	3 cut(s)	1575, 1647, 2043
Sfr274I	CTCGAG	1 cut(s)	921
SinI	GGWCC	4 cut(s)	166, 599, 608, 1951
SlaI	CTCGAG	1 cut(s)	921
SmlI	CTYRAG	5 cut(s)	200, 486, 571, 921, 1958
SmoI	CTYRAG	5 cut(s)	200, 486, 571, 921, 1958
SseBI	AGGCCT	1 cut(s)	1156
SspMI	CTAG	4 cut(s)	288, 305, 830, 1532
SstI	GAGCTC	2 cut(s)	438, 775
StuI	AGGCCT	1 cut(s)	1156
StyI	CCWWGG	2 cut(s)	52, 1766
TaaI	ACNGT	5 cut(s)	145, 1426, 1925, 2047, 2065
TaiI	ACGT	4 cut(s)	1003, 1200, 1204, 1543
TaqI	TCGA	3 cut(s)	465, 922, 1137
TfiI	GAWTC	5 cut(s)	756, 1139, 1388, 1781, 1859
Tru1I	TTAA	6 cut(s)	548, 740, 939, 1053, 1592, 1869
Tru9I	TTAA	6 cut(s)	548, 740, 939, 1053, 1592, 1869
TscAI	CASTG	4 cut(s)	673, 766, 1099, 2068
TseFI	GTSAC	4 cut(s)	319, 1525, 1678, 2059
TseI	GCWGC	9 cut(s)	11, 233, 473, 1112, 1331, 1603, 1646, 1691, 2039
Tsp45I	GTSAC	4 cut(s)	319, 1525, 1678, 2059
TspGWI	ACGGA	3 cut(s)	360, 917, 1452
TspRI	CASTG	4 cut(s)	673, 766, 1099, 2068
Van91I	CCANNNNNTGG	1 cut(s)	815
VpaK11BI	GGWCC	4 cut(s)	166, 599, 608, 1951
XagI	CCTNNNNNAGG	1 cut(s)	381
XapI	RAATTY	4 cut(s)	80, 526, 1985, 2006
XbaI	TCTAGA	1 cut(s)	304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	652
XhoI	CTCGAG	1 cut(s)	921
XmnI	GAANNNNTTC	1 cut(s)	1258
XspI	CTAG	4 cut(s)	288, 305, 830, 1532
ZraI	GACGTC	1 cut(s)	1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.