Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005588

Physical Location & Seq

Genomic Coordinates Reverse (-)

68218599 .. 68219608

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG470900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCTTTCATCCAATATATCCAAACTCATCTTAGTTTTCTTTTTTGGTTCTGCTGGTGGCTCTAATAACTCTCAAGGAAAGTTAATAACCCACCTATTGTTCTCATTTTCTCTTCAATACAGGACATTGACTCCAGGGCACGATGCCGTTCAGAAAGTGACCCTAGTTCCACGAGGTCAAGCACGTGGTCTTACATGGTTCATTCCTGCAGATGATCCTACCTTGATCTCCAAGCAGCAACTATTTGCAAGAATTGTTGGTGGGCTTGGTGGTAGAGCAGCAGAGGAAGTGATCTTTGGTGAGCCAGAGGTGACAACAGGTGCAGCTGGTGATTTGCAGCAGATTGTTGCTATCAAATTTAAGCTGTTTCTGTTTGTTGCTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009668 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0022607 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048564 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0061024 GO:0065003 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072593 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

128

Amino Acids

13.75

Weight (kDa)

9.6

Isoelectric Point (pI)

22.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M41	PF01434	42 - 118	1.4e-26	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06430 AT1G06430 AT1G06430 AT2G30950 AT2G30950 AT2G30950 AT2G30950
fragaria_vesca	FvH4_6g27780 FvH4_6g27780 FvH4_6g27780
malus_domestica	MD09G1234500.v1.1 MD17G1263600.v1.1
prunus_persica	Prupe.3G112700_v2.0.a1 Prupe.3G112700_v2.0.a1
pyrus_communis	pycom09g15280 pycom17g26380
rosa_chinensis	RchiOBHm_Chr2g0131061
rosa_roxburghii	Rroxscaffold_2G00113260
rosa_samantha	Rh2AG347000 Rh2AG479700 Rh2BG354500 Rh2BG461700 Rh2CG333000 Rh2DG372500 Rh2DG470900
rosa_wichuraiana	Rw2G028140 Rw2G028180 Rw4G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	356
AcvI	CACGTG	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	133
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	2 cut(s)	326, 364
AluI	AGCT	2 cut(s)	326, 364
AlwI	GGATC	1 cut(s)	209
ApeKI	GCWGC	4 cut(s)	235, 278, 323, 337
ApoI	RAATTY	1 cut(s)	356
AsuHPI	GGTGA	3 cut(s)	311, 322, 341
BaeGI	GKGCMC	1 cut(s)	141
BauI	CACGAG	1 cut(s)	171
BbrPI	CACGTG	1 cut(s)	185
BbvI	GCAGC	4 cut(s)	247, 290, 335, 349
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	135
BfaI	CTAG	2 cut(s)	164, 381
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	4 cut(s)	236, 279, 324, 338
BlsI	GCNGC	4 cut(s)	237, 280, 325, 339
Bme1390I	CCNGG	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	133
BpmI	CTGGAG	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	57
BsaAI	YACGTR	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	8
BseSI	GKGCMC	1 cut(s)	141
BseXI	GCAGC	4 cut(s)	247, 290, 335, 349
BsgI	GTGCAG	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	214, 225, 291
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	134
BssMI	GATC	3 cut(s)	214, 225, 291
BssSI	CACGAG	1 cut(s)	171
Bst2BI	CACGAG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	135
Bst6I	CTCTTC	1 cut(s)	117
BstBAI	YACGTR	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	8
BstKTI	GATC	3 cut(s)	217, 228, 294
BstMBI	GATC	3 cut(s)	214, 225, 291
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	141
BstV1I	GCAGC	4 cut(s)	247, 290, 335, 349
BtsCI	GGATG	1 cut(s)	8
CviAII	CATG	1 cut(s)	195
CviJI	RGCY	5 cut(s)	60, 265, 304, 326, 364
CviKI_1	RGCY	5 cut(s)	60, 265, 304, 326, 364
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	3 cut(s)	216, 227, 293
DpnII	GATC	3 cut(s)	214, 225, 291
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco72I	CACGTG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	133
FaeI	CATG	1 cut(s)	198
FaiI	YATR	2 cut(s)	17, 196
FatI	CATG	1 cut(s)	194
Fnu4HI	GCNGC	4 cut(s)	236, 279, 324, 338
Fsp4HI	GCNGC	4 cut(s)	236, 279, 324, 338
FspBI	CTAG	2 cut(s)	164, 381
GluI	GCNGC	4 cut(s)	236, 279, 324, 338
GsuI	CTGGAG	1 cut(s)	117
Hin1II	CATG	1 cut(s)	198
HinfI	GANTC	1 cut(s)	130
HphI	GGTGA	3 cut(s)	311, 322, 341
Hpy188I	TCNGA	1 cut(s)	153
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	4 cut(s)	209, 248, 323, 337
HpyF3I	CTNAG	1 cut(s)	31
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	1 cut(s)	198
Kzo9I	GATC	3 cut(s)	214, 225, 291
LpnPI	CCDG	8 cut(s)	39, 106, 120, 147, 219, 303, 312, 318
Lsp1109I	GCAGC	4 cut(s)	247, 290, 335, 349
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	2 cut(s)	164, 381
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	2 cut(s)	157, 310
MalI	GATC	3 cut(s)	216, 227, 293
MboI	GATC	3 cut(s)	214, 225, 291
MboII	GAAGA	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	2 cut(s)	252, 356
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	3 cut(s)	167, 277, 301
MseI	TTAA	2 cut(s)	83, 360
MspA1I	CMGCKG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
NdeII	GATC	3 cut(s)	214, 225, 291
NlaIII	CATG	1 cut(s)	198
NmuCI	GTSAC	2 cut(s)	157, 310
PkrI	GCNGC	4 cut(s)	237, 280, 325, 339
PleI	GAGTC	1 cut(s)	124
PmaCI	CACGTG	1 cut(s)	185
PmlI	CACGTG	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	124
Ppu21I	YACGTR	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	133
PspCI	CACGTG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	326
SaqAI	TTAA	2 cut(s)	83, 360
SatI	GCNGC	4 cut(s)	236, 279, 324, 338
Sau3AI	GATC	3 cut(s)	214, 225, 291
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	8 cut(s)	96, 178, 187, 224, 312, 322, 328, 366
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	2 cut(s)	252, 356
SspMI	CTAG	2 cut(s)	164, 381
StyD4I	CCNGG	1 cut(s)	133
TaiI	ACGT	1 cut(s)	187
TasI	AATT	2 cut(s)	252, 356
Tru1I	TTAA	2 cut(s)	83, 360
Tru9I	TTAA	2 cut(s)	83, 360
TseFI	GTSAC	2 cut(s)	157, 310
TseI	GCWGC	4 cut(s)	235, 278, 323, 337
Tsp45I	GTSAC	2 cut(s)	157, 310
TspDTI	ATGAA	1 cut(s)	190
XapI	RAATTY	1 cut(s)	356
XspI	CTAG	2 cut(s)	164, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.