FvH4_6g30140

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006290
Physical Location & Seq
Reverse (-)
23288329 .. 23291301
2973 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30140.t1

Sequence Viewer

Length: 1578 bp
ATGTCACTTAAATCTCTTGCCCCAAAATCCAAAACCCTCCACTCTTTCTTCAACTCTCTTCTCCGACCCACCAAACCCAACACCCCCTTCCACCCTTTCTCTTCTCTCACCCACCAAACCCCACCATCTCCACAACTACCTCACCTGGTCAACGAAATCTCACGCATTCTCAGCGACCACAGAGACCCTCACCACGACTTGGAGCTCTCCCTCAGCTCTTGGTCCATCCAAATATCACCGAACTTGGTTGAACAGGTTCTGAAACGCTGCAAGAATCTTGGGTTTTCAGCCCACAGATTCTTCCTCTGGGCTAAAACAGTTCCGGGTTTTCAACACAGTGATGAAAGCCATCACATTTTGATTGACATTTTGGGGAGTAGTGGTCAGTTTGCATTGTTGTGGGATTTTCTCATTGAAATGAGAGAGTCCAAGTGCTGTGAGATTGGCCCAGAGTTATTCTGGGTTATTTTTAGAGTTTACAGTAGAGCTAATTTGCCTCGAGATGCGATTCGAGCTTATAGTAGAATGGTTGAGTTTGGAATTAAGCCTAGTATTCATGATCTTGATCATCTTCTATATACATTATGTAAAAGAAAGCATGTCAAGCATGCTCAGGAGTTTTTTGATAAAGTTAAGAGCGGGTTTGAGTTGGGTGCGAAGACTTATAGCATTTTGATGAGGGGTTGGGGAGACATTTGTGATTCGGATAATGCACGCAAGCTGTTTGATGAAATGACTGAGAAAGGGTGTTTGGTGGATGTGCCTGCGTATAATAGTTATTTGGAGGCTTTGTGTAAAGGTGGAAATGTCGATGAGGCTTATAAGATATTTCGCGAGATGGGTTCAAAAGGAGTTGAGCCAGATGCTGGTACATACTCGATTTTCATTCGGGCATATTGTGAAGCAAATGATATTCATTCGGTTTTTAGTGTGCTTGATAGAATGAAGAGATATAATCTTTTGGCTAATGTGTTTACATACAATTGTGTTATCAAGAAACTCTGTAAGAATGAAAGGGTGGAAGAGGCGTACCAGCTTTTGGATGAAATGATCGAAATGGGAGTTAAGCCAGATGAATGGAGTTACAATGCAATCCAAGCTTATCATTGTGAGCATGGTGAAGTTAATCAGGCTCTGAGGTTGTTATCTAGAATGGAAAAAGATAGCTGCATGCCTGATCATCATACTTACAATATGGTACTAAAGTTGCTGATTAGAATCGGGAGATTTGATAGGGCAACTGATGTGTGGGAGAGAATGGGGAAGAGAGGGTTTTATCCTTCTGTTTCAACTTATTCTGTCATGATTCATGGTTTGTGCAAGAAGAAACATAAACTAGAGGAGGCTTGTAAATACTTTGAGATAATGATTGATGAAGGTATACCACCATACTCTTCTACTGTTGAGATGTTGAGAAACCGGCTATTAGGTTTGGGGCTACTCGATGATATTGAAATACTTGCTCGTAAGATGGAGCAAAGCAGTTCTTGTTCAACACAAGAGTTTGCAAAAGTGCTGAGAGGGAATAAAGCTTCTGTAAGATCTAGAAGTGAGGAAACTGACATTGAAAGTGATTGA

Protein Analysis

526

Amino Acids

60.48

Weight (kDa)

7.07

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 167 - 316 7.6e-09 Pentacotripeptide-repeat region of PRORP
PPR_long PF17177 235 - 385 4.8e-13 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 240 - 299 1.4e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 248 - 280 7.5e-08 PPR repeat
PPR_2 PF13041 253 - 300 1.4e-15 PPR repeat family
PPR PF01535 256 - 285 1.3e-06 PPR repeat
PPR_3 PF13812 275 - 334 5e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 283 - 316 9.3e-07 PPR repeat
PPR_2 PF13041 295 - 336 1.9e-09 PPR repeat family
PPR_1 PF12854 320 - 350 4.2e-11 PPR repeat
PPR_2 PF13041 323 - 364 4.2e-14 PPR repeat family
PPR PF01535 325 - 355 4.1e-08 PPR repeat
PPR_3 PF13812 346 - 403 7.7e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 361 - 404 2.4e-10 PPR repeat family
PPR_2 PF13041 396 - 441 4.7e-13 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 822
AccB7I CCANNNNNTGG 3 cut(s) 199, 866, 1039
AccBSI CCGCTC 1 cut(s) 639
AccI GTMKAC 1 cut(s) 1381
AccII CGCG 1 cut(s) 834
AciI CCGC 1 cut(s) 639
AfaI GTAC 3 cut(s) 871, 1031, 1200
AfiI CCNNNNNNNGG 3 cut(s) 199, 866, 1039
AgsI TTSAA 9 cut(s) 52, 251, 332, 416, 846, 1290, 1454, 1494, 1568
AjnI CCWGG 1 cut(s) 144
AjuI GAANNNNNNNTTGG 4 cut(s) 71, 103, 734, 766
AluBI AGCT 9 cut(s) 205, 216, 488, 515, 721, 1036, 1100, 1167, 1532
AluI AGCT 9 cut(s) 205, 216, 488, 515, 721, 1036, 1100, 1167, 1532
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 2 cut(s) 177, 684
AlwNI CAGNNNCTG 3 cut(s) 259, 866, 1135
Ama87I CYCGRG 1 cut(s) 498
AoxI GGCC 1 cut(s) 445
ApeKI GCWGC 2 cut(s) 267, 1167
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 2 cut(s) 222, 446
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 5 cut(s) 100, 134, 182, 228, 1130
AvaI CYCGRG 1 cut(s) 498
AvaII GGWCC 1 cut(s) 222
BaeI ACNNNNGTAYC 2 cut(s) 1190, 1223
BanII GRGCYC 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 665
Bbv12I GWGCWC 1 cut(s) 207
BbvCI CCTCAGC 1 cut(s) 212
BbvI GCAGC 2 cut(s) 254, 1154
BccI CCATC 5 cut(s) 133, 233, 357, 832, 1465
BciT130I CCWGG 1 cut(s) 146
BclI TGATCA 2 cut(s) 565, 1177
BcnI CCSGG 1 cut(s) 324
BcoDI GTCTC 2 cut(s) 177, 684
BfaI CTAG 4 cut(s) 549, 1149, 1337, 1545
BglII AGATCT 1 cut(s) 1541
BisI GCNGC 2 cut(s) 268, 1168
BlsI GCNGC 2 cut(s) 269, 1169
Bme1390I CCNGG 2 cut(s) 146, 324
Bme18I GGWCC 1 cut(s) 222
BmeT110I CYCGRG 1 cut(s) 498
BmgT120I GGNCC 2 cut(s) 222, 446
BmrFI CCNGG 2 cut(s) 146, 324
BmsI GCATC 2 cut(s) 493, 853
BpiI GAAGAC 1 cut(s) 665
Bpu10I CCTNAGC 2 cut(s) 212, 612
BpuMI CCSGG 1 cut(s) 324
BsaBI GATNNNNATC 2 cut(s) 564, 1217
BsaI GGTCTC 1 cut(s) 177
BsaXI ACNNNNNCTCC 4 cut(s) 367, 397, 776, 806
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 866, 1039
Bse118I RCCGGY 1 cut(s) 1419
Bse8I GATNNNNATC 2 cut(s) 564, 1217
BseBI CCWGG 1 cut(s) 146
BseGI GGATG 3 cut(s) 225, 763, 1048
BseJI GATNNNNATC 2 cut(s) 564, 1217
BseLI CCNNNNNNNGG 3 cut(s) 199, 866, 1039
BseMII CTCAG 6 cut(s) 184, 226, 626, 729, 1127, 1508
BseRI GAGGAG 1 cut(s) 1355
BseXI GCAGC 2 cut(s) 254, 1154
Bsh1236I CGCG 1 cut(s) 834
BshFI GGCC 1 cut(s) 447
BsiHKAI GWGCWC 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 498
BsiSI CCGG 2 cut(s) 323, 1420
BslI CCNNNNNNNGG 3 cut(s) 199, 866, 1039
BsmAI GTCTC 2 cut(s) 177, 684
BsmI GAATGC 1 cut(s) 165
BsnI GGCC 1 cut(s) 447
Bso31I GGTCTC 1 cut(s) 177
BsoBI CYCGRG 1 cut(s) 498
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 5 cut(s) 559, 565, 1050, 1177, 1541
Bsp68I TCGCGA 1 cut(s) 834
BspACI CCGC 1 cut(s) 639
BspANI GGCC 1 cut(s) 447
BspCNI CTCAG 6 cut(s) 183, 225, 625, 730, 1128, 1509
BspFNI CGCG 1 cut(s) 834
BspHI TCATGA 2 cut(s) 556, 1302
BspTNI GGTCTC 1 cut(s) 177
BsrBI CCGCTC 1 cut(s) 639
BsrFI RCCGGY 1 cut(s) 1419
BssAI RCCGGY 1 cut(s) 1419
BssMI GATC 5 cut(s) 559, 565, 1050, 1177, 1541
BssNAI GTATAC 1 cut(s) 1382
Bst1107I GTATAC 1 cut(s) 1382
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 4 cut(s) 319, 338, 482, 1402
Bst6I CTCTTC 6 cut(s) 63, 106, 941, 1017, 1259, 1399
BstC8I GCNNGC 5 cut(s) 609, 715, 719, 765, 1172
BstDEI CTNAG 6 cut(s) 170, 212, 612, 738, 1136, 1517
BstF5I GGATG 3 cut(s) 225, 763, 1048
BstFNI CGCG 1 cut(s) 834
BstKTI GATC 5 cut(s) 562, 568, 1053, 1180, 1544
BstMAI GTCTC 2 cut(s) 177, 684
BstMBI GATC 5 cut(s) 559, 565, 1050, 1177, 1541
BstMWI GCNNNNNNNGC 4 cut(s) 171, 512, 604, 1097
BstNI CCWGG 1 cut(s) 146
BstNSI RCATGY 3 cut(s) 602, 611, 1174
BstSCI CCNGG 2 cut(s) 144, 322
BstUI CGCG 1 cut(s) 834
BstV1I GCAGC 2 cut(s) 254, 1154
BstV2I GAAGAC 1 cut(s) 665
BstX2I RGATCY 1 cut(s) 1541
BstXI CCANNNNNNTGG 1 cut(s) 1077
BstYI RGATCY 1 cut(s) 1541
BstZ17I GTATAC 1 cut(s) 1382
BsuRI GGCC 1 cut(s) 447
BtsCI GGATG 3 cut(s) 225, 763, 1048
BtsIMutI CAGTG 1 cut(s) 343
BtuMI TCGCGA 1 cut(s) 834
Cac8I GCNNGC 5 cut(s) 609, 715, 719, 765, 1172
CaiI CAGNNNCTG 3 cut(s) 259, 866, 1135
CciI TCATGA 2 cut(s) 556, 1302
Cfr10I RCCGGY 1 cut(s) 1419
Cfr13I GGNCC 2 cut(s) 222, 446
CsiI ACCWGGT 1 cut(s) 144
Csp6I GTAC 3 cut(s) 870, 1030, 1199
CviAII CATG 7 cut(s) 557, 599, 608, 1115, 1171, 1303, 1310
CviQI GTAC 3 cut(s) 870, 1030, 1199
DdeI CTNAG 6 cut(s) 170, 212, 612, 738, 1136, 1517
DpnI GATC 5 cut(s) 561, 567, 1052, 1179, 1543
DpnII GATC 5 cut(s) 559, 565, 1050, 1177, 1541
Eam1104I CTCTTC 6 cut(s) 63, 106, 941, 1017, 1259, 1399
EarI CTCTTC 6 cut(s) 63, 106, 941, 1017, 1259, 1399
Ecl136II GAGCTC 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 207
Eco31I GGTCTC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 498
EcoICRI GAGCTC 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 207
FaeI CATG 7 cut(s) 560, 602, 611, 1118, 1174, 1306, 1313
FalI AAGNNNNNCTT 2 cut(s) 1471, 1503
FatI CATG 7 cut(s) 556, 598, 607, 1114, 1170, 1302, 1309
FauI CCCGC 1 cut(s) 632
FbaI TGATCA 2 cut(s) 565, 1177
FblI GTMKAC 1 cut(s) 1381
Fnu4HI GCNGC 2 cut(s) 268, 1168
FokI GGATG 3 cut(s) 212, 770, 1055
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 2 cut(s) 268, 1168
FspBI CTAG 4 cut(s) 549, 1149, 1337, 1545
GluI GCNGC 2 cut(s) 268, 1168
HaeIII GGCC 1 cut(s) 447
HapII CCGG 2 cut(s) 323, 1420
Hin1II CATG 7 cut(s) 560, 602, 611, 1118, 1174, 1306, 1313
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HindIII AAGCTT 2 cut(s) 1098, 1530
HinfI GANTC 7 cut(s) 274, 297, 425, 508, 701, 1218, 1306
HpaII CCGG 2 cut(s) 323, 1420
HphI GGTGA 5 cut(s) 100, 134, 182, 228, 1130
Hpy166II GTNNAC 4 cut(s) 151, 478, 975, 1382
Hpy188I TCNGA 4 cut(s) 65, 261, 706, 1137
Hpy8I GTNNAC 4 cut(s) 151, 478, 975, 1382
HpyAV CCTTC 3 cut(s) 97, 1290, 1370
HpyCH4III ACNGT 4 cut(s) 319, 338, 482, 1402
HpyCH4V TGCA 7 cut(s) 270, 392, 713, 1091, 1170, 1320, 1508
HpyF10VI GCNNNNNNNGC 4 cut(s) 171, 512, 604, 1097
HpyF3I CTNAG 6 cut(s) 170, 212, 612, 738, 1136, 1517
Hsp92II CATG 7 cut(s) 560, 602, 611, 1118, 1174, 1306, 1313
Ksp22I TGATCA 2 cut(s) 565, 1177
Kzo9I GATC 5 cut(s) 559, 565, 1050, 1177, 1541
LmnI GCTCC 2 cut(s) 202, 1474
Lsp1109I GCAGC 2 cut(s) 254, 1154
LweI GCATC 2 cut(s) 493, 853
MabI ACCWGGT 1 cut(s) 144
MaeI CTAG 4 cut(s) 549, 1149, 1337, 1545
MaeIII GTNAC 2 cut(s) 3, 1082
MalI GATC 5 cut(s) 561, 567, 1052, 1179, 1543
MbiI CCGCTC 1 cut(s) 639
MboI GATC 5 cut(s) 559, 565, 1050, 1177, 1541
MfeI CAATTG 1 cut(s) 982
MflI RGATCY 1 cut(s) 1541
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 3 cut(s) 490, 540, 982
MlyI GAGTC 1 cut(s) 434
MmeI TCCRAC 1 cut(s) 88
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 5 cut(s) 9, 543, 633, 1065, 1125
MslI CAYNNNNRTG 4 cut(s) 339, 397, 416, 674
MspI CCGG 2 cut(s) 323, 1420
MspR9I CCNGG 2 cut(s) 146, 324
MunI CAATTG 1 cut(s) 982
Mva1269I GAATGC 1 cut(s) 165
MvaI CCWGG 1 cut(s) 146
MvnI CGCG 1 cut(s) 834
MwoI GCNNNNNNNGC 4 cut(s) 171, 512, 604, 1097
NciI CCSGG 1 cut(s) 324
NdeII GATC 5 cut(s) 559, 565, 1050, 1177, 1541
NlaIII CATG 7 cut(s) 560, 602, 611, 1118, 1174, 1306, 1313
NmuCI GTSAC 1 cut(s) 3
NruI TCGCGA 1 cut(s) 834
NspI RCATGY 3 cut(s) 602, 611, 1174
PaeI GCATGC 2 cut(s) 611, 1174
PaeR7I CTCGAG 1 cut(s) 498
PagI TCATGA 2 cut(s) 556, 1302
PctI GAATGC 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 6 cut(s) 274, 297, 508, 701, 1218, 1306
PflMI CCANNNNNTGG 3 cut(s) 199, 866, 1039
PkrI GCNGC 2 cut(s) 269, 1169
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
PsiI TTATAA 1 cut(s) 822
Psp124BI GAGCTC 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspPI GGNCC 2 cut(s) 222, 446
PstNI CAGNNNCTG 3 cut(s) 259, 866, 1135
PsuI RGATCY 1 cut(s) 1541
RruI TCGCGA 1 cut(s) 834
RsaI GTAC 3 cut(s) 871, 1031, 1200
RsaNI GTAC 3 cut(s) 870, 1030, 1199
RseI CAYNNNNRTG 4 cut(s) 339, 397, 416, 674
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 5 cut(s) 9, 543, 633, 1065, 1125
SatI GCNGC 2 cut(s) 268, 1168
Sau3AI GATC 5 cut(s) 559, 565, 1050, 1177, 1541
Sau96I GGNCC 2 cut(s) 222, 446
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 2 cut(s) 146, 324
SduI GDGCHC 1 cut(s) 207
SexAI ACCWGGT 1 cut(s) 144
SfaNI GCATC 2 cut(s) 493, 853
Sfr274I CTCGAG 1 cut(s) 498
SinI GGWCC 1 cut(s) 222
SlaI CTCGAG 1 cut(s) 498
SmiMI CAYNNNNRTG 4 cut(s) 339, 397, 416, 674
SmlI CTYRAG 1 cut(s) 498
SmoI CTYRAG 1 cut(s) 498
SphI GCATGC 2 cut(s) 611, 1174
Sse9I AATT 3 cut(s) 490, 540, 982
SsiI CCGC 1 cut(s) 639
SspMI CTAG 4 cut(s) 549, 1149, 1337, 1545
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 144, 322
TaaI ACNGT 4 cut(s) 319, 338, 482, 1402
TaqI TCGA 6 cut(s) 499, 511, 810, 878, 1053, 1443
TasI AATT 3 cut(s) 490, 540, 982
TfiI GAWTC 6 cut(s) 274, 297, 508, 701, 1218, 1306
Tru1I TTAA 5 cut(s) 9, 543, 633, 1065, 1125
Tru9I TTAA 5 cut(s) 9, 543, 633, 1065, 1125
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 2 cut(s) 267, 1167
Tsp45I GTSAC 1 cut(s) 3
TspRI CASTG 1 cut(s) 343
Van91I CCANNNNNTGG 3 cut(s) 199, 866, 1039
VpaK11BI GGWCC 1 cut(s) 222
XbaI TCTAGA 2 cut(s) 1148, 1544
XceI RCATGY 3 cut(s) 602, 611, 1174
XcmI CCANNNNNNNNNTGG 1 cut(s) 456
XhoI CTCGAG 1 cut(s) 498
XmiI GTMKAC 1 cut(s) 1381
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 4 cut(s) 549, 1149, 1337, 1545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.