Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006290

Physical Location & Seq

Genomic Coordinates Forward (+)

6093898 .. 6097229

Gene Structure 3332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G082300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGTCCCTAAGATCGCTCAACTCTAAACCCAAAACCCTTCACTCTATCTTCCACTCTCTTCTCTCATCCCCCAAACCCAACACTCATTACAATCCCTTCTCTTCTCTCACTTACCAAAACCCACCACCTCCACCATCACCACACCTGGTGAATGAGATCTCACGCATTCTCAGCGACCACAGAAACGCTCACCACGACTTGGAGCATTCCCTCAACCCTTTGTGTACCCAAATATCCACAAACTTGGTTGAACAAGTTCTTAAACGGTGCAAAAATCTTGGCCTCTCTGCCCACAGGTTCTTTCTTTGGGCTAAAACAATTCCGGGGTTTCAGCACAGTTTTGAAAGCTATCACATTTTGATTGAGATTTTGGGAAGTAGCAAGCAATATGCTGTGTTGTGGGATTTTCTTATAGAGGTGAGAGAGTCCAAGTGTATTGAGATTGTCCCAGAAGTTTTCTGGCTTATTTTTAGAGTTTACAGTAGAGCTAATCTGCCTCGTGATGCTATTCGAGCTTTTAATAGAATGGTTGAGTTTGGAATTAAGCCGAGTGTTCTTGATCTTGATCAGCTTATGTATACGTTATGTAAAAGAAAGCATGTCAAGTATGCCCATGAGTTTTTTGATAAAGTTAAGAGTGGGTTTGAGTTGAATGCTAAAATTTATAGTATTTTGATGAGGGGTTGGGGAGACATTGGTGATTCGGATGAAGCACGTAAGTTGTTTGATGAAATGACTGAACGAGGATGTTTGGTGGATGTGCCTGCATATAATAGTTATTTGGAAGCTTTGTGTAAAGGTGGGAAAGTTGATGAGGCCTATAAGATATTCCGGGGGATGGGGTCAAATGGAACTGACCCGGATGCTTGTACTTATTCGATTTTCATTCGTGCATATTGTGAAGCCAATGACATTCATTCAGTTTTTAGGGTGCTTGACAGGATGAAGAGATATAATCTTTTGCCCAATGTGTATTCTTACAATTGTATTATCAAGAAACTGTGTAAGAATGACAAGGTGGAAGAGGCTTACGAACTTTTGGATGAGATGATTGAGAGGGGAGTTATGCCGGATGCGTGGAGTTACAACGCAATCCAAGCTCATCATTGTGATCATTGCGAGGTTAACAGGGCTCTTAGGTTGCTATCTAGAATGAAAAAAGATAACTGCAAGCCAGATCGACATACTTATAATATGGTGCTAAAGTTGCTGATTAGGATAGGAAGATTTGATCGGGCAACGGAAGTTTGGGAGAGTATGGGGGAGAGGGGATTTTATCCTTCTGTTTCAACATATTCTGTAATGATCCACGGTTTGTGCAAGAAAAAACATAAGCTAGAGGAGGCTTGTAAATACTTTGAGATAATGATCGATGAAGGTATACCGCCATACTTTTCTACCGTTGAGATGTTGAAGAACCGGCTCAGGGGCTTAGGGCTCCTCGAGCATACTGAGATACTTGCAAGTAAGATGGAACAAAGCACTTGTTGTTCAATACAAGAGATGGCAAACTTGATGAGAGGTAATAAAACTTATGTAACATATAGAATTGAGCATACTGACAATGAAAGTGATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

527

Amino Acids

61.12

Weight (kDa)

8.19

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52640
fragaria_vesca	FvH4_6g30140 FvH4_6g30140 FvH4_6g30140 FvH4_6g30140 FvH4_6g30140
malus_domestica	MD17G1208000.v1.1
prunus_persica	Prupe.3G082300_v2.0.a1 Prupe.3G082300_v2.0.a1
pyrus_communis	pycom17g21050
rosa_chinensis	RchiOBHm_Chr2g0136191 RchiOBHm_Chr2g0136301 RchiOBHm_Chr2g0136351
rosa_laevigata	RLG00000019513 RLG00000019521
rosa_multiflora	Rmu_sc0001998.1_g000030 Rmu_sc0002070.1_g000029
rosa_roxburghii	Rroxscaffold_2G00108380
rosa_rugosa	Rorug02G0328900 Rorug02G0329100 Rorug02G0329200
rosa_samantha	Rh2AG380400 Rh2AG380700 Rh2BG387500 Rh2CG366500 Rh2DG403700
rosa_wichuraiana	Rw2G031130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1191
AccB7I	CCANNNNNTGG	1 cut(s)	199
AccI	GTMKAC	2 cut(s)	578, 1381
AciI	CCGC	1 cut(s)	1385
AclWI	GGATC	1 cut(s)	1300
AcsI	RAATTY	1 cut(s)	660
AdeI	CACNNNGTG	1 cut(s)	148
AfaI	GTAC	2 cut(s)	226, 871
AfiI	CCNNNNNNNGG	3 cut(s)	199, 838, 1426
AgsI	TTSAA	6 cut(s)	251, 344, 652, 1290, 1414, 1494
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	7 cut(s)	348, 488, 515, 571, 788, 1100, 1336
AluI	AGCT	7 cut(s)	348, 488, 515, 571, 788, 1100, 1336
Alw26I	GTCTC	1 cut(s)	684
AlwI	GGATC	1 cut(s)	1300
Ama87I	CYCGRG	1 cut(s)	1442
AoxI	GGCC	2 cut(s)	280, 816
ApoI	RAATTY	1 cut(s)	660
Asp700I	GAANNNNTTC	1 cut(s)	255
AsuC2I	CCSGG	3 cut(s)	324, 833, 860
AsuHPI	GGTGA	5 cut(s)	129, 160, 182, 430, 710
AvaI	CYCGRG	1 cut(s)	1442
BanII	GRGCYC	2 cut(s)	1135, 1440
BauI	CACGAG	1 cut(s)	498
BccI	CCATC	4 cut(s)	142, 832, 1465, 1498
BciT130I	CCWGG	1 cut(s)	146
BclI	TGATCA	2 cut(s)	565, 1111
BcnI	CCSGG	3 cut(s)	324, 833, 860
BcoDI	GTCTC	1 cut(s)	684
BfaI	CTAG	2 cut(s)	1149, 1337
BglII	AGATCT	1 cut(s)	156
Bme1390I	CCNGG	4 cut(s)	146, 324, 833, 860
BmeT110I	CYCGRG	1 cut(s)	1442
BmiI	GGNNCC	1 cut(s)	1439
BmrFI	CCNGG	4 cut(s)	146, 324, 833, 860
BmsI	GCATC	3 cut(s)	493, 853, 1063
Bpu10I	CCTNAGC	2 cut(s)	1424, 1432
BpuMI	CCSGG	3 cut(s)	324, 833, 860
Bsa29I	ATCGAT	1 cut(s)	1371
BsaAI	YACGTR	1 cut(s)	716
BsaBI	GATNNNNATC	2 cut(s)	564, 1367
BsaJI	CCNNGG	3 cut(s)	323, 832, 1309
Bsc4I	CCNNNNNNNGG	3 cut(s)	199, 838, 1426
Bse118I	RCCGGY	1 cut(s)	1419
Bse3DI	GCAATG	1 cut(s)	1114
Bse8I	GATNNNNATC	2 cut(s)	564, 1367
BseBI	CCWGG	1 cut(s)	146
BseCI	ATCGAT	1 cut(s)	1371
BseDI	CCNNGG	3 cut(s)	323, 832, 1309
BseGI	GGATG	9 cut(s)	65, 712, 752, 763, 843, 868, 948, 1048, 1078
BseJI	GATNNNNATC	2 cut(s)	564, 1367
BseLI	CCNNNNNNNGG	3 cut(s)	199, 838, 1426
BseMI	GCAATG	1 cut(s)	1114
BseMII	CTCAG	3 cut(s)	184, 1438, 1443
BseRI	GAGGAG	2 cut(s)	1355, 1430
BshFI	GGCC	2 cut(s)	282, 818
BshVI	ATCGAT	1 cut(s)	1371
BsiHKCI	CYCGRG	1 cut(s)	1442
BsiSI	CCGG	5 cut(s)	323, 832, 860, 1070, 1420
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	3 cut(s)	199, 838, 1426
BsmAI	GTCTC	1 cut(s)	684
BsmFI	GGGAC	1 cut(s)	431
BsmI	GAATGC	3 cut(s)	165, 205, 658
BsnI	GGCC	2 cut(s)	282, 818
BsoBI	CYCGRG	1 cut(s)	1442
Bsp1286I	GDGCHC	2 cut(s)	1135, 1440
Bsp143I	GATC	9 cut(s)	11, 156, 559, 565, 1111, 1177, 1231, 1305, 1368
BspACI	CCGC	1 cut(s)	1385
BspANI	GGCC	2 cut(s)	282, 818
BspCNI	CTCAG	3 cut(s)	183, 1437, 1444
BspDI	ATCGAT	1 cut(s)	1371
BspLI	GGNNCC	1 cut(s)	1439
BspPI	GGATC	1 cut(s)	1300
BsrDI	GCAATG	1 cut(s)	1114
BsrFI	RCCGGY	1 cut(s)	1419
BssAI	RCCGGY	1 cut(s)	1419
BssECI	CCNNGG	3 cut(s)	323, 832, 1309
BssMI	GATC	9 cut(s)	11, 156, 559, 565, 1111, 1177, 1231, 1305, 1368
BssNAI	GTATAC	2 cut(s)	579, 1382
BssSI	CACGAG	1 cut(s)	498
Bst1107I	GTATAC	2 cut(s)	579, 1382
Bst2BI	CACGAG	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	6 cut(s)	267, 338, 482, 1002, 1313, 1402
Bst6I	CTCTTC	4 cut(s)	63, 106, 941, 1017
BstBAI	YACGTR	1 cut(s)	716
BstC8I	GCNNGC	3 cut(s)	383, 765, 1172
BstDEI	CTNAG	6 cut(s)	8, 170, 1136, 1424, 1432, 1452
BstDSI	CCRYGG	1 cut(s)	1309
BstF5I	GGATG	9 cut(s)	65, 712, 752, 763, 843, 868, 948, 1048, 1078
BstKTI	GATC	9 cut(s)	14, 159, 562, 568, 1114, 1180, 1234, 1308, 1371
BstMAI	GTCTC	1 cut(s)	684
BstMBI	GATC	9 cut(s)	11, 156, 559, 565, 1111, 1177, 1231, 1305, 1368
BstMWI	GCNNNNNNNGC	5 cut(s)	171, 512, 1097, 1207, 1444
BstNI	CCWGG	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	602
BstSCI	CCNGG	4 cut(s)	144, 322, 831, 858
BstX2I	RGATCY	1 cut(s)	156
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	156
BstZ17I	GTATAC	2 cut(s)	579, 1382
Bsu15I	ATCGAT	1 cut(s)	1371
BsuRI	GGCC	2 cut(s)	282, 818
BsuTUI	ATCGAT	1 cut(s)	1371
BtgI	CCRYGG	1 cut(s)	1309
BtsCI	GGATG	9 cut(s)	65, 712, 752, 763, 843, 868, 948, 1048, 1078
Cac8I	GCNNGC	3 cut(s)	383, 765, 1172
Cfr10I	RCCGGY	1 cut(s)	1419
ClaI	ATCGAT	1 cut(s)	1371
CsiI	ACCWGGT	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	225, 870
CviAII	CATG	2 cut(s)	599, 614
CviQI	GTAC	2 cut(s)	225, 870
DdeI	CTNAG	6 cut(s)	8, 170, 1136, 1424, 1432, 1452
DpnI	GATC	9 cut(s)	13, 158, 561, 567, 1113, 1179, 1233, 1307, 1370
DpnII	GATC	9 cut(s)	11, 156, 559, 565, 1111, 1177, 1231, 1305, 1368
DraIII	CACNNNGTG	1 cut(s)	148
Eam1104I	CTCTTC	4 cut(s)	63, 106, 941, 1017
EarI	CTCTTC	4 cut(s)	63, 106, 941, 1017
Eco147I	AGGCCT	1 cut(s)	818
Eco24I	GRGCYC	2 cut(s)	1135, 1440
Eco88I	CYCGRG	1 cut(s)	1442
EcoRII	CCWGG	1 cut(s)	144
EcoT38I	GRGCYC	2 cut(s)	1135, 1440
FaeI	CATG	2 cut(s)	602, 617
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	2 cut(s)	598, 613
FbaI	TGATCA	2 cut(s)	565, 1111
FblI	GTMKAC	2 cut(s)	578, 1381
FokI	GGATG	9 cut(s)	52, 719, 759, 770, 850, 875, 955, 1055, 1085
FriOI	GRGCYC	2 cut(s)	1135, 1440
FspBI	CTAG	2 cut(s)	1149, 1337
HaeIII	GGCC	2 cut(s)	282, 818
HapII	CCGG	5 cut(s)	323, 832, 860, 1070, 1420
Hin1II	CATG	2 cut(s)	602, 617
HincII	GTYRAC	1 cut(s)	1126
HindII	GTYRAC	1 cut(s)	1126
HindIII	AAGCTT	1 cut(s)	786
HinfI	GANTC	2 cut(s)	425, 701
HpaI	GTTAAC	1 cut(s)	1126
HpaII	CCGG	5 cut(s)	323, 832, 860, 1070, 1420
HphI	GGTGA	5 cut(s)	129, 160, 182, 430, 710
Hpy166II	GTNNAC	5 cut(s)	225, 478, 579, 1126, 1382
Hpy188I	TCNGA	1 cut(s)	706
Hpy188III	TCNNGA	5 cut(s)	500, 557, 563, 994, 1149
Hpy8I	GTNNAC	5 cut(s)	225, 478, 579, 1126, 1382
HpyAV	CCTTC	4 cut(s)	47, 106, 1290, 1370
HpyCH4III	ACNGT	6 cut(s)	267, 338, 482, 1002, 1313, 1402
HpyCH4IV	ACGT	2 cut(s)	581, 715
HpyCH4V	TGCA	6 cut(s)	270, 767, 893, 1170, 1320, 1463
HpyF10VI	GCNNNNNNNGC	5 cut(s)	171, 512, 1097, 1207, 1444
HpyF3I	CTNAG	6 cut(s)	8, 170, 1136, 1424, 1432, 1452
HpySE526I	ACGT	2 cut(s)	581, 715
Hsp92II	CATG	2 cut(s)	602, 617
Ksp22I	TGATCA	2 cut(s)	565, 1111
KspAI	GTTAAC	1 cut(s)	1126
Kzo9I	GATC	9 cut(s)	11, 156, 559, 565, 1111, 1177, 1231, 1305, 1368
LmnI	GCTCC	2 cut(s)	202, 1443
LweI	GCATC	3 cut(s)	493, 853, 1063
MabI	ACCWGGT	1 cut(s)	144
MaeI	CTAG	2 cut(s)	1149, 1337
MaeII	ACGT	2 cut(s)	581, 715
MaeIII	GTNAC	2 cut(s)	1082, 1537
MalI	GATC	9 cut(s)	13, 158, 561, 567, 1113, 1179, 1233, 1307, 1370
MboI	GATC	9 cut(s)	11, 156, 559, 565, 1111, 1177, 1231, 1305, 1368
MboII	GAAGA	7 cut(s)	40, 50, 93, 958, 1034, 1236, 1426
MfeI	CAATTG	1 cut(s)	982
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	2 cut(s)	1135, 1440
MluCI	AATT	5 cut(s)	318, 540, 660, 982, 1548
MlyI	GAGTC	1 cut(s)	434
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	5 cut(s)	261, 519, 543, 633, 1125
MslI	CAYNNNNRTG	1 cut(s)	1107
MspI	CCGG	5 cut(s)	323, 832, 860, 1070, 1420
MspR9I	CCNGG	4 cut(s)	146, 324, 833, 860
MunI	CAATTG	1 cut(s)	982
Mva1269I	GAATGC	3 cut(s)	165, 205, 658
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	5 cut(s)	171, 512, 1097, 1207, 1444
NciI	CCSGG	3 cut(s)	324, 833, 860
NdeII	GATC	9 cut(s)	11, 156, 559, 565, 1111, 1177, 1231, 1305, 1368
NlaIII	CATG	2 cut(s)	602, 617
NlaIV	GGNNCC	1 cut(s)	1439
NmeAIII	GCCGAG	1 cut(s)	573
NspI	RCATGY	1 cut(s)	602
PaeR7I	CTCGAG	1 cut(s)	1442
PceI	AGGCCT	1 cut(s)	818
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PctI	GAATGC	3 cut(s)	165, 205, 658
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	701
PflMI	CCANNNNNTGG	1 cut(s)	199
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
Ppu21I	YACGTR	1 cut(s)	716
PsiI	TTATAA	1 cut(s)	1191
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	1439
PspXI	VCTCGAGB	1 cut(s)	1442
PsuI	RGATCY	1 cut(s)	156
RsaI	GTAC	2 cut(s)	226, 871
RsaNI	GTAC	2 cut(s)	225, 870
RseI	CAYNNNNRTG	1 cut(s)	1107
SaqAI	TTAA	5 cut(s)	261, 519, 543, 633, 1125
Sau3AI	GATC	9 cut(s)	11, 156, 559, 565, 1111, 1177, 1231, 1305, 1368
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	4 cut(s)	146, 324, 833, 860
SduI	GDGCHC	2 cut(s)	1135, 1440
SexAI	ACCWGGT	1 cut(s)	144
SfaNI	GCATC	3 cut(s)	493, 853, 1063
Sfr274I	CTCGAG	1 cut(s)	1442
SlaI	CTCGAG	1 cut(s)	1442
SmiMI	CAYNNNNRTG	1 cut(s)	1107
SmlI	CTYRAG	1 cut(s)	1442
SmoI	CTYRAG	1 cut(s)	1442
Sse9I	AATT	5 cut(s)	318, 540, 660, 982, 1548
SseBI	AGGCCT	1 cut(s)	818
SsiI	CCGC	1 cut(s)	1385
SspMI	CTAG	2 cut(s)	1149, 1337
StuI	AGGCCT	1 cut(s)	818
StyD4I	CCNGG	4 cut(s)	144, 322, 831, 858
TaaI	ACNGT	6 cut(s)	267, 338, 482, 1002, 1313, 1402
TaiI	ACGT	2 cut(s)	584, 718
TaqI	TCGA	5 cut(s)	511, 878, 1180, 1371, 1443
TasI	AATT	5 cut(s)	318, 540, 660, 982, 1548
TatI	WGTACW	1 cut(s)	869
TfiI	GAWTC	1 cut(s)	701
Tru1I	TTAA	5 cut(s)	261, 519, 543, 633, 1125
Tru9I	TTAA	5 cut(s)	261, 519, 543, 633, 1125
TspDTI	ATGAA	8 cut(s)	723, 744, 874, 905, 959, 1169, 1389, 1581
TspGWI	ACGGA	1 cut(s)	1256
Van91I	CCANNNNNTGG	1 cut(s)	199
XapI	RAATTY	1 cut(s)	660
XbaI	TCTAGA	1 cut(s)	1148
XceI	RCATGY	1 cut(s)	602
XcmI	CCANNNNNNNNNTGG	1 cut(s)	456
XhoI	CTCGAG	1 cut(s)	1442
XmiI	GTMKAC	2 cut(s)	578, 1381
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	2 cut(s)	1149, 1337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.