Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005588

Physical Location & Seq

Genomic Coordinates Reverse (-)

69921017 .. 69926596

Gene Structure 5580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG479700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCTTTCATCCAATATATCCAAACTCATCTTAGTTTTCTTTTTTGGTTCTGCTGATGGCTCTAATAACTCTCAAGGAAAGTTAATAATAACCCACCTATTGTTCTCATTTTCTCTTCAATACAGGACATTGACTCCAGGGCACGATGCCGTTCAGAAAGTGACCCTAGTTCCACGAGGTCAAGCACGTGGTCTTACATGGTTCATTCCTGCAGATGATCCTACCTTGATCTCCAAGCAGCAACTATTTGCAAGAATTGTTGGTGGGCTTGGTGGTAGAGCAGCAGAGGAAGTGATCTTTGGTGAGCCAGAGGTGACAACAGGTGCAGCTGGTGATTTGCAGCAGATCACTGGTTTAGCCAAACAGATGGTAACCACATTTGGAATGTCCGACATTGGCCCATGGTCATTGATGGATTCAGCTCAGAGTGGTGATGTCATAATGAGAATGATGGCAAGGAACTCAATGTCAGAAAAGCTTGCTGAAGACATTGATTCTGCTATTAAGAGATTATCTGATGAAGCATATGAGATTGCATTGAGCCACATAAGAAACAACCGTGAAGCCATGGACAAGATAGTGGAGGTCCTTCTTGAGAAGGAAACAATGACCGGGGATGAATTCCGGGCAATCCTCTCTAAATTCACTGAAATCCCAGTCGAAAACCGGGTTGCTGCTGCGGCCCCTACTCCAGTCGCTGAGTATGAGTTAAATGCCTCACTAGATGTGCATGGATCTGGTGTTTTGGCATTGGAACGATCGGATTGGTGGAACGCTGGCGATGGAGCAACCTTCATGGGCACTACGGGTTGGAGGCATGCTGATCTAGTTTCTGGCCACACGGACTTGGGGTTGGGATGGGATTTGGGATCTTTCGCTGGTGTTCCGTCGGTGACAGGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009668 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0022607 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048564 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0061024 GO:0065003 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072593 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

301

Amino Acids

32.54

Weight (kDa)

4.87

Isoelectric Point (pI)

32.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M41	PF01434	43 - 211	1.6e-56	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06430 AT1G06430 AT1G06430 AT2G30950 AT2G30950 AT2G30950 AT2G30950
fragaria_vesca	FvH4_6g27780 FvH4_6g27780 FvH4_6g27780
malus_domestica	MD09G1234500.v1.1 MD17G1263600.v1.1
prunus_persica	Prupe.3G112700_v2.0.a1 Prupe.3G112700_v2.0.a1
pyrus_communis	pycom09g15280 pycom17g26380
rosa_chinensis	RchiOBHm_Chr2g0131061
rosa_roxburghii	Rroxscaffold_2G00113260
rosa_samantha	Rh2AG347000 Rh2AG479700 Rh2BG354500 Rh2BG461700 Rh2CG333000 Rh2DG372500 Rh2DG470900
rosa_wichuraiana	Rw2G028140 Rw2G028180 Rw4G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	680
AclWI	GGATC	3 cut(s)	212, 742, 877
AcoI	YGGCCR	1 cut(s)	835
AcsI	RAATTY	2 cut(s)	620, 641
AcuI	CTGAAG	1 cut(s)	504
AcvI	CACGTG	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	136
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AluBI	AGCT	3 cut(s)	329, 422, 478
AluI	AGCT	3 cut(s)	329, 422, 478
AlwI	GGATC	3 cut(s)	212, 742, 877
AlwNI	CAGNNNCTG	1 cut(s)	698
AoxI	GGCC	3 cut(s)	397, 681, 835
ApeKI	GCWGC	6 cut(s)	238, 281, 326, 340, 674, 677
ApoI	RAATTY	2 cut(s)	620, 641
AspS9I	GGNCC	3 cut(s)	398, 586, 682
AsuC2I	CCSGG	3 cut(s)	613, 626, 668
AsuHPI	GGTGA	5 cut(s)	314, 325, 344, 443, 904
AvaII	GGWCC	1 cut(s)	586
BaeGI	GKGCMC	2 cut(s)	144, 803
BalI	TGGCCA	1 cut(s)	837
BauI	CACGAG	1 cut(s)	174
BbrPI	CACGTG	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	492
BbvI	GCAGC	6 cut(s)	250, 293, 338, 352, 661, 664
BccI	CCATC	6 cut(s)	50, 361, 406, 445, 776, 852
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	138
BcnI	CCSGG	3 cut(s)	613, 626, 668
BfaI	CTAG	3 cut(s)	167, 722, 827
BfmI	CTRYAG	1 cut(s)	210
BisI	GCNGC	7 cut(s)	239, 282, 327, 341, 675, 678, 681
BlsI	GCNGC	7 cut(s)	240, 283, 328, 342, 676, 679, 682
Bme1390I	CCNGG	4 cut(s)	138, 613, 626, 668
Bme18I	GGWCC	1 cut(s)	586
BmgT120I	GGNCC	3 cut(s)	398, 586, 682
BmiI	GGNNCC	1 cut(s)	684
BmrFI	CCNGG	4 cut(s)	138, 613, 626, 668
BmrI	ACTGGG	1 cut(s)	650
BmsI	GCATC	1 cut(s)	136
BmuI	ACTGGG	1 cut(s)	650
BpiI	GAAGAC	1 cut(s)	492
BpmI	CTGGAG	2 cut(s)	120, 675
BpuEI	CTTGAG	2 cut(s)	57, 614
BpuMI	CCSGG	3 cut(s)	613, 626, 668
BsaAI	YACGTR	1 cut(s)	188
BsaJI	CCNNGG	4 cut(s)	137, 401, 567, 612
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bse1I	ACTGG	3 cut(s)	355, 656, 692
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	4 cut(s)	137, 401, 567, 612
BseGI	GGATG	3 cut(s)	8, 622, 863
BseMII	CTCAG	2 cut(s)	437, 690
BseNI	ACTGG	3 cut(s)	355, 656, 692
BseSI	GKGCMC	2 cut(s)	144, 803
BseXI	GCAGC	6 cut(s)	250, 293, 338, 352, 661, 664
BsgI	GTGCAG	1 cut(s)	345
Bsh1285I	CGRYCG	1 cut(s)	761
BshFI	GGCC	3 cut(s)	399, 683, 837
BsiEI	CGRYCG	1 cut(s)	761
BsiSI	CCGG	3 cut(s)	612, 625, 667
BsnI	GGCC	3 cut(s)	399, 683, 837
Bsp1286I	GDGCHC	2 cut(s)	144, 803
Bsp143I	GATC	8 cut(s)	217, 228, 294, 345, 734, 758, 823, 869
Bsp19I	CCATGG	2 cut(s)	401, 567
BspACI	CCGC	1 cut(s)	680
BspANI	GGCC	3 cut(s)	399, 683, 837
BspCNI	CTCAG	2 cut(s)	436, 691
BspLI	GGNNCC	1 cut(s)	684
BspMAI	CTGCAG	1 cut(s)	214
BspPI	GGATC	3 cut(s)	212, 742, 877
BsrI	ACTGG	3 cut(s)	355, 656, 692
BssECI	CCNNGG	4 cut(s)	137, 401, 567, 612
BssMI	GATC	8 cut(s)	217, 228, 294, 345, 734, 758, 823, 869
BssSI	CACGAG	1 cut(s)	174
BssT1I	CCWWGG	2 cut(s)	401, 567
Bst2BI	CACGAG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	560
Bst6I	CTCTTC	1 cut(s)	120
BstBAI	YACGTR	1 cut(s)	188
BstC8I	GCNNGC	3 cut(s)	480, 778, 819
BstDEI	CTNAG	3 cut(s)	31, 423, 699
BstDSI	CCRYGG	2 cut(s)	401, 567
BstEII	GGTNACC	1 cut(s)	370
BstF5I	GGATG	3 cut(s)	8, 622, 863
BstKTI	GATC	8 cut(s)	220, 231, 297, 348, 737, 761, 826, 872
BstMBI	GATC	8 cut(s)	217, 228, 294, 345, 734, 758, 823, 869
BstMCI	CGRYCG	1 cut(s)	761
BstMWI	GCNNNNNNNGC	1 cut(s)	680
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	1 cut(s)	821
BstPI	GGTNACC	1 cut(s)	370
BstSCI	CCNGG	4 cut(s)	136, 611, 624, 666
BstSFI	CTRYAG	1 cut(s)	210
BstSLI	GKGCMC	2 cut(s)	144, 803
BstV1I	GCAGC	6 cut(s)	250, 293, 338, 352, 661, 664
BstV2I	GAAGAC	1 cut(s)	492
BstX2I	RGATCY	2 cut(s)	734, 869
BstXI	CCANNNNNNTGG	1 cut(s)	367
BstYI	RGATCY	2 cut(s)	734, 869
BsuRI	GGCC	3 cut(s)	399, 683, 837
BtgI	CCRYGG	2 cut(s)	401, 567
BtgZI	GCGATG	1 cut(s)	795
BtsCI	GGATG	3 cut(s)	8, 622, 863
BtsIMutI	CAGTG	2 cut(s)	348, 645
Cac8I	GCNNGC	3 cut(s)	480, 778, 819
CaiI	CAGNNNCTG	1 cut(s)	698
Cfr13I	GGNCC	3 cut(s)	398, 586, 682
CviAII	CATG	6 cut(s)	198, 402, 568, 731, 796, 818
DdeI	CTNAG	3 cut(s)	31, 423, 699
DpnI	GATC	8 cut(s)	219, 230, 296, 347, 736, 760, 825, 871
DpnII	GATC	8 cut(s)	217, 228, 294, 345, 734, 758, 823, 869
EaeI	YGGCCR	1 cut(s)	835
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco130I	CCWWGG	2 cut(s)	401, 567
Eco47I	GGWCC	1 cut(s)	586
Eco57I	CTGAAG	1 cut(s)	504
Eco72I	CACGTG	1 cut(s)	188
Eco91I	GGTNACC	1 cut(s)	370
EcoO109I	RGGNCCY	1 cut(s)	586
EcoO65I	GGTNACC	1 cut(s)	370
EcoRI	GAATTC	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	136
EcoT14I	CCWWGG	2 cut(s)	401, 567
ErhI	CCWWGG	2 cut(s)	401, 567
FaeI	CATG	6 cut(s)	201, 405, 571, 734, 799, 821
FatI	CATG	6 cut(s)	197, 401, 567, 730, 795, 817
FauNDI	CATATG	1 cut(s)	526
Fnu4HI	GCNGC	7 cut(s)	239, 282, 327, 341, 675, 678, 681
FokI	GGATG	2 cut(s)	629, 870
Fsp4HI	GCNGC	7 cut(s)	239, 282, 327, 341, 675, 678, 681
FspBI	CTAG	3 cut(s)	167, 722, 827
GluI	GCNGC	7 cut(s)	239, 282, 327, 341, 675, 678, 681
GsuI	CTGGAG	2 cut(s)	120, 675
HaeIII	GGCC	3 cut(s)	399, 683, 837
HapII	CCGG	3 cut(s)	612, 625, 667
Hin1II	CATG	6 cut(s)	201, 405, 571, 734, 799, 821
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	3 cut(s)	133, 416, 494
HpaII	CCGG	3 cut(s)	612, 625, 667
HphI	GGTGA	5 cut(s)	314, 325, 344, 443, 904
Hpy188I	TCNGA	6 cut(s)	156, 391, 426, 472, 517, 763
Hpy188III	TCNNGA	1 cut(s)	593
Hpy99I	CGWCG	1 cut(s)	892
HpyAV	CCTTC	3 cut(s)	592, 599, 802
HpyCH4III	ACNGT	1 cut(s)	560
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	6 cut(s)	212, 251, 326, 340, 536, 730
HpyF10VI	GCNNNNNNNGC	1 cut(s)	680
HpyF3I	CTNAG	3 cut(s)	31, 423, 699
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	6 cut(s)	201, 405, 571, 734, 799, 821
Kzo9I	GATC	8 cut(s)	217, 228, 294, 345, 734, 758, 823, 869
LmnI	GCTCC	1 cut(s)	785
Lsp1109I	GCAGC	6 cut(s)	250, 293, 338, 352, 661, 664
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	3 cut(s)	167, 722, 827
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	4 cut(s)	160, 313, 370, 892
MalI	GATC	8 cut(s)	219, 230, 296, 347, 736, 760, 825, 871
MboI	GATC	8 cut(s)	217, 228, 294, 345, 734, 758, 823, 869
MboII	GAAGA	2 cut(s)	107, 497
MflI	RGATCY	2 cut(s)	734, 869
MhlI	GDGCHC	2 cut(s)	144, 803
MlsI	TGGCCA	1 cut(s)	837
MluCI	AATT	3 cut(s)	255, 620, 641
MluNI	TGGCCA	1 cut(s)	837
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	2 cut(s)	414, 791
MnlI	CCTC	7 cut(s)	170, 280, 304, 577, 644, 727, 807
Mox20I	TGGCCA	1 cut(s)	837
MscI	TGGCCA	1 cut(s)	837
MseI	TTAA	3 cut(s)	83, 504, 710
Msp20I	TGGCCA	1 cut(s)	837
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	3 cut(s)	612, 625, 667
MspR9I	CCNGG	4 cut(s)	138, 613, 626, 668
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	680
NciI	CCSGG	3 cut(s)	613, 626, 668
NcoI	CCATGG	2 cut(s)	401, 567
NdeI	CATATG	1 cut(s)	526
NdeII	GATC	8 cut(s)	217, 228, 294, 345, 734, 758, 823, 869
NlaIII	CATG	6 cut(s)	201, 405, 571, 734, 799, 821
NlaIV	GGNNCC	1 cut(s)	684
NmuCI	GTSAC	3 cut(s)	160, 313, 892
NspI	RCATGY	1 cut(s)	821
PaeI	GCATGC	1 cut(s)	821
PfeI	GAWTC	2 cut(s)	416, 494
PkrI	GCNGC	7 cut(s)	240, 283, 328, 342, 676, 679, 682
Ple19I	CGATCG	1 cut(s)	761
PleI	GAGTC	1 cut(s)	127
PmaCI	CACGTG	1 cut(s)	188
PmlI	CACGTG	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	127
Ppu21I	YACGTR	1 cut(s)	188
PpuMI	RGGWCCY	1 cut(s)	586
Psp5II	RGGWCCY	1 cut(s)	586
Psp6I	CCWGG	1 cut(s)	136
PspCI	CACGTG	1 cut(s)	188
PspEI	GGTNACC	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	684
PspPI	GGNCC	3 cut(s)	398, 586, 682
PspPPI	RGGWCCY	1 cut(s)	586
PstI	CTGCAG	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	698
PsuI	RGATCY	2 cut(s)	734, 869
PvuI	CGATCG	1 cut(s)	761
PvuII	CAGCTG	1 cut(s)	329
SaqAI	TTAA	3 cut(s)	83, 504, 710
SatI	GCNGC	7 cut(s)	239, 282, 327, 341, 675, 678, 681
Sau3AI	GATC	8 cut(s)	217, 228, 294, 345, 734, 758, 823, 869
Sau96I	GGNCC	3 cut(s)	398, 586, 682
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	4 cut(s)	138, 613, 626, 668
SduI	GDGCHC	2 cut(s)	144, 803
SfaNI	GCATC	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	586
SmlI	CTYRAG	2 cut(s)	72, 593
SmoI	CTYRAG	2 cut(s)	72, 593
SphI	GCATGC	1 cut(s)	821
Sse9I	AATT	3 cut(s)	255, 620, 641
SsiI	CCGC	1 cut(s)	680
SspMI	CTAG	3 cut(s)	167, 722, 827
StyD4I	CCNGG	4 cut(s)	136, 611, 624, 666
StyI	CCWWGG	2 cut(s)	401, 567
TaaI	ACNGT	1 cut(s)	560
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	1 cut(s)	660
TasI	AATT	3 cut(s)	255, 620, 641
TauI	GCSGC	1 cut(s)	683
TfiI	GAWTC	2 cut(s)	416, 494
Tru1I	TTAA	3 cut(s)	83, 504, 710
Tru9I	TTAA	3 cut(s)	83, 504, 710
TscAI	CASTG	2 cut(s)	355, 652
TseFI	GTSAC	3 cut(s)	160, 313, 892
TseI	GCWGC	6 cut(s)	238, 281, 326, 340, 674, 677
Tsp45I	GTSAC	3 cut(s)	160, 313, 892
TspDTI	ATGAA	4 cut(s)	193, 534, 633, 784
TspGWI	ACGGA	2 cut(s)	857, 876
TspRI	CASTG	2 cut(s)	355, 652
VpaK11BI	GGWCC	1 cut(s)	586
XapI	RAATTY	2 cut(s)	620, 641
XceI	RCATGY	1 cut(s)	821
XspI	CTAG	3 cut(s)	167, 722, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.