Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001998.1

Orthogroup ID

OG0006290

Physical Location & Seq

Genomic Coordinates Forward (+)

133502 .. 135690

Gene Structure 2189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001998.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2106 bp

atgtcacttagatctctcacccttaaacccaaaaccctccactctttcttcaaccctcttctccgacccaccaaacccaacactcccttccgccctttctcttctctcacccaccaaaacccaccatctccacaattacctcacctggtcaacgaaatctcacgcattctcagcgaccacagaaaccctcaccacgacttggagctttccctcaactcttggtccacccaaatatcccctaacttggttgaacaggttctgaaacgctgcaaaaatcttgggttttcagcccacagattctttctctgggctaaaaaaattccgggttttcaacacagtggtgaaagccatcacattttgattgatatcttggggagtagtggtcagtttgctctgttgtgggattttctcattgaaatgagagagtccaagtgttgtgagattagcccagaattgttctgggttatttttagagtttacagtagagctaatttgcctcgtgatgcgattcgagcttttaatagaatggttgagtttggagtcaagcctagtgtgcatgatcttgatcagcttctctatacattatgtaaaagaaagcatgtcaagcatgcccaggagttttttgataaagttaagagtgggtttgagttgggtgctaaaacttatagcattttgatgaggggttggggagacatttgtgattcggataatgcacgcaagctgttcgatgaaatgactgaaagagggtgtttggtggatgtgcctgcatataatagttatttggaggctttgtgtaaaggtggcaatgtggatgaggcttataagatatttcgggcgatgggttcaaaaggagttgagcccgatgctggtacatactcgattttcattcgggcatattgtgaagcgaatgatattcattcggtttttagcgtgcttgataggatgaagagatataatcttttgcctaatgtgtattcttacaattgtatcatcaagaagctgtgtaagaatgaaaaggtggaagaggcgtaccaacttttggatgaaatgattgaaatgggagttaagccggatgaatggagttacaatgcaatccaagcttatcattgtgaccattgtgaagttaatcaggctcttaggttgttatctagaatggaaaaagataactgcatgccagatcggcatacctacaatatggtactaaagttgctgatcaggattggaagatttgatagggcaactgaagtgtgggagagtatggggaggagaggcttttatccttctgtttcaacatattctgtcatgattcatggtttgtgcaaaaagaaacaaaaactagaggaggcatgtaaatactttgagataatgattgatgaaggagttgagccagatgctggtacatactcgattttcgttcgggcatattgtgaagcgaatgatattcattcggtttttagcgtgcttgataggatgaagagatataatcttttgcctaatgtgtattcttacaattgtatcatcaagaagctgtgtaagaatgaaaaggtggaagaggcgtaccaacttttggatgaaatgattgaaatgggagttaagccggatgaatggagttacaatgcaatccaagcttatcattgtgagcattgtgaagttaatcaggctcttaggttgttatctagaatggaaaaagatagctgcatgccagatcggcatacttacaatatggtactaaagttgctgatcaggatcggaagatttgatagggcaactgaagtgtgggagagtatggggaagagaggcttttatccttctgtttcaacatattctgtcatgattcatggtttgtgcaaaaagaaacacaaactagaggaggcatgtaaatactttgagataatgattgatgaaggtataccaccatactcttctactgtggagatgttgagaaaccggcttttgggtttggggctacttgatgacattgaaatacttgctagtaagatggagcaaagtacttcttgctcgatacaagagtttgcaaaagtgctgagagggaacaaagcttctgtaagatcgagaagtgagtacactgacattgaaagtgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

701

Amino Acids

81.3

Weight (kDa)

7.72

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52640
fragaria_vesca	FvH4_6g30140 FvH4_6g30140 FvH4_6g30140 FvH4_6g30140 FvH4_6g30140
malus_domestica	MD17G1208000.v1.1
prunus_persica	Prupe.3G082300_v2.0.a1 Prupe.3G082300_v2.0.a1
pyrus_communis	pycom17g21050
rosa_chinensis	RchiOBHm_Chr2g0136191 RchiOBHm_Chr2g0136301 RchiOBHm_Chr2g0136351
rosa_laevigata	RLG00000019513 RLG00000019521
rosa_multiflora	Rmu_sc0001998.1_g000030 Rmu_sc0002070.1_g000029
rosa_roxburghii	Rroxscaffold_2G00108380
rosa_rugosa	Rorug02G0328900 Rorug02G0329100 Rorug02G0329200
rosa_samantha	Rh2AG380400 Rh2AG380700 Rh2BG387500 Rh2CG366500 Rh2DG403700
rosa_wichuraiana	Rw2G031130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	822
AccB7I	CCANNNNNTGG	4 cut(s)	199, 1039, 1394, 1567
AccI	GTMKAC	1 cut(s)	1909
AciI	CCGC	1 cut(s)	91
AclWI	GGATC	1 cut(s)	1754
AcsI	RAATTY	1 cut(s)	318
AcuI	CTGAAG	2 cut(s)	1263, 1791
AfaI	GTAC	8 cut(s)	871, 1031, 1200, 1399, 1559, 1728, 2011, 2084
AfiI	CCNNNNNNNGG	7 cut(s)	199, 244, 866, 1039, 1394, 1567, 1954
AjnI	CCWGG	2 cut(s)	144, 612
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AleI	CACNNNNGTG	1 cut(s)	339
Alw26I	GTCTC	1 cut(s)	684
AlwI	GGATC	1 cut(s)	1754
AlwNI	CAGNNNCTG	2 cut(s)	259, 1394
ApeKI	GCWGC	2 cut(s)	267, 1695
ApoI	RAATTY	1 cut(s)	318
Asp700I	GAANNNNTTC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	222
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	5 cut(s)	10, 100, 134, 182, 353
AvaII	GGWCC	1 cut(s)	222
BanII	GRGCYC	1 cut(s)	861
BauI	CACGAG	1 cut(s)	498
BbvI	GCAGC	2 cut(s)	254, 1682
BccI	CCATC	4 cut(s)	133, 357, 832, 1993
BcgI	CGANNNNNNTGC	2 cut(s)	706, 740
BciT130I	CCWGG	2 cut(s)	146, 614
BclI	TGATCA	3 cut(s)	565, 1212, 1740
BcnI	CCSGG	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	684
BfaI	CTAG	6 cut(s)	549, 1149, 1337, 1677, 1865, 1992
BglI	GCCNNNNNGGC	2 cut(s)	1180, 1708
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	2 cut(s)	268, 1696
BlsI	GCNGC	2 cut(s)	269, 1697
BmcAI	AGTACT	1 cut(s)	2011
Bme1390I	CCNGG	3 cut(s)	146, 324, 614
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	222
BmrFI	CCNGG	3 cut(s)	146, 324, 614
BmsI	GCATC	3 cut(s)	493, 853, 1381
BpuMI	CCSGG	1 cut(s)	324
BsaBI	GATNNNNATC	3 cut(s)	365, 564, 1745
BsaJI	CCNNGG	1 cut(s)	612
BsaXI	ACNNNNNCTCC	4 cut(s)	367, 397, 776, 806
Bsc4I	CCNNNNNNNGG	7 cut(s)	199, 244, 866, 1039, 1394, 1567, 1954
Bse118I	RCCGGY	1 cut(s)	1947
Bse3DI	GCAATG	1 cut(s)	811
Bse8I	GATNNNNATC	3 cut(s)	365, 564, 1745
BseBI	CCWGG	2 cut(s)	146, 614
BseDI	CCNNGG	1 cut(s)	612
BseGI	GGATG	8 cut(s)	763, 817, 948, 1048, 1078, 1476, 1576, 1606
BseJI	GATNNNNATC	3 cut(s)	365, 564, 1745
BseLI	CCNNNNNNNGG	7 cut(s)	199, 244, 866, 1039, 1394, 1567, 1954
BseMI	GCAATG	1 cut(s)	811
BseMII	CTCAG	2 cut(s)	184, 2036
BseRI	GAGGAG	3 cut(s)	1279, 1355, 1883
BseXI	GCAGC	2 cut(s)	254, 1682
BsiSI	CCGG	4 cut(s)	323, 1070, 1598, 1948
BslI	CCNNNNNNNGG	7 cut(s)	199, 244, 866, 1039, 1394, 1567, 1954
BsmAI	GTCTC	1 cut(s)	684
BsmI	GAATGC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	861
Bsp143I	GATC	9 cut(s)	11, 559, 565, 1177, 1212, 1705, 1740, 1746, 2069
BspACI	CCGC	1 cut(s)	91
BspCNI	CTCAG	2 cut(s)	183, 2037
BspHI	TCATGA	2 cut(s)	1302, 1830
BspPI	GGATC	1 cut(s)	1754
BsrDI	GCAATG	1 cut(s)	811
BsrFI	RCCGGY	1 cut(s)	1947
BssAI	RCCGGY	1 cut(s)	1947
BssECI	CCNNGG	1 cut(s)	612
BssMI	GATC	9 cut(s)	11, 559, 565, 1177, 1212, 1705, 1740, 1746, 2069
BssNAI	GTATAC	1 cut(s)	1910
BssSI	CACGAG	1 cut(s)	498
Bst1107I	GTATAC	1 cut(s)	1910
Bst2BI	CACGAG	1 cut(s)	498
Bst2UI	CCWGG	2 cut(s)	146, 614
Bst4CI	ACNGT	3 cut(s)	338, 482, 1930
Bst6I	CTCTTC	8 cut(s)	63, 106, 941, 1017, 1469, 1545, 1787, 1927
BstC8I	GCNNGC	8 cut(s)	609, 715, 719, 765, 932, 1172, 1460, 1700
BstDEI	CTNAG	5 cut(s)	8, 170, 1136, 1664, 2045
BstF5I	GGATG	8 cut(s)	763, 817, 948, 1048, 1078, 1476, 1576, 1606
BstKTI	GATC	9 cut(s)	14, 562, 568, 1180, 1215, 1708, 1743, 1749, 2072
BstMAI	GTCTC	1 cut(s)	684
BstMBI	GATC	9 cut(s)	11, 559, 565, 1177, 1212, 1705, 1740, 1746, 2069
BstMWI	GCNNNNNNNGC	8 cut(s)	171, 512, 553, 604, 1097, 1180, 1625, 1708
BstNI	CCWGG	2 cut(s)	146, 614
BstNSI	RCATGY	6 cut(s)	602, 611, 1174, 1350, 1702, 1878
BstSCI	CCNGG	3 cut(s)	144, 322, 612
BstV1I	GCAGC	2 cut(s)	254, 1682
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
BstZ17I	GTATAC	1 cut(s)	1910
BtgZI	GCGATG	1 cut(s)	851
BtsCI	GGATG	8 cut(s)	763, 817, 948, 1048, 1078, 1476, 1576, 1606
BtsIMutI	CAGTG	2 cut(s)	343, 2085
Cac8I	GCNNGC	8 cut(s)	609, 715, 719, 765, 932, 1172, 1460, 1700
CaiI	CAGNNNCTG	2 cut(s)	259, 1394
CciI	TCATGA	2 cut(s)	1302, 1830
Cfr10I	RCCGGY	1 cut(s)	1947
Cfr13I	GGNCC	1 cut(s)	222
CsiI	ACCWGGT	1 cut(s)	144
Csp6I	GTAC	8 cut(s)	870, 1030, 1199, 1398, 1558, 1727, 2010, 2083
CviQI	GTAC	8 cut(s)	870, 1030, 1199, 1398, 1558, 1727, 2010, 2083
DdeI	CTNAG	5 cut(s)	8, 170, 1136, 1664, 2045
DpnI	GATC	9 cut(s)	13, 561, 567, 1179, 1214, 1707, 1742, 1748, 2071
DpnII	GATC	9 cut(s)	11, 559, 565, 1177, 1212, 1705, 1740, 1746, 2069
Eam1104I	CTCTTC	8 cut(s)	63, 106, 941, 1017, 1469, 1545, 1787, 1927
EarI	CTCTTC	8 cut(s)	63, 106, 941, 1017, 1469, 1545, 1787, 1927
EciI	GGCGGA	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	861
Eco32I	GATATC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	222
Eco57I	CTGAAG	2 cut(s)	1263, 1791
EcoRII	CCWGG	2 cut(s)	144, 612
EcoRV	GATATC	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	861
FalI	AAGNNNNNCTT	4 cut(s)	1784, 1816, 1999, 2031
FbaI	TGATCA	3 cut(s)	565, 1212, 1740
FblI	GTMKAC	1 cut(s)	1909
Fnu4HI	GCNGC	2 cut(s)	268, 1696
FokI	GGATG	8 cut(s)	770, 824, 955, 1055, 1085, 1483, 1583, 1613
FriOI	GRGCYC	1 cut(s)	861
Fsp4HI	GCNGC	2 cut(s)	268, 1696
FspBI	CTAG	6 cut(s)	549, 1149, 1337, 1677, 1865, 1992
GluI	GCNGC	2 cut(s)	268, 1696
HapII	CCGG	4 cut(s)	323, 1070, 1598, 1948
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HindIII	AAGCTT	3 cut(s)	1098, 1626, 2058
HinfI	GANTC	7 cut(s)	297, 425, 508, 540, 701, 1306, 1834
HpaII	CCGG	4 cut(s)	323, 1070, 1598, 1948
HphI	GGTGA	5 cut(s)	10, 100, 134, 182, 353
Hpy166II	GTNNAC	5 cut(s)	151, 225, 478, 1910, 2085
Hpy188I	TCNGA	4 cut(s)	65, 261, 706, 1751
Hpy8I	GTNNAC	5 cut(s)	151, 225, 478, 1910, 2085
HpyAV	CCTTC	5 cut(s)	97, 1290, 1370, 1818, 1898
HpyCH4III	ACNGT	3 cut(s)	338, 482, 1930
HpyF10VI	GCNNNNNNNGC	8 cut(s)	171, 512, 553, 604, 1097, 1180, 1625, 1708
HpyF3I	CTNAG	5 cut(s)	8, 170, 1136, 1664, 2045
Ksp22I	TGATCA	3 cut(s)	565, 1212, 1740
Kzo9I	GATC	9 cut(s)	11, 559, 565, 1177, 1212, 1705, 1740, 1746, 2069
LmnI	GCTCC	2 cut(s)	202, 2002
Lsp1109I	GCAGC	2 cut(s)	254, 1682
LweI	GCATC	3 cut(s)	493, 853, 1381
MabI	ACCWGGT	1 cut(s)	144
MaeI	CTAG	6 cut(s)	549, 1149, 1337, 1677, 1865, 1992
MaeIII	GTNAC	5 cut(s)	3, 1082, 1109, 1610, 2099
MalI	GATC	9 cut(s)	13, 561, 567, 1179, 1214, 1707, 1742, 1748, 2071
MboI	GATC	9 cut(s)	11, 559, 565, 1177, 1212, 1705, 1740, 1746, 2069
MfeI	CAATTG	2 cut(s)	982, 1510
MflI	RGATCY	1 cut(s)	11
MhlI	GDGCHC	1 cut(s)	861
MluCI	AATT	6 cut(s)	134, 318, 452, 490, 982, 1510
MlyI	GAGTC	2 cut(s)	434, 549
MmeI	TCCRAC	1 cut(s)	88
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	7 cut(s)	24, 519, 633, 1065, 1125, 1593, 1653
MslI	CAYNNNNRTG	3 cut(s)	339, 416, 674
MspI	CCGG	4 cut(s)	323, 1070, 1598, 1948
MspR9I	CCNGG	3 cut(s)	146, 324, 614
MunI	CAATTG	2 cut(s)	982, 1510
Mva1269I	GAATGC	1 cut(s)	165
MvaI	CCWGG	2 cut(s)	146, 614
MwoI	GCNNNNNNNGC	8 cut(s)	171, 512, 553, 604, 1097, 1180, 1625, 1708
NciI	CCSGG	1 cut(s)	324
NdeII	GATC	9 cut(s)	11, 559, 565, 1177, 1212, 1705, 1740, 1746, 2069
NmuCI	GTSAC	3 cut(s)	3, 1109, 2099
NspI	RCATGY	6 cut(s)	602, 611, 1174, 1350, 1702, 1878
OliI	CACNNNNGTG	1 cut(s)	339
PaeI	GCATGC	3 cut(s)	611, 1174, 1702
PagI	TCATGA	2 cut(s)	1302, 1830
PctI	GAATGC	1 cut(s)	165
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	5 cut(s)	297, 508, 701, 1306, 1834
PflMI	CCANNNNNTGG	4 cut(s)	199, 1039, 1394, 1567
PkrI	GCNGC	2 cut(s)	269, 1697
PleI	GAGTC	2 cut(s)	433, 548
PpsI	GAGTC	2 cut(s)	433, 548
PsiI	TTATAA	1 cut(s)	822
Psp6I	CCWGG	2 cut(s)	144, 612
PspGI	CCWGG	2 cut(s)	144, 612
PspPI	GGNCC	1 cut(s)	222
PstNI	CAGNNNCTG	2 cut(s)	259, 1394
PsuI	RGATCY	1 cut(s)	11
RsaI	GTAC	8 cut(s)	871, 1031, 1200, 1399, 1559, 1728, 2011, 2084
RsaNI	GTAC	8 cut(s)	870, 1030, 1199, 1398, 1558, 1727, 2010, 2083
RseI	CAYNNNNRTG	3 cut(s)	339, 416, 674
SaqAI	TTAA	7 cut(s)	24, 519, 633, 1065, 1125, 1593, 1653
SatI	GCNGC	2 cut(s)	268, 1696
Sau3AI	GATC	9 cut(s)	11, 559, 565, 1177, 1212, 1705, 1740, 1746, 2069
Sau96I	GGNCC	1 cut(s)	222
ScaI	AGTACT	1 cut(s)	2011
SchI	GAGTC	2 cut(s)	434, 549
ScrFI	CCNGG	3 cut(s)	146, 324, 614
SduI	GDGCHC	1 cut(s)	861
SexAI	ACCWGGT	1 cut(s)	144
SfaNI	GCATC	3 cut(s)	493, 853, 1381
SinI	GGWCC	1 cut(s)	222
SmiMI	CAYNNNNRTG	3 cut(s)	339, 416, 674
SphI	GCATGC	3 cut(s)	611, 1174, 1702
Sse9I	AATT	6 cut(s)	134, 318, 452, 490, 982, 1510
SsiI	CCGC	1 cut(s)	91
SspMI	CTAG	6 cut(s)	549, 1149, 1337, 1677, 1865, 1992
StyD4I	CCNGG	3 cut(s)	144, 322, 612
TaaI	ACNGT	3 cut(s)	338, 482, 1930
TaqI	TCGA	6 cut(s)	511, 726, 878, 1406, 2021, 2072
TasI	AATT	6 cut(s)	134, 318, 452, 490, 982, 1510
TatI	WGTACW	2 cut(s)	2009, 2082
TfiI	GAWTC	5 cut(s)	297, 508, 701, 1306, 1834
Tru1I	TTAA	7 cut(s)	24, 519, 633, 1065, 1125, 1593, 1653
Tru9I	TTAA	7 cut(s)	24, 519, 633, 1065, 1125, 1593, 1653
TscAI	CASTG	2 cut(s)	343, 2092
TseFI	GTSAC	3 cut(s)	3, 1109, 2099
TseI	GCWGC	2 cut(s)	267, 1695
Tsp45I	GTSAC	3 cut(s)	3, 1109, 2099
TspRI	CASTG	2 cut(s)	343, 2092
Van91I	CCANNNNNTGG	4 cut(s)	199, 1039, 1394, 1567
VpaK11BI	GGWCC	1 cut(s)	222
XapI	RAATTY	1 cut(s)	318
XbaI	TCTAGA	2 cut(s)	1148, 1676
XceI	RCATGY	6 cut(s)	602, 611, 1174, 1350, 1702, 1878
XcmI	CCANNNNNNNNNTGG	1 cut(s)	456
XmiI	GTMKAC	1 cut(s)	1909
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	6 cut(s)	549, 1149, 1337, 1677, 1865, 1992
ZrmI	AGTACT	1 cut(s)	2011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.