Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005588

Physical Location & Seq

Genomic Coordinates Forward (+)

38779443 .. 38779787

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00113260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGTAACCACATTTGGAATGTCCGACATTGGCCCATGGTCATTGATGGATTCAGCTCAGAGTGGTGATGTCATAATGAGAATGATGGCAAGGAACTCAATGTCAGAAAAGCTTGCTGAAGACATTGATTCTGCTATTAAGAGATTATCTGATGAAGCATATGAGATTGCATTGAGCCACATAAGAAACAACCGTGAAGCCATGGACAAGATAGTGGAGGTCCTTCTTGAGAAGGAAACAATGACTGGGGATGAATTCCGGGCAATCCTCTCTGAATTCACTGAAATCCCAGTCGAAAACCGGGTTGCTGCTGCGGCCCCTACTCTCCAGTCGCTGTTTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009657 GO:0009658 GO:0009668 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009892 GO:0009941 GO:0009987 GO:0010027 GO:0010033 GO:0010109 GO:0010205 GO:0010206 GO:0010304 GO:0015979 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019684 GO:0022607 GO:0030091 GO:0030163 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0042221 GO:0042548 GO:0042623 GO:0042651 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048564 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0061024 GO:0065003 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0072593 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

114

Amino Acids

12.79

Weight (kDa)

4.58

Isoelectric Point (pI)

50.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M41	PF01434	1 - 89	7.7e-21	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06430 AT1G06430 AT1G06430 AT2G30950 AT2G30950 AT2G30950 AT2G30950
fragaria_vesca	FvH4_6g27780 FvH4_6g27780 FvH4_6g27780
malus_domestica	MD09G1234500.v1.1 MD17G1263600.v1.1
prunus_persica	Prupe.3G112700_v2.0.a1 Prupe.3G112700_v2.0.a1
pyrus_communis	pycom09g15280 pycom17g26380
rosa_chinensis	RchiOBHm_Chr2g0131061
rosa_roxburghii	Rroxscaffold_2G00113260
rosa_samantha	Rh2AG347000 Rh2AG479700 Rh2BG354500 Rh2BG461700 Rh2CG333000 Rh2DG372500 Rh2DG470900
rosa_wichuraiana	Rw2G028140 Rw2G028180 Rw4G004930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	314
AcsI	RAATTY	2 cut(s)	254, 275
AcuI	CTGAAG	1 cut(s)	138
AluBI	AGCT	2 cut(s)	56, 112
AluI	AGCT	2 cut(s)	56, 112
AlwNI	CAGNNNCTG	1 cut(s)	334
AoxI	GGCC	2 cut(s)	31, 315
ApeKI	GCWGC	2 cut(s)	308, 311
ApoI	RAATTY	2 cut(s)	254, 275
AspS9I	GGNCC	3 cut(s)	32, 220, 316
AsuC2I	CCSGG	2 cut(s)	260, 302
AsuHPI	GGTGA	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	295, 298
BccI	CCATC	2 cut(s)	40, 79
BcnI	CCSGG	2 cut(s)	260, 302
BisI	GCNGC	3 cut(s)	309, 312, 315
BlsI	GCNGC	3 cut(s)	310, 313, 316
Bme1390I	CCNGG	2 cut(s)	260, 302
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	3 cut(s)	32, 220, 316
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	2 cut(s)	260, 302
BmrI	ACTGGG	2 cut(s)	255, 284
BmuI	ACTGGG	2 cut(s)	255, 284
BpiI	GAAGAC	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	2 cut(s)	260, 302
BsaJI	CCNNGG	2 cut(s)	35, 201
Bse1I	ACTGG	3 cut(s)	250, 290, 328
BseDI	CCNNGG	2 cut(s)	35, 201
BseGI	GGATG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	3 cut(s)	250, 290, 328
BseXI	GCAGC	2 cut(s)	295, 298
BshFI	GGCC	2 cut(s)	33, 317
BsiSI	CCGG	2 cut(s)	259, 301
BsnI	GGCC	2 cut(s)	33, 317
Bsp19I	CCATGG	2 cut(s)	35, 201
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	2 cut(s)	33, 317
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	318
BsrI	ACTGG	3 cut(s)	250, 290, 328
BssECI	CCNNGG	2 cut(s)	35, 201
BssT1I	CCWWGG	2 cut(s)	35, 201
Bst4CI	ACNGT	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	57
BstDSI	CCRYGG	2 cut(s)	35, 201
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	1 cut(s)	256
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	2 cut(s)	258, 300
BstV1I	GCAGC	2 cut(s)	295, 298
BstV2I	GAAGAC	1 cut(s)	126
BsuRI	GGCC	2 cut(s)	33, 317
BtgI	CCRYGG	2 cut(s)	35, 201
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	114
CaiI	CAGNNNCTG	1 cut(s)	334
Cfr13I	GGNCC	3 cut(s)	32, 220, 316
CviAII	CATG	2 cut(s)	36, 202
CviJI	RGCY	6 cut(s)	33, 56, 112, 177, 200, 317
CviKI_1	RGCY	6 cut(s)	33, 56, 112, 177, 200, 317
DdeI	CTNAG	1 cut(s)	57
Eco130I	CCWWGG	2 cut(s)	35, 201
Eco47I	GGWCC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	138
Eco91I	GGTNACC	1 cut(s)	4
EcoO109I	RGGNCCY	1 cut(s)	220
EcoO65I	GGTNACC	1 cut(s)	4
EcoRI	GAATTC	2 cut(s)	254, 275
EcoT14I	CCWWGG	2 cut(s)	35, 201
ErhI	CCWWGG	2 cut(s)	35, 201
FaeI	CATG	2 cut(s)	39, 205
FaiI	YATR	6 cut(s)	37, 74, 160, 162, 182, 203
FatI	CATG	2 cut(s)	35, 201
FauNDI	CATATG	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	309, 312, 315
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	3 cut(s)	309, 312, 315
GluI	GCNGC	3 cut(s)	309, 312, 315
GsuI	CTGGAG	1 cut(s)	311
HaeIII	GGCC	2 cut(s)	33, 317
HapII	CCGG	2 cut(s)	259, 301
Hin1II	CATG	2 cut(s)	39, 205
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	2 cut(s)	50, 128
HpaII	CCGG	2 cut(s)	259, 301
HphI	GGTGA	1 cut(s)	77
Hpy188I	TCNGA	5 cut(s)	25, 60, 106, 151, 274
Hpy188III	TCNNGA	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	226, 233
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4V	TGCA	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	39, 205
LpnPI	CCDG	5 cut(s)	231, 272, 303, 314, 341
Lsp1109I	GCAGC	2 cut(s)	295, 298
MaeIII	GTNAC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	131
MluCI	AATT	2 cut(s)	254, 275
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	2 cut(s)	211, 278
MseI	TTAA	1 cut(s)	138
MspI	CCGG	2 cut(s)	259, 301
MspR9I	CCNGG	2 cut(s)	260, 302
MwoI	GCNNNNNNNGC	1 cut(s)	314
NciI	CCSGG	2 cut(s)	260, 302
NcoI	CCATGG	2 cut(s)	35, 201
NdeI	CATATG	1 cut(s)	160
NlaIII	CATG	2 cut(s)	39, 205
NlaIV	GGNNCC	1 cut(s)	318
PfeI	GAWTC	2 cut(s)	50, 128
PkrI	GCNGC	3 cut(s)	310, 313, 316
PpuMI	RGGWCCY	1 cut(s)	220
Psp5II	RGGWCCY	1 cut(s)	220
PspEI	GGTNACC	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	3 cut(s)	32, 220, 316
PspPPI	RGGWCCY	1 cut(s)	220
PstNI	CAGNNNCTG	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	3 cut(s)	309, 312, 315
Sau96I	GGNCC	3 cut(s)	32, 220, 316
ScrFI	CCNGG	2 cut(s)	260, 302
SetI	ASST	4 cut(s)	58, 114, 222, 344
SinI	GGWCC	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	2 cut(s)	254, 275
SsiI	CCGC	1 cut(s)	314
StyD4I	CCNGG	2 cut(s)	258, 300
StyI	CCWWGG	2 cut(s)	35, 201
TaaI	ACNGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	294
TasI	AATT	2 cut(s)	254, 275
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	2 cut(s)	50, 128
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	2 cut(s)	308, 311
TspDTI	ATGAA	2 cut(s)	168, 267
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	2 cut(s)	254, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.