Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006290

Physical Location & Seq

Genomic Coordinates Reverse (-)

52971359 .. 52972668

Gene Structure 1310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019513

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGATCGAAATGGGAGTTAAGCCGGATGAATGGAGTTACAATGCAATCCAAGCTTATCATTGTGAGCATTGTGAAGTTAATCAGGCTCTTAGGTTGTTGTCTAGAATGGAAAAAGATAACTGCTTGCCAGATCGGCATACTTACAATATGGTACTAAAGTTGCTGACCAGGATCGGAAGATTTGATAGGGCAACTGAAGTGTGGGAGAGTATCGGCAAGGGAGGCTTTTATCCGTCTGTTTCAACATATTCTGTCGTGATTCATGGTTTGTGCAAAAAGAAACACAAACTAGAGGAGGCATGTAAATACTTTGAGATAATGATTGATGAAGGTATACCACCATACTCTTCTACTGTGGAGATGTTGAGAAACCGGCTTTTGGGTTTGGGGCTACTTGATGATATTGAAATACTTGCTAGTAAGATGGAGCAAAGCACTTCTTGCTCAATACAAGAGTTCGCAAAAGTGCTGAGAGGGAGCAAAGCTTCTGTAAGATCGAGAAGTGGTGTGAAACCAGTACTTGAAGAAGCAAATTATGGGTACAGATGCCTCTGTTCAATGATTACTTGCAGTATCATCTTGTCTATTGCCGACGTAAAGGATGAATTGGGAGGGATGCTAAACATGAATCTTGAGATTGCCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

216

Amino Acids

24.28

Weight (kDa)

6.23

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	8 - 55	6.3e-11	PPR repeat family
PPR_2	PF13041	47 - 92	4.1e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52640
fragaria_vesca	FvH4_6g30140 FvH4_6g30140 FvH4_6g30140 FvH4_6g30140 FvH4_6g30140
malus_domestica	MD17G1208000.v1.1
prunus_persica	Prupe.3G082300_v2.0.a1 Prupe.3G082300_v2.0.a1
pyrus_communis	pycom17g21050
rosa_chinensis	RchiOBHm_Chr2g0136191 RchiOBHm_Chr2g0136301 RchiOBHm_Chr2g0136351
rosa_laevigata	RLG00000019513 RLG00000019521
rosa_multiflora	Rmu_sc0001998.1_g000030 Rmu_sc0002070.1_g000029
rosa_roxburghii	Rroxscaffold_2G00108380
rosa_rugosa	Rorug02G0328900 Rorug02G0329100 Rorug02G0329200
rosa_samantha	Rh2AG380400 Rh2AG380700 Rh2BG387500 Rh2CG366500 Rh2DG403700
rosa_wichuraiana	Rw2G031130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	334
AclWI	GGATC	1 cut(s)	179
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	3 cut(s)	153, 519, 542
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	4 cut(s)	243, 407, 524, 558
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	2 cut(s)	53, 485
AluI	AGCT	2 cut(s)	53, 485
AlwI	GGATC	1 cut(s)	179
BaeI	ACNNNNGTAYC	2 cut(s)	143, 176
BccI	CCATC	1 cut(s)	418
BciT130I	CCWGG	1 cut(s)	169
BfaI	CTAG	3 cut(s)	102, 290, 417
BglI	GCCNNNNNGGC	1 cut(s)	133
BmcAI	AGTACT	1 cut(s)	519
Bme1390I	CCNGG	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	2 cut(s)	536, 606
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse118I	RCCGGY	1 cut(s)	372
Bse1I	ACTGG	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	169
BseGI	GGATG	3 cut(s)	31, 607, 621
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	461
BseNI	ACTGG	1 cut(s)	515
BseRI	GAGGAG	1 cut(s)	308
BsiSI	CCGG	2 cut(s)	23, 373
BslI	CCNNNNNNNGG	1 cut(s)	379
Bsp143I	GATC	4 cut(s)	3, 130, 171, 494
BspCNI	CTCAG	1 cut(s)	462
BspPI	GGATC	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	515
BssAI	RCCGGY	1 cut(s)	372
BssMI	GATC	4 cut(s)	3, 130, 171, 494
BssNAI	GTATAC	1 cut(s)	335
Bst1107I	GTATAC	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	352
BstAPI	GCANNNNNTGC	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	3 cut(s)	89, 470, 645
BstF5I	GGATG	3 cut(s)	31, 607, 621
BstKTI	GATC	4 cut(s)	6, 133, 174, 497
BstMBI	GATC	4 cut(s)	3, 130, 171, 494
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 133, 222, 441
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	167
BstZ17I	GTATAC	1 cut(s)	335
BtsCI	GGATG	3 cut(s)	31, 607, 621
Cac8I	GCNNGC	1 cut(s)	125
Cfr10I	RCCGGY	1 cut(s)	372
Csp6I	GTAC	3 cut(s)	152, 518, 541
CviAII	CATG	3 cut(s)	263, 300, 625
CviJI	RGCY	7 cut(s)	22, 53, 86, 225, 376, 391, 485
CviKI_1	RGCY	7 cut(s)	22, 53, 86, 225, 376, 391, 485
CviQI	GTAC	3 cut(s)	152, 518, 541
DdeI	CTNAG	3 cut(s)	89, 470, 645
DpnI	GATC	4 cut(s)	5, 132, 173, 496
DpnII	GATC	4 cut(s)	3, 130, 171, 494
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	167
FaeI	CATG	3 cut(s)	266, 303, 628
FaiI	YATR	9 cut(s)	138, 149, 247, 264, 301, 335, 343, 537, 626
FalI	AAGNNNNNCTT	4 cut(s)	209, 241, 424, 456
FatI	CATG	3 cut(s)	262, 299, 624
FblI	GTMKAC	1 cut(s)	334
FokI	GGATG	3 cut(s)	38, 614, 628
FspBI	CTAG	3 cut(s)	102, 290, 417
HapII	CCGG	2 cut(s)	23, 373
Hin1II	CATG	3 cut(s)	266, 303, 628
HindIII	AAGCTT	2 cut(s)	51, 483
HinfI	GANTC	2 cut(s)	259, 628
HpaII	CCGG	2 cut(s)	23, 373
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	1 cut(s)	176
Hpy188III	TCNNGA	4 cut(s)	102, 256, 498, 632
Hpy8I	GTNNAC	1 cut(s)	335
Hpy99I	CGWCG	1 cut(s)	596
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	1 cut(s)	594
HpyCH4V	TGCA	3 cut(s)	44, 273, 570
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 133, 222, 441
HpyF3I	CTNAG	3 cut(s)	89, 470, 645
HpySE526I	ACGT	1 cut(s)	594
Hsp92II	CATG	3 cut(s)	266, 303, 628
Kzo9I	GATC	4 cut(s)	3, 130, 171, 494
LmnI	GCTCC	2 cut(s)	427, 477
LpnPI	CCDG	7 cut(s)	36, 68, 141, 154, 181, 386, 528
LweI	GCATC	2 cut(s)	536, 606
MaeI	CTAG	3 cut(s)	102, 290, 417
MaeII	ACGT	1 cut(s)	594
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	4 cut(s)	5, 132, 173, 496
MboI	GATC	4 cut(s)	3, 130, 171, 494
MboII	GAAGA	3 cut(s)	189, 339, 536
MluCI	AATT	2 cut(s)	532, 605
MnlI	CCTC	6 cut(s)	215, 286, 289, 467, 560, 605
MseI	TTAA	2 cut(s)	18, 78
MspI	CCGG	2 cut(s)	23, 373
MspR9I	CCNGG	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	4 cut(s)	50, 133, 222, 441
NdeII	GATC	4 cut(s)	3, 130, 171, 494
NlaIII	CATG	3 cut(s)	266, 303, 628
NspI	RCATGY	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	259, 628
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
RsaI	GTAC	3 cut(s)	153, 519, 542
RsaNI	GTAC	3 cut(s)	152, 518, 541
SaqAI	TTAA	2 cut(s)	18, 78
Sau3AI	GATC	4 cut(s)	3, 130, 171, 494
ScaI	AGTACT	1 cut(s)	519
ScrFI	CCNGG	1 cut(s)	169
SetI	ASST	5 cut(s)	55, 95, 334, 487, 597
SfaNI	GCATC	2 cut(s)	536, 606
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	2 cut(s)	532, 605
SspMI	CTAG	3 cut(s)	102, 290, 417
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	1 cut(s)	597
TaqI	TCGA	2 cut(s)	6, 497
TasI	AATT	2 cut(s)	532, 605
TatI	WGTACW	1 cut(s)	517
TfiI	GAWTC	2 cut(s)	259, 628
Tru1I	TTAA	2 cut(s)	18, 78
Tru9I	TTAA	2 cut(s)	18, 78
TspDTI	ATGAA	5 cut(s)	42, 251, 342, 618, 641
TspGWI	ACGGA	1 cut(s)	222
XbaI	TCTAGA	1 cut(s)	101
XceI	RCATGY	1 cut(s)	303
XmiI	GTMKAC	1 cut(s)	334
XspI	CTAG	3 cut(s)	102, 290, 417
ZrmI	AGTACT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.